MXO52769.5prime Sequence
825 bp (758 high quality bases) assembled on 2007-04-02
> MXO52769.5prime
CAGTCGACATGGGCAAGGAAAAGATTCACATTAACATTGTCGTGATCGGA
CACGTCGATTCCGGTAAGTCGACCACCACCGGACACTTGATCTACAAGTG
CGGTGGTATCGACAAGCGTACCATCGAGAAGTTCGAGAAGGAGGCCCAGG
AGATGGGAAAGGGATCCTTCAAGTACGCCTGGGTTTTGGATAAGTTGAAG
GCTGAGCGCGAGCGTGGTATCACCATCGATATCGCCCTGTGGAAGTTCGA
AACTGCCAAGTACTACGTGACCATCATTGATGCCCCCGGACACAGGGATT
TCATCAAGAACATGATCACTGGTACCTCGCAGGCCGATTGCGCCGTGCTG
ATTGTCGCCGCCGGAACCGGAGAATTCGAGGCAGGTATCTCGAAGAACGG
CCAGACCCGCGAGCACGCCCTGCTCGCCTTCACCCTGGGTGTGAAGCAGC
TGATCGTTGGTGTGAACAAGATGGACTCCTCCGAGCCACCATACAGCGAG
GCCCGTTATGAGGAAATCAAGAAGGAAGTGTCCTCTTACATCAAGAAGAT
CGGCTACAACCCAGCCCGCCGTTGCCTTCGTGCCCATTTCCGGATGGCAC
GGCGACAACATGTTGGAACCCTCTACCAACATGCCCTGGTTCAAGGGATG
GAAGGTGGAGCGCAAGGAGGGTAACGCTGACGGCAAGACCCTGATCGATG
CCCTCGATGCCATCCTTCCCCCAGCCCGTCCCACCGACAAGGCCCTGCGT
CTGCCCCTGCAGGATGTGTACAAAATTGGCGGTATTGGAACAGTACCCGT
GGGTCGTGTGGAGACTGGTGTGCTG
MXO52769.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8280-PA | 1392 | Ef1alpha48D-RA | 1..558 | 9..566 | 2790 | 100 | Plus |
| CG8280-PB | 1392 | Ef1alpha48D-RB | 1..558 | 9..566 | 2790 | 100 | Plus |
| CG8280-PA | 1392 | Ef1alpha48D-RA | 557..816 | 566..825 | 1300 | 100 | Plus |
| CG8280-PB | 1392 | Ef1alpha48D-RB | 557..816 | 566..825 | 1300 | 100 | Plus |
| CG1873-PA | 1389 | Ef1alpha100E-RA | 52..443 | 60..451 | 835 | 88.5 | Plus |
| CG1873-PB | 1389 | Ef1alpha100E-RB | 52..443 | 60..451 | 835 | 88.5 | Plus |
| CG1873-PC | 1389 | Ef1alpha100E-RC | 52..443 | 60..451 | 835 | 88.5 | Plus |
| CG1873-PD | 1389 | Ef1alpha100E-RD | 52..443 | 60..451 | 835 | 88.5 | Plus |
| CG1873-PA | 1389 | Ef1alpha100E-RA | 457..551 | 465..559 | 250 | 90.5 | Plus |
| CG1873-PB | 1389 | Ef1alpha100E-RB | 457..551 | 465..559 | 250 | 90.5 | Plus |
| CG1873-PC | 1389 | Ef1alpha100E-RC | 457..551 | 465..559 | 250 | 90.5 | Plus |
| CG1873-PD | 1389 | Ef1alpha100E-RD | 457..551 | 465..559 | 250 | 90.5 | Plus |
| CG1873-PA | 1389 | Ef1alpha100E-RA | 565..599 | 574..608 | 150 | 97.1 | Plus |
| CG1873-PB | 1389 | Ef1alpha100E-RB | 565..599 | 574..608 | 150 | 97.1 | Plus |
| CG1873-PC | 1389 | Ef1alpha100E-RC | 565..599 | 574..608 | 150 | 97.1 | Plus |
| CG1873-PD | 1389 | Ef1alpha100E-RD | 565..599 | 574..608 | 150 | 97.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha48D-RC | 2278 | CG8280-RC | 89..906 | 7..825 | 4070 | 99.9 | Plus |
| Ef1alpha48D-RE | 2076 | CG8280-RE | 129..946 | 7..825 | 4070 | 99.9 | Plus |
| Ef1alpha48D-RD | 1979 | CG8280-RD | 32..849 | 7..825 | 4070 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11893573..11894390 | 7..825 | 4045 | 99.9 | Plus |
| 3R | 32079331 | 3R | 31740347..31741156 | 9..819 | 2205 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:06:49 has no hits.
MXO52769.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:20 Download gff for
MXO52769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8280-PB | 1..816 | 9..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:33 Download gff for
MXO52769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RA | 76..899 | 1..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:04 Download gff for
MXO52769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha48D-RD | 26..849 | 1..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:04 Download gff for
MXO52769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11893567..11894390 | 1..825 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:33 Download gff for
MXO52769.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7781072..7781895 | 1..825 | 99 | | Plus |
