MXO52756.5prime Sequence
944 bp (810 high quality bases) assembled on 2007-04-02
> MXO52756.5prime
CAGTCGACATGCCGATTCAGGCTCCCTCATGGACAGATTTTCTGAACTGT
CCCATCTGCTGCAATGAATTCGCGGCCAGCCAGCGATGTCCGGTCAGTCT
GGGCTGCGGGCACACCATCTGCAAGCTATGCCTGACGACCCTCTACAACC
GGCAGTGTCCCTTCGATCAGACCGTGATTGTCAGTGACATCGACAATTTG
CCCATCAACCATGCCTTGCTCCAGTTGGTCAAGGACTCGGAGCTCCTCGA
GCTGGCACCACCACCGCCCAGTGTGCAGAAGCTGGAGCCGGAGCACCTTA
AGTGTTACCAACTGGGTCAGCGGTGCATCGAGGAGCTGGCTTTGCACTTG
AAGTCCTTCCTCAACCTGAACGGAAATGGCAATCTTCTAACTCGACCCAT
GTTACGGAAACTGGTTACTCTGGTCAACTGCCAGCTGATGGAGGAGGAGG
GACGGGTGAGAGCGCTTCGAGCAGCCAGATCCCTAGGCGAACGCACAGTC
ACCGAGCTGATCCTGCAGCACCAAAATCCCCAGCAGTTGAGCTCAAATCT
GTGGGCTGCAGTGCGGACAAGAGGATGCCAGTTCCTTGGACCCGCCATGC
AGGAGGAGGTGCTCAAACTGGTGCTGCTGGCCTTGGAGGAGGGATCAGCG
CTTTCGCGCAAAGTGCTGGTCATGTTCGTCGTGCAGCGACTAGAGCCGAA
GTTTCCCCAGGCCTCCAAGACGAGTATCGGACATGTGGTACAGCTGCTCT
ACCGCGCCAGCTGCTTCAAGGTGTCCAAGCGGGAGGCGGACTCGTCGTTG
ATGCAGCTCAAAGAGGAATTCCGTACGTATGACGCCCTACGCCGGGAGCA
CGATGCCCCAATCGTTCAGATAGCCACCGAGGCGGGTCTGCGAATTGCAC
CGGAACATGGTCTTCCCCTATTGTATGGCGACGTGATGCATAAA
MXO52756.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16807-PA | 2460 | CG16807-RA | 1..899 | 9..907 | 4470 | 99.8 | Plus |
| CG16807-PA | 2460 | CG16807-RA | 908..936 | 916..944 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roq-RB | 3901 | CG16807-RB | 136..1072 | 8..944 | 4625 | 99.7 | Plus |
| roq-RC | 6179 | CG16807-RC | 136..1072 | 8..944 | 4625 | 99.7 | Plus |
| roq-RA | 4680 | CG16807-RA | 136..1072 | 8..944 | 4625 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16376237..16377014 | 944..167 | 3785 | 99.1 | Minus |
| 3L | 28110227 | 3L | 16377076..16377238 | 170..8 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:24 has no hits.
MXO52756.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:16 Download gff for
MXO52756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16807-PA | 1..933 | 9..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:07 Download gff for
MXO52756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 220..1153 | 8..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:32 Download gff for
MXO52756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| roq-RA | 136..1069 | 8..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:32 Download gff for
MXO52756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16376240..16377010 | 171..941 | 99 | <- | Minus |
| 3L | 16377076..16377241 | 1..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:07 Download gff for
MXO52756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16369340..16370110 | 171..941 | 99 | <- | Minus |
| arm_3L | 16370176..16370341 | 1..170 | 97 | | Minus |
