MXO52757.5prime Sequence
796 bp (767 high quality bases) assembled on 2007-04-02
> MXO52757.5prime
CAGTCGACATGGATGAAAAGGAACACGAATTGTCGACGAGGGTGGTGAAA
AACGAGGAGAACGAGGATGACGAGAAGCTCAATGAGTTATCCTTTTGTTT
TGTTCGGGGTTCAGATCCACGAGCTGCCACTTGTCGTAGCAAACTCCAAA
ACAGGCGATGCAAATTAAACAAAGAAATAAATAAGGAACTCCGCCTTCGA
GCTGGTGCCGAGAATCTATATAAGGCCACATCGAATCGCAAACTGCGCGA
CACAGTTGCCTTGGAATTAAGCTTTGTCAACTCAAATCTGCAACTGCTGA
AGGAGCAACTGGCCGAGTTGAATTCGTCGGTGGAAATCTATCAGAGCGAA
AGTCACAATGGAATTATGCCCATGATACCGCTGGGCCTGAAGGAAACCAA
GGAGATCAATTTCATGGAACCCTTCTCCGACTTCATCCTGGAACACTACA
GCGAGGAGCCCTCGATGTACATAGATGCCATAGCTGATATGACGGACACG
AGACAGGCATCCAAAACACCGTCACGAGATGCCCTGGGAGTGGCCCTACT
TTTCCGCTACTACAACACGCTGTATTACGTGGAGCGTCGCTTCTTTCCGC
CGGATCGTAACCTGGGCGTGTACTTCGAGTGGTACGACTCGCTCACGGGA
GTTCCCTCGTGCCAGCGGACCATCGCGTTCGAGAAAGCCTGCACCCTGTT
CAATCTGGGCGGCATATATACACAGATCGGCGCTCGACACGATCGCACGA
CGGAACGGGGTCTTGACTTGGCCGTGGATAGTTTTTTACGGGCCGC
MXO52757.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8497-PB | 2157 | Rhp-RB | 1..788 | 9..796 | 3940 | 100 | Plus |
| CG8497-PA | 2157 | Rhp-RA | 1..788 | 9..796 | 3940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rhp-RA | 2381 | CG8497-RA | 104..892 | 8..796 | 3945 | 100 | Plus |
| Rhp-RB | 2536 | CG8497-RB | 259..1047 | 8..796 | 3945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15791460..15791751 | 505..796 | 1460 | 100 | Plus |
| X | 23542271 | X | 15791241..15791397 | 351..507 | 785 | 100 | Plus |
| X | 23542271 | X | 15790977..15791106 | 223..352 | 650 | 100 | Plus |
| X | 23542271 | X | 15790742..15790860 | 107..225 | 595 | 100 | Plus |
| X | 23542271 | X | 15790289..15790389 | 8..108 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:42:26 has no hits.
MXO52757.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:16 Download gff for
MXO52757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8497-PA | 1..788 | 9..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:25 Download gff for
MXO52757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RB | 259..1047 | 8..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:36 Download gff for
MXO52757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rhp-RB | 259..1047 | 8..796 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:36 Download gff for
MXO52757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15791462..15791751 | 507..796 | 100 | | Plus |
| X | 15790289..15790388 | 8..107 | 100 | -> | Plus |
| X | 15790743..15790859 | 108..224 | 100 | -> | Plus |
| X | 15790979..15791106 | 225..352 | 100 | -> | Plus |
| X | 15791243..15791396 | 353..506 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:25 Download gff for
MXO52757.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15684776..15684892 | 108..224 | 100 | -> | Plus |
| arm_X | 15685012..15685139 | 225..352 | 100 | -> | Plus |
| arm_X | 15684322..15684421 | 8..107 | 100 | -> | Plus |
| arm_X | 15685276..15685429 | 353..506 | 100 | -> | Plus |
| arm_X | 15685495..15685784 | 507..796 | 100 | | Plus |
