Clone RE01016 Report

Search the DGRC for RE01016

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:10
Well:16
Vector:pFlc-1
Associated Gene/TranscriptCog7-RA
Protein status:RE01016.pep: gold
Sequenced Size:2356

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31040 2001-11-29 Blastp of sequenced clone
CG7880 2002-01-01 Sim4 clustering to Release 2
CG31040 2003-01-01 Sim4 clustering to Release 3
Cog7 2008-04-29 Release 5.5 accounting
Cog7 2008-08-15 Release 5.9 accounting
Cog7 2008-12-18 5.12 accounting

Clone Sequence Records

RE01016.complete Sequence

2356 bp (2356 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069758

> RE01016.complete
ATACTGCTTGGATCAACGCCATCAACACCATGGATGTTTCGGCTCTTTCG
GAGACAACTTTTAGTCCTGCGGAATGGATAAACGCAAACTACAAGAAGTT
TGTGGAGGAGAATGGTCGCGATGATAGCGAGGCTGCCTCCGCCTTCATCA
GGAGTTACGTGGCCAAGTTGCAGCTGTATATATTCAACGTAAACAATGCT
GTGGAGGAGTCAAGTCGCCAAGTGGTGGCCAGCATGCCAAGGATCGCTAA
GGAATCCGCAGCGCTGCAGGCAGATGTACACCGGCTGCAAGAGAAGATGA
GTGCCATGCGATTGGAGGTAGCTGCAGTGCAAAGCGAAACCGGCGAATGC
ATGGCCACCTTGGAGCGCTTGAACACCAAAAGCCAAAAGCTCCAAGTGGC
CAAGGAATCGCTACAGGAGTCTGATGGCTGGGGAAACCTACTAGCTGAAC
TAGAGGATGGATTTGAACGCAATGATCTAAAGGGAGTCTGTGATAAGCTA
ATAGCCCTGCAAAAGTCCCTGCACGCCCAGGAACAGCTGCCAGGCCACGC
TGAGCGACAGACCCAAGTGGAGGACTTCAAAAACCGCTTGGAGGCGCTTG
CCTCCCCCAGCGTGGTACAGTGCTTTGCTGAAGGCAATACGGAGCAAGCC
CAGCACTTCGTTCAGATCTTCACCAGCATTCAGCGGCTGCCACAGCTGCA
GCAGTATTACCGAGCTGTGCAAAAAAATTTTTGGCAGCAGCAATGGAAGC
AAACTCTGGAGTTGCAGGGCACGGAGTCCCAGCCTCAGCAGCAGCAGTTT
CTTACCCTTTACTACGATCAGCTGCTCGAGCACTGCCAGCGCCAGGTCAA
GTGGTGCTCCAACCTTTTCGGCGAGAACTCCCCGCAGCCCTTCCTGGTTA
TTGCCGAACTATTGCCGGCATTGCAACCCACACGGGATGCCCATATTTTG
CAGCTTTTGAAGACCTCCAATGAAAGATTAGAGATGCTGGCCTTGTTCGC
CAAGGTTAATCACAGTTTTGTGCTGCACTTAAACTCCCTTCTTGAGCAAT
CGCACATAACCTTGTCCGAGGAATTGCATCGCCTGCTCGGTGAGGCGATT
TTCGAGTATTTCCACAAGTTTATCCAACAGTACCCGCGCCTGGAGGAGAC
CCAACTATCCACACAGGTGGATCGCCTTTCCTCCAACCAAGCCACTCCCA
GCGATGGTGTGCGACATCTAGAGGAGAGTACCCGGAAGCTCTACGAGTGG
CTGAAAGAGGCCTGCGAACGTTGTGCCTCTATTACGAGTGATTTGGCTCT
TTGCAAACTTATCACCTTGCTAAACGGCATATTCAAGCGGCAGCTGGAGA
GCTTTGGGCGCATCCAACGTCAGATTGGACTCAGCCTGGGATCCAGCAGC
TATGCGGCTCAGAGTGAAAACTGGTCGCTGTTGCAGTACACCATGTCTCA
GCTGCAATGCCTGGCCGACTTTCAGGTTCAACTGCATCAGTTCGAACAGG
ACTTGCACACGCGCATGGTCATGTTGTCCAATAGGCTGACTAAGCCATCC
AACCGAGGCCCCATCACCATATTCCAGACCTGTGACCATGCGGCTCGCAC
CCAGCTATTGAATAGCATAGCTGATTATCAGCAAAAGAAGTCGGAGGCAA
CGGATAGCCTGGGTATCTTTCCGCAGATTTATGCCACGTTAAAGAGTCAC
TTTGCCGATACGCATGACATCACTCTTAATATATTGCTGCAACCGATTGA
AACTCACTTGGCGCACATTCGTCCGCCTGTGCAGGATCACGCTGCGTCGG
GCATTGAAATGCCCTCGTTCAGCTTCGCCCCGCAGGAAAGCATCACCCAA
ATAGGTCAGTATCTACTGACTTTGCCGCAGCACCTGGAGCCGCTGCTGCT
GTCGCCATCTTCTCTGCTGAAACAGGCTCTCGAGGTGTGCAACATCAAGT
ATACGCAGGCCATTCCATGCGCCGACGTCCTGCTCTCGCTGGTCGTAGAG
CAGTGCTGTGTTCTGTACGTTACGCAAATACTGCAAATCAAGTCGTTGCC
TTCCTCGGCGGCTACTCAGCTCAGCGTGGATATCGAGTACCTGTCCAACG
TTCTTGAAGAGTTGGGCTTGTCCATCAACCTTCAGTTGTCTCAGATCCTC
ACGCTGCTAAAGGCTGCTCCAGATCAGTATCTGACCCTCAGCAGCGGATG
CGAGCCGCGACTGGTAACAGCCATTCGGCAAATGCGCAATATTATATCTA
CACAGTAGTTTTCAAATAGTTACATTCAATATCCAAACTTATATGTAATT
TTAAGTATGTATTTATATAAACTATTTTGTTGGCCTACAGAAAAAAAAAA
AAAAAA

