MXO52792.5prime Sequence
601 bp (537 high quality bases) assembled on 2007-04-02
> MXO52792.5prime
CAGTCGACATGAATATAAATCTGCCGAATTTCAATGTGAAGAACCTGGTG
AAGGAGGCGGGCAGCACAATATCACGAGTGGTGCAGCTCACGGAGGAGAA
ACTGGGCACCACGGAGCGCACCGAGTACGACTTGCACTTCCAGAATCTCG
CCGAGCGGGCTGATGTGACCAAGACATGGACGGAGAAGATAGTGCGCGAC
ACAGAGTCGGTGCTGATACCCAATCCTCAGAACCGGGTCGAAGACTTCAT
CTTCGAGAAGATTGAAAAGTCGAAGCCAAAAAGGTTGAGCAACCTAGAGC
ACCTGGCTCTGGACATGATCGAGGCTGGGGGCGATTTCGGGCAGGATTTA
CCCTATGGTCAGGCTCTGATCAAGGTCGGCCAAGCGGAACAGAAACTGGG
CCAGTGCGAGCACGACTTTATAGCCACCTCGGGCATTTGCTTTACACAGC
CGTTGCGCAAGTTCCTAGACGGCGAAATGAAGACAATTGGCAAGGAGCGA
GGCATCCTGGAGACCAAGCGCCTGGATCTGGACGCCTGCAAGAACAGGGT
GAAGAAAGCGCGCAGCATGCTGGGTCAGCAATCGAAAGATGGCATCTCGC
C
MXO52792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9834-PA | 1173 | endoB-RA | 1..593 | 9..601 | 2965 | 100 | Plus |
| CG9834-PB | 1137 | endoB-RB | 1..576 | 9..584 | 2880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EndoB-RC | 2190 | CG9834-RC | 114..706 | 9..601 | 2965 | 100 | Plus |
| EndoB-RA | 2226 | CG9834-RA | 114..706 | 9..601 | 2965 | 100 | Plus |
| EndoB-RD | 2154 | CG9834-RD | 114..689 | 9..584 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19309816..19310316 | 584..84 | 2505 | 100 | Minus |
| 2R | 25286936 | 2R | 19310475..19310552 | 86..9 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:21:53 has no hits.
MXO52792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:25:30 Download gff for
MXO52792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9834-PA | 1..593 | 9..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:37 Download gff for
MXO52792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| endoB-RA | 114..706 | 9..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:16 Download gff for
MXO52792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EndoB-RA | 114..706 | 9..601 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:16 Download gff for
MXO52792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19309682..19309698 | 585..601 | 100 | <- | Minus |
| 2R | 19309816..19310313 | 87..584 | 100 | <- | Minus |
| 2R | 19310475..19310552 | 9..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:37 Download gff for
MXO52792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15197980..15198057 | 9..86 | 100 | | Minus |
| arm_2R | 15197187..15197203 | 585..601 | 100 | <- | Minus |
| arm_2R | 15197321..15197818 | 87..584 | 100 | <- | Minus |
