MXO52761.5prime Sequence
774 bp (664 high quality bases) assembled on 2007-04-02
> MXO52761.5prime
CAGTCGACATGTATGATCTCGACATGGAGACCTCCTTTAATTCGCTGTGG
GAAACCTGTATCTTGCGTCAGTCAACTGGGGCAAACGATATCGATGAGAG
CGAGTTGAACCAGGAGTATTTGAAGGAGGGATCCGTGTTTGTGCACAACA
CTGATGTGGATGGCAAGCCGTTGTTGGTATTCCGCGTTAAGATGCACAGT
AAGTCCAAGAACCTGGACGAACTGATACGCATCGTGGTGTACTGGGTGGA
AAGGACTCAGAGGGAGCAGCATCTGACCCAATTGACCATATTCTTCGACA
TGTCGGGCACGAGTTTGGCCTCCATGGATCTGGAGTTTGTGAAACGCATT
GTGGAGACATTTAAGCAGTTCTATCCCAATAGCTTGAACTACATTTTGGT
ATATGAACTGGGCTGGGTACTAAATGCTGCTTTTAAGGTCATCAAGGCGG
TGCTGCCACCCAAAGCGGTTGAGATTTTAAAAATGATATCGAAAAAGGAC
ATCAACCAGTACATTAACAAGGATAACTGCCTGGCCATCTGGGGTGGCGA
GGATAACTACGAATTTAGCTTTGTGCCGGAGGCTAAAAAGGTCATTTCCA
AACCGGTGGCTGCCAATGCTGGCGATGATGACCAATTCGCGGACAAAAAG
GTCACCTTTGTCGATTCCGCTCCCATGGTGCTCAAGGAGACCAACATCAA
CAAGATGCACACTCCATCCGAGGGCATGTTGCACATCAATCCCAAGGATT
TTGTCAACTTCAATTCCAAGAATG
MXO52761.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33523-PD | 1497 | CG33523-RD | 160..925 | 9..774 | 3805 | 99.8 | Plus |
| CG33523-PA | 705 | CG33523-RA | 9..133 | 650..774 | 625 | 100 | Plus |
| CG33523-PC | 723 | CG33523-RC | 28..151 | 651..774 | 620 | 100 | Plus |
| CG33523-PB | 621 | CG33523-RB | 1..49 | 726..774 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33B-RF | 2574 | CG33523-RF | 403..1168 | 9..774 | 3815 | 99.9 | Plus |
| Vap-33B-RD | 2574 | CG33523-RD | 403..1168 | 9..774 | 3815 | 99.9 | Plus |
| Vap-33B-RE | 2672 | CG33523-RE | 403..1044 | 9..650 | 3195 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5924905..5925322 | 9..426 | 2075 | 99.8 | Plus |
| 3L | 28110227 | 3L | 5925400..5925626 | 426..652 | 1135 | 100 | Plus |
| 3L | 28110227 | 3L | 5928222..5928297 | 649..724 | 380 | 100 | Plus |
| 3L | 28110227 | 3L | 5928536..5928587 | 723..774 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:04:10 has no hits.
MXO52761.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:17 Download gff for
MXO52761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-PD | 154..925 | 1..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:03 Download gff for
MXO52761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RD | 206..977 | 1..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:27 Download gff for
MXO52761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33B-RD | 397..1168 | 1..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:27 Download gff for
MXO52761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5924899..5925322 | 1..426 | 98 | -> | Plus |
| 3L | 5925401..5925624 | 427..650 | 100 | -> | Plus |
| 3L | 5928224..5928296 | 651..723 | 100 | -> | Plus |
| 3L | 5928537..5928587 | 724..774 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:03 Download gff for
MXO52761.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5917999..5918422 | 1..426 | 98 | -> | Plus |
| arm_3L | 5918501..5918724 | 427..650 | 100 | -> | Plus |
| arm_3L | 5921324..5921396 | 651..723 | 100 | -> | Plus |
| arm_3L | 5921637..5921687 | 724..774 | 100 | | Plus |