RE01016.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cog7-RA 2474 Cog7-RA 79..2418 1..2340 11700 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25752981..25754157 2340..1164 5765 99.3 Minus
chr3R 27901430 chr3R 25754211..25754898 1168..481 3305 98.7 Minus
chr3R 27901430 chr3R 25754953..25755247 483..189 1415 98.6 Minus
chr3R 27901430 chr3R 25755296..25755487 192..1 915 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29930551..29931727 2340..1164 5885 100 Minus
3R 32079331 3R 29931781..29932468 1168..481 3440 100 Minus
3R 32079331 3R 29932523..29932817 483..189 1475 100 Minus
3R 32079331 3R 29932866..29933057 192..1 960 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29671382..29672558 2340..1164 5885 100 Minus
3R 31820162 3R 29672612..29673299 1168..481 3440 100 Minus
3R 31820162 3R 29673354..29673648 483..189 1475 100 Minus
3R 31820162 3R 29673697..29673888 192..1 960 100 Minus
Blast to na_te.dros performed 2019-03-16 11:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 167..213 1919..1873 118 72.3 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9197..9243 1919..1873 118 72.3 Minus

RE01016.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:52:00 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25755300..25755487 1..188 98   Minus
chr3R 25752981..25754154 1167..2340 99 <- Minus
chr3R 25754213..25754896 483..1166 98 <- Minus
chr3R 25754954..25755247 189..482 98 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:45:11 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
Cog7-RA 1..2229 30..2258 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:42 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
Cog7-RA 1..2229 30..2258 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:06:35 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
Cog7-RA 1..2229 30..2258 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:52 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
Cog7-RA 1..2229 30..2258 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:27:54 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
Cog7-RA 1..2229 30..2258 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:53:12 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
Cog7-RA 1..2340 1..2340 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:42 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
Cog7-RA 1..2340 1..2340 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:06:35 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
Cog7-RA 1..2340 1..2340 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:53 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
Cog7-RA 1..2340 1..2340 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:27:54 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
Cog7-RA 1..2340 1..2340 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:00 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29930551..29931724 1167..2340 100 <- Minus
3R 29931783..29932466 483..1166 100 <- Minus
3R 29932524..29932817 189..482 100 <- Minus
3R 29932870..29933057 1..188 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:00 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29930551..29931724 1167..2340 100 <- Minus
3R 29931783..29932466 483..1166 100 <- Minus
3R 29932524..29932817 189..482 100 <- Minus
3R 29932870..29933057 1..188 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:00 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29930551..29931724 1167..2340 100 <- Minus
3R 29931783..29932466 483..1166 100 <- Minus
3R 29932524..29932817 189..482 100 <- Minus
3R 29932870..29933057 1..188 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:06:35 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25756273..25757446 1167..2340 100 <- Minus
arm_3R 25757505..25758188 483..1166 100 <- Minus
arm_3R 25758246..25758539 189..482 100 <- Minus
arm_3R 25758592..25758779 1..188 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:16 Download gff for RE01016.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29671382..29672555 1167..2340 100 <- Minus
3R 29672614..29673297 483..1166 100 <- Minus
3R 29673355..29673648 189..482 100 <- Minus
3R 29673701..29673888 1..188 100   Minus

