MXO52791.5prime Sequence
378 bp (378 high quality bases) assembled on 2007-04-02
> MXO52791.5prime
CAGTCGACATGGACGTGTTCCTTATGATCAGGCGGCAAAAGACCACCATC
TTCACGGACGCCAAGGAGAACACAACGGTGGCCGAGCTGAAGCGAATGAT
TGAGGGCATACTAAAGGTGCAGCCCGTGGACCAGCGGTTATACAATCAGG
ACAACGATGTCATGGAGGACGACAGCACGTTGCAGGACTACGGCGTGACG
GTGTCCACGGCCAAGGCGCAGGCTCCGGCACAGCTGGGCTTGACATTCAG
GAACGAGGTGGGCGACTTTGAGACACTGGACATGACACCCTACTCGGCAC
CACCAGACTTACCCGAAGTCATGAAAAACCAAGAGGCCTCGAACGGACAG
GAGCAGGTGGCAGCAAGCTTTCTAGACC
MXO52791.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4204-PA | 357 | Elongin-B-RA | 1..354 | 9..362 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloB-RA | 1207 | CG4204-RA | 395..748 | 9..362 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20578913..20579059 | 251..105 | 735 | 100 | Minus |
| 3R | 32079331 | 3R | 20578681..20578794 | 362..249 | 570 | 100 | Minus |
| 3R | 32079331 | 3R | 20579138..20579233 | 106..11 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:38 has no hits.
MXO52791.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:29 Download gff for
MXO52791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4204-PA | 1..357 | 9..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:50 Download gff for
MXO52791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-B-RA | 388..752 | 1..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:55 Download gff for
MXO52791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloB-RA | 388..752 | 1..367 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:55 Download gff for
MXO52791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20579139..20579241 | 1..105 | 95 | | Minus |
| 3R | 20578677..20578792 | 251..367 | 98 | <- | Minus |
| 3R | 20578914..20579058 | 106..250 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:50 Download gff for
MXO52791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16404399..16404514 | 251..367 | 98 | <- | Minus |
| arm_3R | 16404636..16404780 | 106..250 | 100 | <- | Minus |
| arm_3R | 16404861..16404963 | 1..105 | 95 | | Minus |
