MXO52772.5prime Sequence
655 bp (616 high quality bases) assembled on 2007-04-02
> MXO52772.5prime
CAGTCGACATGTCTCGGCATTTGGAAAACTTCTTTACCAACAGAGTACGG
CGACAACTGCAAGTGGCTGAACAAATGACCACCGCCGCCTCCACATCGCA
GCATGCGACATCGTCCTCCACAATGATGGCGGGCTCTGGATCCTTGGCGA
CCTCGTCGTCCGCCGCTGCCCCCACAACCACGCCCAGCAGCTCGGCCGTT
CGCGCCCTGGCCATGGAGTACAAGTCGCTGCAGGAAGAGCCGGTGGAGGG
ATTCCGCGTCAAGCTGATCAACGACGACAATCTGTTCGAATGGGAGGTGG
CAATCTTCGGGCCACCGGACACCCTCTACCAGGGCGGCTACTTCAAGGCG
CACATGAAGTTCCCGCACGACTATCCATACTCACCGCCATCCATACGCTT
CCTGACGAAGGTCTGGCATCCGAATGTTTACGAGAACGGTGATCTGTGCA
TATCCATACTACATCCGCCGGTGGATGATCCGCAGAGTGGCGAGCTGCCC
TGCGAACGCTGGAATCCCACGCAGAATGTGCGCACCATCCTGCTGTCGGT
CATATCGCTGCTCAATGAGCCGAACACATTCTCGCCGGCCAACGTGGACG
CCTCGGTCATGTACCGCCGATGGCGGGACTCACAGGGTAAGGAACATGAG
TATCC
MXO52772.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7656-PC | 1026 | CG7656-RC | 1..647 | 9..655 | 3185 | 99.6 | Plus |
| CG7656-PA | 954 | CG7656-RA | 1..562 | 75..636 | 2810 | 100 | Plus |
| CG7656-PB | 810 | CG7656-RB | 141..418 | 359..636 | 1390 | 100 | Plus |
| CG7656-PB | 810 | CG7656-RB | 1..141 | 75..215 | 705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7656-RD | 1410 | CG7656-RD | 234..883 | 6..655 | 3220 | 99.7 | Plus |
| CG7656-RF | 2027 | CG7656-RF | 234..864 | 6..636 | 3155 | 100 | Plus |
| CG7656-RE | 1234 | CG7656-RE | 118..733 | 40..655 | 3035 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15587004..15587634 | 636..6 | 3155 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:04:21 has no hits.
MXO52772.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:22 Download gff for
MXO52772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-PC | 1..647 | 9..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:14 Download gff for
MXO52772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RD | 230..883 | 1..655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:36 Download gff for
MXO52772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7656-RD | 230..883 | 1..655 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:36 Download gff for
MXO52772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15586996..15587637 | 1..648 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:14 Download gff for
MXO52772.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15580096..15580737 | 1..648 | 98 | | Minus |
