MXO52766.5prime Sequence
768 bp (768 high quality bases) assembled on 2007-04-02
> MXO52766.5prime
CAGTCGACATGCCACGGGGAAAACGCCGAGCTGCAGATACTATTAGCGAC
AACATGGATCATGGTCAACCGAAGAGGGCCCGAACCAGCTACACCAGCAT
ACCCACACAACAGAGCAGCAGACGCCATATCAGATTGGAAGATGGCTTCA
GTCAAAAGCGTTGCATGGCCTGGTTCCAGGAGTACACAACACCAGATGAA
CCGGAGACATTGGGTCCCGATGGCATGGAAAAATTCTGCGAGGATATCGG
CGTGGAGCCCGAGAATATTGTGATGCTGGTGCTGGCCTACAAAATGGGCG
CCACCCAGATGGGCTTCTTCAGCCAGCAGGAGTGGCTAAAGGGCCTCACA
GAACTCGACTGCGATTCGGCAGCGAAAATGGTTGTGAAATTGGACTATCT
GCGCAGCATACTCAACGATCCCAACTCCTTTAAAAGCATCTACAGATACG
CCTACGACTTTGCCAAGGACTCGGACCAACGGTGTATGGATATACTCACT
GCCAAAGCCATGCTTCAACTACTTTTGGGCAAACATTGGCCTCTGTATCC
ACAGTTCGCACAGTTTCTAGAGCAATCAAAGTACAAGGCGATCAACAAAG
ATCAGTGGTGTAATATTCTCGAGTTCTCGCGCACCATTAGCATTGATCTA
TCAAACTACGATATCGACGGAGCTTGGCCCGTCATGCTGGATGAGTTTGT
TGAATGGCTGCGCCTGCAGCGGAGTCAGGTCACCTCCACAACCGGATCTA
GCGCAAGCTTTCTAGACC
MXO52766.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6597-PA | 747 | CG6597-RA | 1..744 | 9..752 | 3720 | 100 | Plus |
| CG6597-PB | 747 | CG6597-RB | 1..744 | 9..752 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6597-RE | 1289 | CG6597-RE | 174..918 | 8..752 | 3725 | 100 | Plus |
| CG6597-RB | 1947 | CG6597-RB | 515..1259 | 8..752 | 3725 | 100 | Plus |
| CG6597-RA | 1295 | CG6597-RA | 180..924 | 8..752 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20308093..20308348 | 213..468 | 1280 | 100 | Plus |
| 3L | 28110227 | 3L | 20308407..20308617 | 466..676 | 1055 | 100 | Plus |
| 3L | 28110227 | 3L | 20303232..20303345 | 8..121 | 570 | 100 | Plus |
| 3L | 28110227 | 3L | 20307828..20307924 | 119..215 | 485 | 100 | Plus |
| 3L | 28110227 | 3L | 20308747..20308823 | 676..752 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:40 has no hits.
MXO52766.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:19 Download gff for
MXO52766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6597-PB | 1..747 | 9..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:27 Download gff for
MXO52766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6597-RA | 172..924 | 1..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:20 Download gff for
MXO52766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6597-RA | 172..924 | 1..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:20 Download gff for
MXO52766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20308409..20308616 | 468..675 | 100 | -> | Plus |
| 3L | 20308747..20308823 | 676..752 | 100 | | Plus |
| 3L | 20303224..20303345 | 1..121 | 96 | -> | Plus |
| 3L | 20307831..20307922 | 122..213 | 100 | -> | Plus |
| 3L | 20308094..20308347 | 214..467 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:27 Download gff for
MXO52766.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20296324..20296445 | 1..121 | 96 | -> | Plus |
| arm_3L | 20300931..20301022 | 122..213 | 100 | -> | Plus |
| arm_3L | 20301194..20301447 | 214..467 | 100 | -> | Plus |
| arm_3L | 20301509..20301716 | 468..675 | 100 | -> | Plus |
| arm_3L | 20301847..20301923 | 676..752 | 100 | | Plus |
