MXO52771.5prime Sequence
342 bp (287 high quality bases) assembled on 2007-04-02
> MXO52771.5prime
CAGTCGANATGGGACAGACTGCCACCCAAAGAAAGATGCACCANAGTAGN
AATAANAACAACAAGGAGGAACCACCACAACCGGCTTCACAGTTTGGAAC
CCGAAAAACCTCTACCCGNAAATCGAGTTCGTCTTCGAAACATTACCCCA
CATTGGTGCAACCATTGCGTAAGGATGAGCTCTCTCTCCTGCGAGATTCA
CTTCTGCGCAATGGAAGCATTATGCGCAAGAACCCGGAACGTCGTCCGGT
AACGATCAGTGAGCTGAAACCAGTTAATACCGGGCAGGGGACTTCGGGTA
GTGTCCTGCCTATTACAGCAGATTATGTTGCTGGAGGGAGCA
MXO52771.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8201-PI | 2982 | par-1-RI | 99..314 | 107..322 | 1036 | 99 | Plus |
| CG8201-PO | 2982 | par-1-RO | 99..314 | 107..322 | 1036 | 99 | Plus |
| CG8201-PQ | 1074 | par-1-RQ | 99..314 | 107..322 | 1036 | 99 | Plus |
| CG8201-PJ | 2982 | par-1-RJ | 99..314 | 107..322 | 1036 | 99 | Plus |
| CG8201-PH | 2982 | par-1-RH | 99..314 | 107..322 | 1036 | 99 | Plus |
| CG8201-PI | 2982 | par-1-RI | 26..91 | 34..99 | 273 | 95.4 | Plus |
| CG8201-PO | 2982 | par-1-RO | 26..91 | 34..99 | 273 | 95.4 | Plus |
| CG8201-PQ | 1074 | par-1-RQ | 26..91 | 34..99 | 273 | 95.4 | Plus |
| CG8201-PJ | 2982 | par-1-RJ | 26..91 | 34..99 | 273 | 95.4 | Plus |
| CG8201-PH | 2982 | par-1-RH | 26..91 | 34..99 | 273 | 95.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| par-1-RQ | 3321 | CG8201-RQ | 611..944 | 9..342 | 1356 | 93.4 | Plus |
| par-1-RH | 4868 | CG8201-RH | 475..808 | 9..342 | 1356 | 93.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19464642..19464975 | 9..342 | 1356 | 93.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:51 has no hits.
MXO52771.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:21 Download gff for
MXO52771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8201-PO | 19..333 | 27..341 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:13 Download gff for
MXO52771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-1-RH | 493..807 | 27..341 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:11 Download gff for
MXO52771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| par-1-RH | 493..807 | 27..341 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:11 Download gff for
MXO52771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19464660..19464974 | 27..341 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:13 Download gff for
MXO52771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15352165..15352479 | 27..341 | 94 | | Plus |
