MXO52768.5prime Sequence
726 bp (726 high quality bases) assembled on 2007-04-02
> MXO52768.5prime
CAGTCGACATGCCCAGGGTCACCTTTGTCGATTCCGCTCCCATGGTGCTC
AAGGAGACCAACATCAACAAGATGCACACTCCATCCGAGGGCATGTTGCA
CATCAATCCCAAGGATTTTGTCAACTTCAATTCCAAGAATGCGGAAGCCA
CGATGACCATCAAGTCTATTGCCACCTCGGCAGTGACGTACAAGATCCAA
ACCACATCGCCGGAGAAGTTCCGTGTGCGACCACGTTGCGGCATCATCCA
GCCCAATCAGGAGGCCACCATCAACATATGGTTGAAGTCGGAGCACAAGC
TTAGTGACGACAGCAAGGATAAGTTCCTGGTGATGGCTATGGTCGCGCCA
GGCGGTGAATGCGGTGGCGCCGATGTGACCGAGCTGTGGCGGAGCAAATC
CCCCACATCTGCGGATGTGGAGCAGCATCGACTGGTCTGCCGCTTCGATG
AGAACAAATCAAAAGCGCAGCTAGATTGCGCAAGCAAGTCCAGTAAGGCC
AGCGTGGATTGCAGCAAGAAGTCCGGTGCTGGCGTAGATCCAGCTACGGC
AATGGAGCGTCAGTTGGCATTCACCCAGAACCTGCAATACGTGACGCTGG
CGCTGTTGTTCCTGTTGTTTGCCGGCTTCGGCTTTCTGATGTACCAGCAG
CTCGGCCAGCACGCCGCTACCTGTCCCAAGGCAACGGCGTATTCGTGCGC
TAAGCGCAAAGCAAGCTTTCTAGACC
MXO52768.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33523-PA | 705 | CG33523-RA | 1..702 | 9..710 | 3510 | 100 | Plus |
| CG33523-PD | 1497 | CG33523-RD | 801..1494 | 17..710 | 3470 | 100 | Plus |
| CG33523-PC | 723 | CG33523-RC | 28..720 | 18..710 | 3465 | 100 | Plus |
| CG33523-PB | 621 | CG33523-RB | 1..618 | 93..710 | 3090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33B-RA | 1508 | CG33523-RA | 188..889 | 9..710 | 3510 | 100 | Plus |
| Vap-33B-RE | 2672 | CG33523-RE | 1141..1835 | 16..710 | 3475 | 100 | Plus |
| Vap-33B-RF | 2574 | CG33523-RF | 1044..1737 | 17..710 | 3470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5928702..5929040 | 193..531 | 1695 | 100 | Plus |
| 3L | 28110227 | 3L | 5929104..5929283 | 531..710 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 5928536..5928640 | 90..194 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 5928223..5928297 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:42 has no hits.
MXO52768.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:20 Download gff for
MXO52768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-PA | 1..705 | 9..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:28 Download gff for
MXO52768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RA | 181..897 | 1..719 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:01 Download gff for
MXO52768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33B-RA | 181..897 | 1..719 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:01 Download gff for
MXO52768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5928215..5928296 | 8..90 | 95 | -> | Plus |
| 3L | 5928537..5928640 | 91..194 | 100 | -> | Plus |
| 3L | 5928704..5929039 | 195..530 | 100 | -> | Plus |
| 3L | 5929104..5929291 | 531..719 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:28 Download gff for
MXO52768.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5921315..5921396 | 8..90 | 95 | -> | Plus |
| arm_3L | 5921637..5921740 | 91..194 | 100 | -> | Plus |
| arm_3L | 5921804..5922139 | 195..530 | 100 | -> | Plus |
| arm_3L | 5922204..5922391 | 531..719 | 97 | | Plus |
