BDGP Sequence Production Resources |
Search the DGRC for RE01016
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 10 |
Well: | 16 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Cog7-RA |
Protein status: | RE01016.pep: gold |
Sequenced Size: | 2356 |
Gene | Date | Evidence |
---|---|---|
CG31040 | 2001-11-29 | Blastp of sequenced clone |
CG7880 | 2002-01-01 | Sim4 clustering to Release 2 |
CG31040 | 2003-01-01 | Sim4 clustering to Release 3 |
Cog7 | 2008-04-29 | Release 5.5 accounting |
Cog7 | 2008-08-15 | Release 5.9 accounting |
Cog7 | 2008-12-18 | 5.12 accounting |
2356 bp (2356 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069758
> RE01016.complete ATACTGCTTGGATCAACGCCATCAACACCATGGATGTTTCGGCTCTTTCG GAGACAACTTTTAGTCCTGCGGAATGGATAAACGCAAACTACAAGAAGTT TGTGGAGGAGAATGGTCGCGATGATAGCGAGGCTGCCTCCGCCTTCATCA GGAGTTACGTGGCCAAGTTGCAGCTGTATATATTCAACGTAAACAATGCT GTGGAGGAGTCAAGTCGCCAAGTGGTGGCCAGCATGCCAAGGATCGCTAA GGAATCCGCAGCGCTGCAGGCAGATGTACACCGGCTGCAAGAGAAGATGA GTGCCATGCGATTGGAGGTAGCTGCAGTGCAAAGCGAAACCGGCGAATGC ATGGCCACCTTGGAGCGCTTGAACACCAAAAGCCAAAAGCTCCAAGTGGC CAAGGAATCGCTACAGGAGTCTGATGGCTGGGGAAACCTACTAGCTGAAC TAGAGGATGGATTTGAACGCAATGATCTAAAGGGAGTCTGTGATAAGCTA ATAGCCCTGCAAAAGTCCCTGCACGCCCAGGAACAGCTGCCAGGCCACGC TGAGCGACAGACCCAAGTGGAGGACTTCAAAAACCGCTTGGAGGCGCTTG CCTCCCCCAGCGTGGTACAGTGCTTTGCTGAAGGCAATACGGAGCAAGCC CAGCACTTCGTTCAGATCTTCACCAGCATTCAGCGGCTGCCACAGCTGCA GCAGTATTACCGAGCTGTGCAAAAAAATTTTTGGCAGCAGCAATGGAAGC AAACTCTGGAGTTGCAGGGCACGGAGTCCCAGCCTCAGCAGCAGCAGTTT CTTACCCTTTACTACGATCAGCTGCTCGAGCACTGCCAGCGCCAGGTCAA GTGGTGCTCCAACCTTTTCGGCGAGAACTCCCCGCAGCCCTTCCTGGTTA TTGCCGAACTATTGCCGGCATTGCAACCCACACGGGATGCCCATATTTTG CAGCTTTTGAAGACCTCCAATGAAAGATTAGAGATGCTGGCCTTGTTCGC CAAGGTTAATCACAGTTTTGTGCTGCACTTAAACTCCCTTCTTGAGCAAT CGCACATAACCTTGTCCGAGGAATTGCATCGCCTGCTCGGTGAGGCGATT TTCGAGTATTTCCACAAGTTTATCCAACAGTACCCGCGCCTGGAGGAGAC CCAACTATCCACACAGGTGGATCGCCTTTCCTCCAACCAAGCCACTCCCA GCGATGGTGTGCGACATCTAGAGGAGAGTACCCGGAAGCTCTACGAGTGG CTGAAAGAGGCCTGCGAACGTTGTGCCTCTATTACGAGTGATTTGGCTCT TTGCAAACTTATCACCTTGCTAAACGGCATATTCAAGCGGCAGCTGGAGA GCTTTGGGCGCATCCAACGTCAGATTGGACTCAGCCTGGGATCCAGCAGC TATGCGGCTCAGAGTGAAAACTGGTCGCTGTTGCAGTACACCATGTCTCA GCTGCAATGCCTGGCCGACTTTCAGGTTCAACTGCATCAGTTCGAACAGG ACTTGCACACGCGCATGGTCATGTTGTCCAATAGGCTGACTAAGCCATCC AACCGAGGCCCCATCACCATATTCCAGACCTGTGACCATGCGGCTCGCAC CCAGCTATTGAATAGCATAGCTGATTATCAGCAAAAGAAGTCGGAGGCAA CGGATAGCCTGGGTATCTTTCCGCAGATTTATGCCACGTTAAAGAGTCAC TTTGCCGATACGCATGACATCACTCTTAATATATTGCTGCAACCGATTGA AACTCACTTGGCGCACATTCGTCCGCCTGTGCAGGATCACGCTGCGTCGG GCATTGAAATGCCCTCGTTCAGCTTCGCCCCGCAGGAAAGCATCACCCAA ATAGGTCAGTATCTACTGACTTTGCCGCAGCACCTGGAGCCGCTGCTGCT GTCGCCATCTTCTCTGCTGAAACAGGCTCTCGAGGTGTGCAACATCAAGT ATACGCAGGCCATTCCATGCGCCGACGTCCTGCTCTCGCTGGTCGTAGAG