RE01016.hyp Sequence

Translation from 2 to 2257

> RE01016.hyp
TAWINAINTMDVSALSETTFSPAEWINANYKKFVEENGRDDSEAASAFIR
SYVAKLQLYIFNVNNAVEESSRQVVASMPRIAKESAALQADVHRLQEKMS
AMRLEVAAVQSETGECMATLERLNTKSQKLQVAKESLQESDGWGNLLAEL
EDGFERNDLKGVCDKLIALQKSLHAQEQLPGHAERQTQVEDFKNRLEALA
SPSVVQCFAEGNTEQAQHFVQIFTSIQRLPQLQQYYRAVQKNFWQQQWKQ
TLELQGTESQPQQQQFLTLYYDQLLEHCQRQVKWCSNLFGENSPQPFLVI
AELLPALQPTRDAHILQLLKTSNERLEMLALFAKVNHSFVLHLNSLLEQS
HITLSEELHRLLGEAIFEYFHKFIQQYPRLEETQLSTQVDRLSSNQATPS
DGVRHLEESTRKLYEWLKEACERCASITSDLALCKLITLLNGIFKRQLES
FGRIQRQIGLSLGSSSYAAQSENWSLLQYTMSQLQCLADFQVQLHQFEQD
LHTRMVMLSNRLTKPSNRGPITIFQTCDHAARTQLLNSIADYQQKKSEAT
DSLGIFPQIYATLKSHFADTHDITLNILLQPIETHLAHIRPPVQDHAASG
IEMPSFSFAPQESITQIGQYLLTLPQHLEPLLLSPSSLLKQALEVCNIKY
TQAIPCADVLLSLVVEQCCVLYVTQILQIKSLPSSAATQLSVDIEYLSNV
LEELGLSINLQLSQILTLLKAAPDQYLTLSSGCEPRLVTAIRQMRNIIST
Q*

RE01016.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cog7-PA 742 CG31040-PA 1..742 10..751 3765 100 Plus

RE01016.pep Sequence

Translation from 29 to 2257

> RE01016.pep
MDVSALSETTFSPAEWINANYKKFVEENGRDDSEAASAFIRSYVAKLQLY
IFNVNNAVEESSRQVVASMPRIAKESAALQADVHRLQEKMSAMRLEVAAV
QSETGECMATLERLNTKSQKLQVAKESLQESDGWGNLLAELEDGFERNDL
KGVCDKLIALQKSLHAQEQLPGHAERQTQVEDFKNRLEALASPSVVQCFA
EGNTEQAQHFVQIFTSIQRLPQLQQYYRAVQKNFWQQQWKQTLELQGTES
QPQQQQFLTLYYDQLLEHCQRQVKWCSNLFGENSPQPFLVIAELLPALQP
TRDAHILQLLKTSNERLEMLALFAKVNHSFVLHLNSLLEQSHITLSEELH
RLLGEAIFEYFHKFIQQYPRLEETQLSTQVDRLSSNQATPSDGVRHLEES
TRKLYEWLKEACERCASITSDLALCKLITLLNGIFKRQLESFGRIQRQIG
LSLGSSSYAAQSENWSLLQYTMSQLQCLADFQVQLHQFEQDLHTRMVMLS
NRLTKPSNRGPITIFQTCDHAARTQLLNSIADYQQKKSEATDSLGIFPQI
YATLKSHFADTHDITLNILLQPIETHLAHIRPPVQDHAASGIEMPSFSFA
PQESITQIGQYLLTLPQHLEPLLLSPSSLLKQALEVCNIKYTQAIPCADV
LLSLVVEQCCVLYVTQILQIKSLPSSAATQLSVDIEYLSNVLEELGLSIN
LQLSQILTLLKAAPDQYLTLSSGCEPRLVTAIRQMRNIISTQ*

RE01016.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:19:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16218-PA 742 GF16218-PA 1..742 1..742 3634 93.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11984-PA 742 GG11984-PA 1..742 1..742 3846 97.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22206-PA 766 GH22206-PA 1..766 1..742 2979 77.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:18
Subject Length Description Subject Range Query Range Score Percent Strand
Cog7-PA 742 CG31040-PA 1..742 1..742 3765 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21972-PA 754 GI21972-PA 1..754 1..742 2977 78.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13495-PA 742 GL13495-PA 1..742 1..742 3389 88 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15960-PA 742 GA15960-PA 1..742 1..742 3389 88 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12202-PA 652 GM12202-PA 290..652 380..742 1901 98.9 Plus
Dsec\GM12202-PA 652 GM12202-PA 1..290 1..290 1546 99.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:19:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17535-PA 742 GD17535-PA 1..742 1..742 3904 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14333-PA 751 GJ14333-PA 1..751 1..742 3038 78.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:19:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14089-PA 736 GK14089-PA 1..736 1..742 3008 79.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10410-PA 742 GE10410-PA 1..742 1..742 3876 98.4 Plus