MXO52784.5prime Sequence
749 bp (726 high quality bases) assembled on 2007-04-02
> MXO52784.5prime
CAGTCGACATGCAGAAGCGTAAACGCCGCTTCCTAAAAAAAGGGCAGAAC
TTGATGATGCTGCGGACGCTTCGATTGGAAAAAGCCAAAAAGGCTGAGCT
CCAGAAAGAGCTGACTATTTACAATGCTTTAACCAAATGTAAATTAACCT
CCTCGGAAGTTGTTCCCGACGTCAATAAGTTACTTAAGAGCAATACGATA
GGAAACCTGGTGGAGTCCCTTGGCCACGGAAATAAGAACAAAATTCGAGC
CGACGCCGCAGATGCTTTAGCTCATATAGCCAGTGGCTCATCGGAGCACT
CAAATTTAATTGCGAAGGCTGGCGCCGTGCCACGATTGATTCGCCTTCTT
CAGTCACCCGATCCTGAAGTCTGCGAATTGGGTATACTGAGTTTGGGGAA
TCTCTTGCACTTTGCTCCGAACCTCCGTGACTATATCATAAGACACGGAC
TTATGCAAAAGCTGATGTCTATTATTCAGGATAAAAGCACTTGCACTTTA
ATGTTGAGTCATGTAACCTGGGTTCTAAGAAAACTGTGCATAAGCTCTCA
ACCATCGCCACCTGATAATGCAGCTGAGATCATTCAGGCATTGAACATAG
TATTGTACAACCCAGAGGCCAACGTTTTAGAGGACGCACTTATGGCAGTG
CGTAATTTGGCCCATGGAAATGAAACGATTCAAATGTTACTTGATTTTGA
AGTTGTACCCAGGATCATATACTTGCTGGAGCATCCGAACGTTACGGTT
MXO52784.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:14:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10478-PA | 1329 | CG10478-RA | 1..741 | 9..749 | 3630 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-RA | 1509 | CG10478-RA | 71..811 | 9..749 | 3660 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6010144..6010584 | 749..309 | 2160 | 99.3 | Minus |
| 3L | 28110227 | 3L | 6010652..6010951 | 308..9 | 1500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:01:44 has no hits.
MXO52784.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:26 Download gff for
MXO52784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-PA | 1..741 | 9..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:12 Download gff for
MXO52784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..811 | 9..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:48 Download gff for
MXO52784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..811 | 9..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:48 Download gff for
MXO52784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6010144..6010584 | 309..749 | 99 | <- | Minus |
| 3L | 6010652..6010951 | 9..308 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:12 Download gff for
MXO52784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6003244..6003684 | 309..749 | 99 | <- | Minus |
| arm_3L | 6003752..6004051 | 9..308 | 100 | | Minus |
