MXO52773.5prime Sequence
876 bp (773 high quality bases) assembled on 2007-04-02
> MXO52773.5prime
CAGTCGACATGGCGACGAGGAATCTGTTGGCCATCCTTCTTTTGGCCAGC
ATCTGCATGACCCAGGCATATCCGGCTTTGTTGCCCTACATCTACAATCC
TTCCAAGCGCAGCGGTGATACGGCTTTCCCCCAAATCGAGGACGATGTAA
GTGAACTGGACCAGCTGCGGAATGAACCGGGAGCGGTGATGGCCAAGCGT
CAGCACGATGGAAGTACAGCCCGCACCACCACTACCACCAAGGAGAGTGT
CGAGGAGGTCGCCGCTGTTCCCGAGCCAGGTGCACAACCAAATGCGAATA
TTATGCCCGACTTGGAGAGGCAGTTGGAGGTGGCGACGCCTCTGATTTCC
ACCACTACAACCACTAGCACGTCGGCCACCACCACTACGGCGACGTCCAA
GGAGGAGGGCGAAAGGTCCCAGCTGGAGGAGCCGAAGACGCAGATCAAAA
CCGTAGTGGAGCCGACGGCCCATGCGAAGAACGCCAAAAGCTTCTTGCGT
AGTCCGAATGGTCAGTACTCTTCGTTCGACATGGCCCAGTATATTTTTTG
GACTGGAGATGAAACAGCTGTGGTAAAAGCCGTGGAAGAACTGGTTGAGG
GGAAAGTGATCACTCGGGAGAGCGCCCTGAAGTTCCTGCAGGACATTCGG
CTGGGAATAGAGTTCTTGCAGCGGTCCTATGCCAATCGAATTTTCCCCGA
AGAGGTTCGCCAGAATCAGTTAAAGCGCCACAGTCCCGCCATTACCACGC
CCCCAGCATCCACTACGACCACGACGACAACAAGCACCACCACAACCACA
GAAAAGCCATTCCCAGCAGTGCACGAATCCGGTTCGGGATCAGGAATCGA
GCGAGGCGCCGCANGAGTCCCTGCCG
MXO52773.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-PF | 1275 | CG9813-RF | 1..862 | 9..870 | 4266 | 99.7 | Plus |
| CG9813-PC | 1275 | CG9813-RC | 1..862 | 9..870 | 4266 | 99.7 | Plus |
| CG9813-PE | 1671 | CG9813-RE | 1..471 | 9..479 | 2355 | 100 | Plus |
| CG9813-PB | 1671 | CG9813-RB | 1..471 | 9..479 | 2355 | 100 | Plus |
| CG9813-PA | 1671 | CG9813-RA | 1..471 | 9..479 | 2355 | 100 | Plus |
| CG9813-PD | 1671 | CG9813-RD | 1..471 | 9..479 | 2355 | 100 | Plus |
| CG9813-PE | 1671 | CG9813-RE | 865..1258 | 477..870 | 1926 | 99.4 | Plus |
| CG9813-PB | 1671 | CG9813-RB | 865..1258 | 477..870 | 1926 | 99.4 | Plus |
| CG9813-PA | 1671 | CG9813-RA | 865..1258 | 477..870 | 1926 | 99.4 | Plus |
| CG9813-PD | 1671 | CG9813-RD | 865..1258 | 477..870 | 1926 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9813-RC | 2174 | CG9813-RC | 106..968 | 8..870 | 4289 | 99.8 | Plus |
| CG9813-RF | 2179 | CG9813-RF | 111..973 | 8..870 | 4289 | 99.8 | Plus |
| CG9813-RG | 2603 | CG9813-RG | 106..577 | 8..479 | 2360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13378402..13378784 | 479..97 | 1915 | 100 | Minus |
| 3R | 32079331 | 3R | 13374519..13374781 | 870..608 | 1289 | 99.2 | Minus |
| 3R | 32079331 | 3R | 13377533..13377663 | 608..478 | 655 | 100 | Minus |
| 3R | 32079331 | 3R | 13379003..13379091 | 96..8 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:53:32 has no hits.
MXO52773.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:22 Download gff for
MXO52773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-PC | 1..866 | 9..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:06 Download gff for
MXO52773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 108..977 | 1..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:18 Download gff for
MXO52773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9813-RF | 108..977 | 1..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:18 Download gff for
MXO52773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13374513..13374780 | 609..876 | 98 | <- | Minus |
| 3R | 13377533..13377661 | 480..608 | 100 | <- | Minus |
| 3R | 13378402..13378784 | 97..479 | 100 | <- | Minus |
| 3R | 13379003..13379094 | 1..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:06 Download gff for
MXO52773.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9200235..9200502 | 609..876 | 98 | <- | Minus |
| arm_3R | 9203255..9203383 | 480..608 | 100 | <- | Minus |
| arm_3R | 9204124..9204506 | 97..479 | 100 | <- | Minus |
| arm_3R | 9204725..9204816 | 1..96 | 95 | | Minus |
