MXO52762.5prime Sequence
492 bp (492 high quality bases) assembled on 2007-04-02
> MXO52762.5prime
CAGTCGACATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACT
CTTGAGGTCGAACCGTCGGATACTATCGAAAATGTCAAAGCCAAGATTCA
GGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCTGGCA
AGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAG
TCCACTTTGCACTTGGTGCTCCGCCTGCGTGGTGGTGCCAAGAAGCGCAA
GAAGAAGAACTACTCCACTCCCAAGAAAATCAAGCACAAGAGGAAGAAGG
TCAAGCTAGCTGTCCTGAAATACTACAAGGTTGACGAGAACGGCAAGATC
CACCGTCTCCGTCGCGAGTGCCCTGGTGAGAACTGCGGCGCCGGCGTCTT
CATGGCTGCCCACGAAGATCGTCACTACTGCGGCAAGTGCAACCTGACCT
TTGTCTTCAGCAAACCAGAGGAAAAGGCAAGCTTTCTAGACC
MXO52762.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5271-PA | 471 | RpS27A-RA | 1..468 | 9..476 | 2340 | 100 | Plus |
| CG2960-PA | 387 | RpL40-RA | 106..228 | 114..236 | 390 | 92.6 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 787..881 | 111..205 | 275 | 91.5 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 787..881 | 111..205 | 275 | 91.5 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 787..881 | 111..205 | 275 | 91.5 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 94..197 | 102..205 | 270 | 90.3 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 94..197 | 102..205 | 270 | 90.3 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 94..197 | 102..205 | 270 | 90.3 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 310..425 | 90..205 | 255 | 88.7 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 310..425 | 90..205 | 255 | 88.7 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 310..425 | 90..205 | 255 | 88.7 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1222..1337 | 90..205 | 230 | 87.9 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1222..1337 | 90..205 | 230 | 87.9 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1222..1337 | 90..205 | 230 | 87.9 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 559..653 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1015..1109 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1471..1565 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1699..1793 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 1927..2021 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 559..653 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1015..1109 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1471..1565 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1699..1793 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 1927..2021 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1015..1109 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 559..653 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1471..1565 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1699..1793 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 1927..2021 | 111..205 | 225 | 89.4 | Plus |
| CG11624-PA | 2292 | Ubi-p63E-RA | 2155..2219 | 111..175 | 200 | 92.3 | Plus |
| CG11624-PC | 2292 | Ubi-p63E-RC | 2155..2219 | 111..175 | 200 | 92.3 | Plus |
| CG11624-PB | 2292 | Ubi-p63E-RB | 2155..2219 | 111..175 | 200 | 92.3 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 1140..1193 | 8..61 | 195 | 94.4 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 912..953 | 8..49 | 185 | 97.6 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 1368..1409 | 8..49 | 185 | 97.6 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 684..725 | 8..49 | 185 | 97.6 | Plus |
| CG11700-PA | 906 | CG11700-RA | 1..41 | 9..49 | 180 | 97.5 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 456..497 | 8..49 | 160 | 95.2 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 82..152 | 90..160 | 155 | 88.7 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 228..281 | 8..61 | 145 | 90.7 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 10..42 | 18..50 | 140 | 96.9 | Plus |
| CG32744-PA | 1605 | CG32744-RA | 313..380 | 93..160 | 140 | 88.2 | Plus |
| CG11700-PA | 906 | CG11700-RA | 228..269 | 8..49 | 135 | 92.8 | Plus |
| CG11700-PA | 906 | CG11700-RA | 456..497 | 8..49 | 135 | 92.8 | Plus |
| CG11700-PA | 906 | CG11700-RA | 684..725 | 8..49 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS27A-RA | 592 | CG5271-RA | 56..523 | 9..476 | 2340 | 100 | Plus |
| RpL40-RB | 659 | CG2960-RB | 123..350 | 9..236 | 705 | 87.8 | Plus |
| RpL40-RA | 587 | CG2960-RA | 65..292 | 9..236 | 705 | 87.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10409731..10410053 | 9..331 | 1615 | 100 | Plus |
| 2L | 23513712 | 2L | 10410239..10410387 | 328..476 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 4228025..4228252 | 9..236 | 705 | 87.3 | Plus |
| X | 23542271 | X | 6277610..6277837 | 235..8 | 585 | 83.8 | Minus |
| X | 23542271 | X | 6277382..6277609 | 235..8 | 585 | 83.8 | Minus |
| 3L | 28110227 | 3L | 3900848..3901075 | 236..9 | 585 | 83.8 | Minus |
| X | 23542271 | X | 6277149..6277381 | 240..8 | 580 | 83.3 | Minus |
| X | 23542271 | X | 6278294..6278521 | 235..8 | 570 | 83.3 | Minus |
| X | 23542271 | X | 6278522..6278748 | 235..9 | 565 | 83.3 | Minus |
| X | 23542271 | X | 6277838..6278065 | 235..8 | 555 | 82.9 | Minus |
| X | 23542271 | X | 6278066..6278293 | 235..8 | 555 | 82.9 | Minus |
| X | 23542271 | X | 6282957..6283184 | 235..8 | 540 | 82.5 | Minus |
| X | 23542271 | X | 6282729..6282956 | 235..8 | 510 | 81.6 | Minus |
| X | 23542271 | X | 6282501..6282728 | 235..8 | 480 | 80.7 | Minus |
| X | 23542271 | X | 6282306..6282500 | 202..8 | 450 | 82.1 | Minus |
| X | 23542271 | X | 6280764..6280882 | 127..9 | 220 | 79 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:18:35 has no hits.
MXO52762.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:17 Download gff for
MXO52762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5271-PA | 1..471 | 9..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:57 Download gff for
MXO52762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS27A-RA | 56..529 | 9..485 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:35 Download gff for
MXO52762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS27A-RA | 56..529 | 9..485 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:35 Download gff for
MXO52762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10409731..10410051 | 9..329 | 100 | -> | Plus |
| 2L | 10410241..10410393 | 330..485 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:57 Download gff for
MXO52762.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10410241..10410393 | 330..485 | 97 | | Plus |
| arm_2L | 10409731..10410051 | 9..329 | 100 | -> | Plus |
