MXO52813.5prime Sequence
514 bp (514 high quality bases) assembled on 2011-07-08
> MXO52813.5prime
CAGTCGACATGCCCAGCATCAAGTTGCAATCTTCGGATGAGGAGATCTTT
GACACGGATATCCAGATCGCCAAGTGCTCCGGCACTATCAAGACCATGCT
GGAGGACTGCGGCATGGAGGACGATGAGAATGCCATTGTGCCGTTGCCCA
ATGTGAATTCGACGATTCTTCGCAAGGTGCTTACCTGGGCTCACTACCAC
AAGGACGACCCCCAGCCAACGGAGGATGATGAGAGCAAGGAGAAGCGCAC
AGACGACATTATCTCATGGGATGCAGATTTCCTAAAAGTCGACCAGGGCA
CACTGTTTGAGCTGATATTGGCAGCGAACTATCTGGACATTAAGGGCCTT
CTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTAAGGGAAAGACTCC
CGAGGAAATACGCAAGACCTTCAACATTAATTTTTGACTTTTTCGCCCGC
CGAGGAGGAGCAGGTGCGCAAGGAGAACGAGTGGTGCGAGGAGAAGGCAA
GCTTTCTAGACCAT
MXO52813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:06:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpA-RI | 826 | CG16983-RI | 37..522 | 9..496 | 2330 | 98.8 | Plus |
| SkpA-RH | 1544 | CG16983-RH | 755..1240 | 9..496 | 2330 | 98.8 | Plus |
| SkpA-RA | 1087 | CG16983-RA | 298..783 | 9..496 | 2330 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:06:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 657110..657595 | 9..496 | 2285 | 98.4 | Plus |
| 2R | 25286936 | 2R | 12139446..12139797 | 492..139 | 335 | 74.3 | Minus |
| X | 23542271 | X | 19812810..19813228 | 12..427 | 260 | 71.4 | Plus |
| X | 23542271 | X | 19816453..19816565 | 315..427 | 250 | 81.4 | Plus |
| X | 23542271 | X | 19816147..19816292 | 12..157 | 235 | 77.4 | Plus |
| 2L | 23513712 | 2L | 17581473..17581534 | 12..73 | 220 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:06:56 has no hits.
MXO52813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:19:09 Download gff for
MXO52813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpA-RF | 119..610 | 9..502 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:07:57 Download gff for
MXO52813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpA-RD | 683..1174 | 9..502 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:47 Download gff for
MXO52813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpA-RA | 298..789 | 9..502 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:47 Download gff for
MXO52813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 657110..657601 | 9..502 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:07:57 Download gff for
MXO52813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 551143..551634 | 9..502 | 98 | | Plus |
