MXO52786.5prime Sequence
537 bp (486 high quality bases) assembled on 2007-04-02
> MXO52786.5prime
CAGTCGACATGGAAGACAATAACACGAGCAGCAGTGCGGGCGGTGCGTCC
ATCAAACACGAGGATCCATCGGTGACACTCACAATAAGGCTGATTATGCA
AGGAAAGGAGGTTGGTAGTATTATTGGTAAAAAGGGTGAAATTGTCAACA
GATTTCGTGAAGAGTCTGGTGCCAAAATCAACATTTCGGATGGCTCATGC
CCGGAACGTATTGTGACTGTGTCTGGTACAACTAATGCAATCTTTTCGGC
ATTCACGCTCATTACAAAGAAGTTCGAAGAGTGGTGCTCGCAGTTCAATG
ATGTAGGCAAAGTTGGTAAAACTCAAATACCCATTCGATTGATTGTGCCC
GCCAGTCAATGTGGATCGTTAATTGGCAAGAGTGGTTCAAAGATCAAGGA
AATTCGTCAGACCACGGGCTGCTCCATCCAAGTGGCCAGTGAAATGCTAC
CCCATTCCACAGAGCGGGCGGTTACCTTGAGCGGCAGCGCCGAGCAGATC
ACCCAGTGCATCTATCAGATATGTCTTGTCATGTTGG
MXO52786.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7437-PD | 1620 | mub-RD | 1..529 | 9..537 | 2620 | 99.8 | Plus |
| CG7437-PA | 1161 | mub-RA | 1..529 | 9..537 | 2620 | 99.8 | Plus |
| CG7437-PB | 1161 | mub-RB | 1..529 | 9..537 | 2620 | 99.8 | Plus |
| CG7437-PC | 1095 | mub-RC | 1..529 | 9..537 | 2620 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mub-RN | 9527 | CG7437-RN | 841..1370 | 8..537 | 2635 | 99.8 | Plus |
| mub-RL | 2968 | CG7437-RL | 900..1429 | 8..537 | 2635 | 99.8 | Plus |
| mub-RH | 3690 | CG7437-RH | 953..1482 | 8..537 | 2635 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21915260..21915422 | 375..537 | 800 | 99.4 | Plus |
| 3L | 28110227 | 3L | 21914891..21915009 | 163..281 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 21907821..21907921 | 8..108 | 505 | 100 | Plus |
| 3L | 28110227 | 3L | 21915100..21915200 | 280..380 | 490 | 99 | Plus |
| 3L | 28110227 | 3L | 21914774..21914832 | 106..164 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:06 has no hits.
MXO52786.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:27 Download gff for
MXO52786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7437-PC | 1..529 | 9..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:46 Download gff for
MXO52786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RA | 841..1370 | 8..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:13 Download gff for
MXO52786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mub-RH | 953..1482 | 8..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:13 Download gff for
MXO52786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21915261..21915422 | 376..537 | 99 | | Plus |
| 3L | 21907821..21907920 | 8..107 | 100 | -> | Plus |
| 3L | 21914776..21914832 | 108..164 | 100 | -> | Plus |
| 3L | 21914893..21915009 | 165..281 | 100 | -> | Plus |
| 3L | 21915102..21915195 | 282..375 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:46 Download gff for
MXO52786.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21900921..21901020 | 8..107 | 100 | -> | Plus |
| arm_3L | 21907876..21907932 | 108..164 | 100 | -> | Plus |
| arm_3L | 21907993..21908109 | 165..281 | 100 | -> | Plus |
| arm_3L | 21908202..21908295 | 282..375 | 100 | -> | Plus |
| arm_3L | 21908361..21908522 | 376..537 | 99 | | Plus |
