MXO52770.5prime Sequence
745 bp (570 high quality bases) assembled on 2007-04-02
> MXO52770.5prime
CAGTCGACATGTCGGAGGCAGGGCGTTTTAGTTACGTCACCTTTGTCGAT
TCCGCTCCCATGGTGCTCAAGGAGACCAACATCAACAAGATGCACACTCC
ATCCGAGGGCATGTTGCACATCAATCCCAAGGATTTTGTCAACTTCAATT
CCAAGAATGCGGAAGCCACGATGACCATCAAGTCTATTGCCACCTCGGCA
GTGACGTACAAGATCCAAACCACATCGCCGGAGAAGTTCCGTGTGCGACC
ACGTTGCGGCATCATCCAGCCCAATCAGGAGGCCACCATCAACATATGGT
TGAAGTCGGAGCACAAGCTTAGTGACGACAGCAAGGATAAGTTCCTGGTG
ATGGCTATGGTCGCGCCAGGCGGTGAATGCGGTGGCGCCGATGTGACCGA
GCTGTGGCGGAGCAAATCCCCCACATCTGCGGATGTGGAGCAGCATCGAC
TGGTCTGCCGCTTCGATGAGAACAAATCAAAAGCGCAGCTAGATTGCGCA
AGCAAGTCCAGTAAGGCCAGCGTGGATTGCAGCAAGAAGTCCGGTGCTGG
CGTAGATCCAGCTACGGCAATGGAAGCGTCAGTTGGCATTCACCCAGAAC
CTGCAATACGTGACGCTGGCGCTGTTGTTCCTGTTGTTTGCCGGCTTCGG
CTTTCTGATGTACCAGCAGCTCGGCCAGCACGCCGCTACCTGTCCCAAGG
CAACGGCGTATTCGTGCGCTAAGCGCAAAGCAAGCTTTCTAGACC
MXO52770.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33523-PC | 723 | CG33523-RC | 1..566 | 9..574 | 2830 | 100 | Plus |
| CG33523-PD | 1497 | CG33523-RD | 802..1340 | 36..574 | 2695 | 100 | Plus |
| CG33523-PA | 705 | CG33523-RA | 10..548 | 36..574 | 2695 | 100 | Plus |
| CG33523-PB | 621 | CG33523-RB | 1..464 | 111..574 | 2320 | 100 | Plus |
| CG33523-PC | 723 | CG33523-RC | 566..720 | 575..729 | 775 | 100 | Plus |
| CG33523-PD | 1497 | CG33523-RD | 1340..1494 | 575..729 | 775 | 100 | Plus |
| CG33523-PA | 705 | CG33523-RA | 548..702 | 575..729 | 775 | 100 | Plus |
| CG33523-PB | 621 | CG33523-RB | 464..618 | 575..729 | 775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33B-RC | 1656 | CG33523-RC | 100..819 | 9..729 | 3580 | 99.9 | Plus |
| Vap-33B-RE | 2672 | CG33523-RE | 1143..1835 | 36..729 | 3445 | 99.9 | Plus |
| Vap-33B-RF | 2574 | CG33523-RF | 1045..1737 | 36..729 | 3445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5928702..5929040 | 211..549 | 1695 | 100 | Plus |
| 3L | 28110227 | 3L | 5929104..5929283 | 549..729 | 855 | 99.4 | Plus |
| 3L | 28110227 | 3L | 5928536..5928640 | 108..212 | 525 | 100 | Plus |
| 3L | 28110227 | 3L | 5928224..5928297 | 36..109 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:21:47 has no hits.
MXO52770.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:21 Download gff for
MXO52770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-PC | 1..723 | 9..733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:33 Download gff for
MXO52770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33523-RC | 100..827 | 9..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:13 Download gff for
MXO52770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33B-RC | 100..827 | 9..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:13 Download gff for
MXO52770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5927881..5927907 | 9..35 | 100 | -> | Plus |
| 3L | 5928224..5928296 | 36..108 | 100 | -> | Plus |
| 3L | 5928537..5928640 | 109..212 | 100 | -> | Plus |
| 3L | 5928704..5929039 | 213..548 | 100 | -> | Plus |
| 3L | 5929104..5929291 | 549..738 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:33 Download gff for
MXO52770.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5920981..5921007 | 9..35 | 100 | -> | Plus |
| arm_3L | 5921324..5921396 | 36..108 | 100 | -> | Plus |
| arm_3L | 5921637..5921740 | 109..212 | 100 | -> | Plus |
| arm_3L | 5921804..5922139 | 213..548 | 100 | -> | Plus |
| arm_3L | 5922204..5922391 | 549..738 | 97 | | Plus |
