MXO52779.5prime Sequence
416 bp (336 high quality bases) assembled on 2007-04-02
> MXO52779.5prime
CAGTCGACATGGTACAGCAGGGCCCCGATGCGACGAACTTTGGTCTGCGG
AGCGACTACTCCAGTGAGAACGGCGATCATCCATCGTTGTTCGATACCCC
TAAGGATGGGGATCAGCCGGATATGTGTGCCTTTTGCCTGGATCGCATAC
AGAATCCAGAGAAGCTGCACTGCAATCATGCGTTCTGCAAAAGCTGTTTA
GCACTGTACAGGGAAGCTCGCAACTGGGTGGCCAAGCGTTGCCCAATCTG
TCGGAGCAGCCTGGACATGGATGGCCAGGTGTCCAGGCAGTTCCACGATA
ACTGGCGTCTATTTGGTATTATGATGGTACCGCTGATGGTGCTCAGTCTG
GGCCCCTTTTATTTGCTGTTGCTTTTTTGCCCCCCCCCCCCAGACCAGTC
GTTTGGCGCAAAAAAA
MXO52779.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17048-PA | 375 | CG17048-RA | 93..367 | 101..375 | 1375 | 100 | Plus |
| CG17048-PA | 375 | CG17048-RA | 1..89 | 9..97 | 420 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17048-RB | 712 | CG17048-RB | 167..533 | 9..375 | 1775 | 98.9 | Plus |
| CG17048-RA | 592 | CG17048-RA | 167..533 | 9..375 | 1775 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13354043..13354333 | 299..9 | 1395 | 98.6 | Minus |
| 2R | 25286936 | 2R | 13353817..13353892 | 375..300 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:29 has no hits.
MXO52779.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:24 Download gff for
MXO52779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17048-PA | 1..371 | 9..379 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:40 Download gff for
MXO52779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17048-RA | 185..559 | 1..379 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:04 Download gff for
MXO52779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17048-RA | 163..537 | 1..379 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:04 Download gff for
MXO52779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13353813..13353892 | 300..379 | 97 | <- | Minus |
| 2R | 13354043..13354337 | 1..299 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:40 Download gff for
MXO52779.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9241318..9241397 | 300..379 | 97 | <- | Minus |
| arm_2R | 9241548..9241842 | 1..299 | 97 | | Minus |
