MXO52764.5prime Sequence
579 bp (468 high quality bases) assembled on 2007-04-02
> MXO52764.5prime
CAGTCGACATGCTGGCTGTGAGATTGGCCAATTTGCCATGCGTTAAATGC
CTTCTGGCGGCCAAATGCAATGCGACCTATGAGTACGAAGGCTGGTCGAT
TGTCCAGGAAGCGGTCTGCACCGGCGATGTGGACATACTGACGGCCATCA
TCGAAGTCCGGGATCTCCAGCGTCATGTCCAGCGGGTTACGCATGTGCCT
AAGCTGCTGCAGCACCTATTGGACGCACCAGATTTCTACATCGAGATGAA
GTGGGAATTCACCTCCTGGGTGCCTCTGATGTCGCGTCTCTGTCCCAGCG
ACACCTACAAGGTCTACAAGCGGGGAGCCAACGTCCGGATAGATACCACC
CTGCTGGGCTTCGACAACAACACCTGGCAACGGGGCAATCGCTCTTACAT
CTTCAAGGGGGCCAAAGAAACTGCCACGATGATCGAGATCGATCACGATA
CAAACGAAGTAATGGTGGAGGAGATGAGCAGCGATATCGGTGATATTGTG
GCCATTCCCACAGCCTTGGGCACCGTGAGGGCGCGCCCTCATGCCCGGTG
ATCACGAACAACATCGAGATGGACAGATT
MXO52764.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-PC | 1914 | CG15118-RC | 136..664 | 9..537 | 2595 | 99.6 | Plus |
| CG15118-PA | 1914 | CG15118-RA | 136..664 | 9..537 | 2595 | 99.6 | Plus |
| CG15118-PB | 1914 | CG15118-RB | 136..664 | 9..537 | 2595 | 99.6 | Plus |
| CG15118-PD | 1779 | CG15118-RD | 1..529 | 9..537 | 2595 | 99.6 | Plus |
| CG15118-PC | 1914 | CG15118-RC | 672..703 | 544..575 | 160 | 100 | Plus |
| CG15118-PA | 1914 | CG15118-RA | 672..703 | 544..575 | 160 | 100 | Plus |
| CG15118-PB | 1914 | CG15118-RB | 672..703 | 544..575 | 160 | 100 | Plus |
| CG15118-PD | 1779 | CG15118-RD | 537..568 | 544..575 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RE | 2823 | CG15118-RE | 262..829 | 9..575 | 2740 | 99.1 | Plus |
| CG15118-RD | 2345 | CG15118-RD | 79..646 | 9..575 | 2740 | 99.1 | Plus |
| CG15118-RB | 2528 | CG15118-RB | 262..829 | 9..575 | 2740 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19136323..19136637 | 414..100 | 1575 | 100 | Minus |
| 2R | 25286936 | 2R | 19136094..19136255 | 575..415 | 685 | 96.3 | Minus |
| 2R | 25286936 | 2R | 19136695..19136785 | 99..9 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:17 has no hits.
MXO52764.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:18 Download gff for
MXO52764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-PB | 131..708 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:35 Download gff for
MXO52764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RB | 257..834 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:59 Download gff for
MXO52764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RB | 257..834 | 1..579 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:59 Download gff for
MXO52764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19136089..19136255 | 415..579 | 96 | <- | Minus |
| 2R | 19136323..19136637 | 100..414 | 100 | <- | Minus |
| 2R | 19136695..19136790 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:35 Download gff for
MXO52764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15023594..15023760 | 415..579 | 96 | <- | Minus |
| arm_2R | 15023828..15024142 | 100..414 | 100 | <- | Minus |
| arm_2R | 15024200..15024295 | 1..99 | 95 | | Minus |
