MXO52789.5prime Sequence
785 bp (19 high quality bases) assembled on 2007-04-02
> MXO52789.5prime
CAATCCACATGCCTCATACCCTCAGCAGGGATGGATCATCCGGAGATGAT
TTATGCTTTACTGATGAAGTGAAGATTTTTAAAGACGAAGGACATCGCGA
GGATGAAAAAATATCGTCTGATAACTTATTATTTGAAGAACAGTCTACCT
TATTAGATTTAACTGAAAGTGAGGAAAAGGGTCACGAAATTTCTTGGCCG
GACCACAGCCCTGTTTTTAATAAGCTGGACACCCACACCCCTAGCTTTAT
CATGGGTTACTTAGTTTCTCCTTATTCTTATGCCAATGGTTCTCCCAGTG
GCTTACCGGTAACTATGGCCAACAAAAGTGGACTGCCTCCGTTTTTTTGT
CACAGTGCTGATCCGTTATCATCTCCACCACCAGCGCATTGCGGAGATTC
CTCCATATCAACTGGATCCTAAGATGGGCTTAACTCAACCAGCGCTATAC
CCATTTGCGGGAGGTCAATATCCTTACCCCATGCTAAGTTCATATATGTC
TCACGTGGCATCATGGCACACTCCTTCTGTTTATTCTGCATCTAGTTTTA
TAACTCCTTATCCCTCCTCACTACCAATATCTACTACACTTGCCAGTGAT
TTTCCATTCCGTTTTTCACCTACCCTTTTACCTTCAATACATGCCACATC
GCACCACGTTATAAATGCTCATTCTGCTATTGTGGGGGTTAGCTCTAAAC
AAGAATGCGGTGTTCAGGACCCAGCTCCGAATAATAGATATCCAAGGAAC
CTGCAAGCAAAGCACACATCAAATGCTCAATCAAA
MXO52789.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17964-PH | 2244 | pan-RH | 388..714 | 397..723 | 1385 | 96.9 | Plus |
| CG17964-PE | 2256 | pan-RE | 388..714 | 397..723 | 1385 | 96.9 | Plus |
| CG17964-PD | 2256 | pan-RD | 388..714 | 397..723 | 1385 | 96.9 | Plus |
| CG17964-PB | 2256 | pan-RB | 388..714 | 397..723 | 1385 | 96.9 | Plus |
| CG17964-PC | 2256 | pan-RC | 388..714 | 397..723 | 1385 | 96.9 | Plus |
| CG17964-PF | 2256 | pan-RF | 388..714 | 397..723 | 1385 | 96.9 | Plus |
| CG17964-PA | 2256 | pan-RA | 388..714 | 397..723 | 1385 | 96.9 | Plus |
| CG17964-PG | 2256 | pan-RG | 388..714 | 397..723 | 1385 | 96.9 | Plus |
| CG17964-PI | 1233 | pan-RI | 388..714 | 397..723 | 1385 | 96.9 | Plus |
| CG17964-PH | 2244 | pan-RH | 1..387 | 9..395 | 1335 | 93.7 | Plus |
| CG17964-PE | 2256 | pan-RE | 1..387 | 9..395 | 1335 | 93.7 | Plus |
| CG17964-PD | 2256 | pan-RD | 1..387 | 9..395 | 1335 | 93.7 | Plus |
| CG17964-PB | 2256 | pan-RB | 1..387 | 9..395 | 1335 | 93.7 | Plus |
| CG17964-PC | 2256 | pan-RC | 1..387 | 9..395 | 1335 | 93.7 | Plus |
| CG17964-PF | 2256 | pan-RF | 1..387 | 9..395 | 1335 | 93.7 | Plus |
| CG17964-PA | 2256 | pan-RA | 1..387 | 9..395 | 1335 | 93.7 | Plus |
| CG17964-PG | 2256 | pan-RG | 1..387 | 9..395 | 1335 | 93.7 | Plus |
| CG17964-PI | 1233 | pan-RI | 1..387 | 9..395 | 1335 | 93.7 | Plus |
| CG17964-PH | 2244 | pan-RH | 719..776 | 728..785 | 240 | 96.5 | Plus |
| CG17964-PE | 2256 | pan-RE | 719..776 | 728..785 | 240 | 96.5 | Plus |
| CG17964-PD | 2256 | pan-RD | 719..776 | 728..785 | 240 | 96.5 | Plus |
| CG17964-PB | 2256 | pan-RB | 719..776 | 728..785 | 240 | 96.5 | Plus |
| CG17964-PC | 2256 | pan-RC | 719..776 | 728..785 | 240 | 96.5 | Plus |
| CG17964-PF | 2256 | pan-RF | 719..776 | 728..785 | 240 | 96.5 | Plus |
| CG17964-PA | 2256 | pan-RA | 719..776 | 728..785 | 240 | 96.5 | Plus |
| CG17964-PG | 2256 | pan-RG | 719..776 | 728..785 | 240 | 96.5 | Plus |
| CG17964-PI | 1233 | pan-RI | 719..776 | 728..785 | 240 | 96.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pan-RS | 3101 | CG34403-RS | 697..1473 | 8..785 | 3280 | 94.9 | Plus |
| pan-RR | 8472 | CG34403-RR | 438..1214 | 8..785 | 3280 | 94.9 | Plus |
| pan-RI | 3795 | CG34403-RI | 697..1473 | 8..785 | 3280 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 87014..87167 | 594..747 | 695 | 96.8 | Plus |
| 4 | 1348131 | 4 | 72429..72595 | 8..174 | 640 | 92.2 | Plus |
| 4 | 1348131 | 4 | 82637..82747 | 317..428 | 450 | 95.5 | Plus |
| 4 | 1348131 | 4 | 75068..75166 | 220..318 | 435 | 96 | Plus |
| 4 | 1348131 | 4 | 85711..85800 | 427..516 | 390 | 95.6 | Plus |
| 4 | 1348131 | 4 | 85852..85930 | 515..593 | 350 | 96.2 | Plus |
| 4 | 1348131 | 4 | 72815..72867 | 172..224 | 205 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:56 has no hits.
MXO52789.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:28 Download gff for
MXO52789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17964-PH | 1..773 | 9..782 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:17 Download gff for
MXO52789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RI | 691..1470 | 1..782 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:15 Download gff for
MXO52789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pan-RI | 691..1470 | 1..782 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:15 Download gff for
MXO52789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 85712..85799 | 428..515 | 95 | -> | Plus |
| 4 | 85853..85933 | 516..596 | 95 | -> | Plus |
| 4 | 87017..87166 | 597..746 | 96 | -> | Plus |
| 4 | 72817..72862 | 174..219 | 93 | -> | Plus |
| 4 | 75068..75165 | 220..317 | 95 | -> | Plus |
| 4 | 82638..82746 | 318..427 | 95 | -> | Plus |
| 4 | 94423..94458 | 747..782 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:17 Download gff for
MXO52789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 93443..93488 | 174..219 | 93 | -> | Plus |
| arm_4 | 95694..95791 | 220..317 | 95 | -> | Plus |
| arm_4 | 103264..103372 | 318..427 | 95 | -> | Plus |
| arm_4 | 106338..106425 | 428..515 | 95 | -> | Plus |
| arm_4 | 106479..106559 | 516..596 | 95 | -> | Plus |
| arm_4 | 107643..107792 | 597..746 | 96 | -> | Plus |
| arm_4 | 115049..115084 | 747..782 | 94 | | Plus |