CAGTGCTGTGTTCTGTACGTTACGCAAATACTGCAAATCAAGTCGTTGCC TTCCTCGGCGGCTACTCAGCTCAGCGTGGATATCGAGTACCTGTCCAACG TTCTTGAAGAGTTGGGCTTGTCCATCAACCTTCAGTTGTCTCAGATCCTC ACGCTGCTAAAGGCTGCTCCAGATCAGTATCTGACCCTCAGCAGCGGATG CGAGCCGCGACTGGTAACAGCCATTCGGCAAATGCGCAATATTATATCTA CACAGTAGTTTTCAAATAGTTACATTCAATATCCAAACTTATATGTAATT TTAAGTATGTATTTATATAAACTATTTTGTTGGCCTACAGAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cog7-RA | 2474 | Cog7-RA | 79..2418 | 1..2340 | 11700 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 25752981..25754157 | 2340..1164 | 5765 | 99.3 | Minus |
chr3R | 27901430 | chr3R | 25754211..25754898 | 1168..481 | 3305 | 98.7 | Minus |
chr3R | 27901430 | chr3R | 25754953..25755247 | 483..189 | 1415 | 98.6 | Minus |
chr3R | 27901430 | chr3R | 25755296..25755487 | 192..1 | 915 | 98.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 29930551..29931727 | 2340..1164 | 5885 | 100 | Minus |
3R | 32079331 | 3R | 29931781..29932468 | 1168..481 | 3440 | 100 | Minus |
3R | 32079331 | 3R | 29932523..29932817 | 483..189 | 1475 | 100 | Minus |
3R | 32079331 | 3R | 29932866..29933057 | 192..1 | 960 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 29671382..29672558 | 2340..1164 | 5885 | 100 | Minus |
3R | 31820162 | 3R | 29672612..29673299 | 1168..481 | 3440 | 100 | Minus |
3R | 31820162 | 3R | 29673354..29673648 | 483..189 | 1475 | 100 | Minus |
3R | 31820162 | 3R | 29673697..29673888 | 192..1 | 960 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 167..213 | 1919..1873 | 118 | 72.3 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9197..9243 | 1919..1873 | 118 | 72.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25755300..25755487 | 1..188 | 98 | Minus | |
chr3R | 25752981..25754154 | 1167..2340 | 99 | <- | Minus |
chr3R | 25754213..25754896 | 483..1166 | 98 | <- | Minus |
chr3R | 25754954..25755247 | 189..482 | 98 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog7-RA | 1..2229 | 30..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog7-RA | 1..2229 | 30..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog7-RA | 1..2229 | 30..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog7-RA | 1..2229 | 30..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog7-RA | 1..2229 | 30..2258 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog7-RA | 1..2340 | 1..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog7-RA | 1..2340 | 1..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog7-RA | 1..2340 | 1..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog7-RA | 1..2340 | 1..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Cog7-RA | 1..2340 | 1..2340 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29930551..29931724 | 1167..2340 | 100 | <- | Minus |
