Clone MXO52781 Report

Search the DGRC for MXO52781

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:527
Well:81
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptBobA-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO52781.5prime Sequence

258 bp (258 high quality bases) assembled on 2007-04-02

> MXO52781.5prime
CAGTCGACATGTTCACCGAAACCGCTCTTGTTTCCAACTTCAATGGAGTG
ACAGAGAAGAAATCTCTTACCGGCGCCTCCACCAACCTGAAGAAGCTGCT
GAAGACCATCAAGAAGGTCTTCAAGAACTCCAAGCCTTCGAAGGAGATTC
CGATCCCCAACATCATCTACTCTTGCAATACTGAGGAGGAGCACCAGAAT
TGGCTCAACGAACAACTGGAGGCCATGGCAATCCATCTTCACGCAAGCTT
TCTAGACC

MXO52781.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12487-PA 237 BobA-RA 1..234 9..242 1170 100 Plus
CG13465-PA 237 CG13465-RA 8..234 16..242 1110 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
BobA-RA 627 CG12487-RA 58..291 9..242 1170 100 Plus
CG13465-RA 602 CG13465-RA 40..273 9..242 1125 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14945835..14946068 242..9 1170 100 Minus
3L 28110227 3L 14944059..14944292 242..9 1125 98.7 Minus
Blast to na_te.dros performed on 2014-11-28 21:04:32 has no hits.

MXO52781.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:25 Download gff for MXO52781.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12487-PA 1..237 9..245 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:23 Download gff for MXO52781.5prime
Subject Subject Range Query Range Percent Splice Strand
BobA-RA 51..297 1..250 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:41 Download gff for MXO52781.5prime
Subject Subject Range Query Range Percent Splice Strand
BobA-RA 51..297 1..250 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:41 Download gff for MXO52781.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14945829..14946075 1..250 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:23 Download gff for MXO52781.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14938929..14939175 1..250 96   Minus