MXO52785.5prime Sequence
291 bp (291 high quality bases) assembled on 2007-04-02
> MXO52785.5prime
CAGTCGACATGTCTGATCGCAAGGCCGTGATTAAAAATGCCGACATGAGC
GAGGAGATGCAGCAGGATGCCGTCGATTGTGCGACACAGGCCCTCGAGAA
GTACAACATTGAAAAGGACATTGCGGCCTACATCAAGAAGGAGTTCGACA
AAAAATACAATCCCACATGGCATTGCATTGTCGGTCGCAACTTTGGATCG
TATGTCACACACGAGACGCGCCACTTTATTTACTTCTATTTGGGCCAGGT
GGCTATTTTACTGTTTAAGAGCGGTGCAAGCTTTCTAGACC
MXO52785.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6998-PB | 270 | ctp-RB | 1..267 | 9..275 | 1335 | 100 | Plus |
CG6998-PD | 270 | ctp-RD | 1..267 | 9..275 | 1335 | 100 | Plus |
CG6998-PA | 270 | ctp-RA | 1..267 | 9..275 | 1335 | 100 | Plus |
CG6998-PC | 270 | ctp-RC | 1..267 | 9..275 | 1335 | 100 | Plus |
CG5450-PA | 270 | Cdlc2-RA | 79..218 | 87..226 | 250 | 87.1 | Plus |
CG5450-PB | 270 | Cdlc2-RB | 79..218 | 87..226 | 250 | 87.1 | Plus |
CG5450-PA | 270 | Cdlc2-RA | 1..59 | 9..67 | 145 | 89.8 | Plus |
CG5450-PB | 270 | Cdlc2-RB | 1..59 | 9..67 | 145 | 89.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ctp-RE | 4061 | CG6998-RE | 216..482 | 9..275 | 1335 | 100 | Plus |
ctp-RC | 4416 | CG6998-RC | 571..837 | 9..275 | 1335 | 100 | Plus |
ctp-RA | 1483 | CG6998-RA | 216..482 | 9..275 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 4698295..4698455 | 115..275 | 805 | 100 | Plus |
2L | 23513712 | 2L | 1344616..1344882 | 9..275 | 720 | 84.6 | Plus |
X | 23542271 | X | 4691737..4691845 | 9..117 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:09 has no hits.
MXO52785.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:27 Download gff for
MXO52785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6998-PA | 1..270 | 9..279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:25 Download gff for
MXO52785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ctp-RA | 208..487 | 1..280 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:05 Download gff for
MXO52785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ctp-RA | 208..487 | 1..280 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:05 Download gff for
MXO52785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 4698297..4698460 | 117..280 | 98 | | Plus |
X | 4691729..4691844 | 1..116 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:25 Download gff for
MXO52785.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 4585762..4585877 | 1..116 | 97 | -> | Plus |
arm_X | 4592330..4592493 | 117..280 | 98 | | Plus |