3R | 29931783..29932466 | 483..1166 | 100 | <- | Minus |
3R | 29932524..29932817 | 189..482 | 100 | <- | Minus |
3R | 29932870..29933057 | 1..188 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29930551..29931724 | 1167..2340 | 100 | <- | Minus |
3R | 29931783..29932466 | 483..1166 | 100 | <- | Minus |
3R | 29932524..29932817 | 189..482 | 100 | <- | Minus |
3R | 29932870..29933057 | 1..188 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29930551..29931724 | 1167..2340 | 100 | <- | Minus |
3R | 29931783..29932466 | 483..1166 | 100 | <- | Minus |
3R | 29932524..29932817 | 189..482 | 100 | <- | Minus |
3R | 29932870..29933057 | 1..188 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25756273..25757446 | 1167..2340 | 100 | <- | Minus |
arm_3R | 25757505..25758188 | 483..1166 | 100 | <- | Minus |
arm_3R | 25758246..25758539 | 189..482 | 100 | <- | Minus |
arm_3R | 25758592..25758779 | 1..188 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29671382..29672555 | 1167..2340 | 100 | <- | Minus |
3R | 29672614..29673297 | 483..1166 | 100 | <- | Minus |
3R | 29673355..29673648 | 189..482 | 100 | <- | Minus |
3R | 29673701..29673888 | 1..188 | 100 | Minus |
Translation from 2 to 2257
> RE01016.hyp TAWINAINTMDVSALSETTFSPAEWINANYKKFVEENGRDDSEAASAFIR SYVAKLQLYIFNVNNAVEESSRQVVASMPRIAKESAALQADVHRLQEKMS AMRLEVAAVQSETGECMATLERLNTKSQKLQVAKESLQESDGWGNLLAEL EDGFERNDLKGVCDKLIALQKSLHAQEQLPGHAERQTQVEDFKNRLEALA SPSVVQCFAEGNTEQAQHFVQIFTSIQRLPQLQQYYRAVQKNFWQQQWKQ TLELQGTESQPQQQQFLTLYYDQLLEHCQRQVKWCSNLFGENSPQPFLVI AELLPALQPTRDAHILQLLKTSNERLEMLALFAKVNHSFVLHLNSLLEQS HITLSEELHRLLGEAIFEYFHKFIQQYPRLEETQLSTQVDRLSSNQATPS DGVRHLEESTRKLYEWLKEACERCASITSDLALCKLITLLNGIFKRQLES FGRIQRQIGLSLGSSSYAAQSENWSLLQYTMSQLQCLADFQVQLHQFEQD LHTRMVMLSNRLTKPSNRGPITIFQTCDHAARTQLLNSIADYQQKKSEAT DSLGIFPQIYATLKSHFADTHDITLNILLQPIETHLAHIRPPVQDHAASG IEMPSFSFAPQESITQIGQYLLTLPQHLEPLLLSPSSLLKQALEVCNIKY TQAIPCADVLLSLVVEQCCVLYVTQILQIKSLPSSAATQLSVDIEYLSNV LEELGLSINLQLSQILTLLKAAPDQYLTLSSGCEPRLVTAIRQMRNIIST Q*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cog7-PA | 742 | CG31040-PA | 1..742 | 10..751 | 3765 | 100 | Plus |
Translation from 29 to 2257
> RE01016.pep MDVSALSETTFSPAEWINANYKKFVEENGRDDSEAASAFIRSYVAKLQLY IFNVNNAVEESSRQVVASMPRIAKESAALQADVHRLQEKMSAMRLEVAAV QSETGECMATLERLNTKSQKLQVAKESLQESDGWGNLLAELEDGFERNDL KGVCDKLIALQKSLHAQEQLPGHAERQTQVEDFKNRLEALASPSVVQCFA EGNTEQAQHFVQIFTSIQRLPQLQQYYRAVQKNFWQQQWKQTLELQGTES QPQQQQFLTLYYDQLLEHCQRQVKWCSNLFGENSPQPFLVIAELLPALQP TRDAHILQLLKTSNERLEMLALFAKVNHSFVLHLNSLLEQSHITLSEELH RLLGEAIFEYFHKFIQQYPRLEETQLSTQVDRLSSNQATPSDGVRHLEES TRKLYEWLKEACERCASITSDLALCKLITLLNGIFKRQLESFGRIQRQIG LSLGSSSYAAQSENWSLLQYTMSQLQCLADFQVQLHQFEQDLHTRMVMLS NRLTKPSNRGPITIFQTCDHAARTQLLNSIADYQQKKSEATDSLGIFPQI YATLKSHFADTHDITLNILLQPIETHLAHIRPPVQDHAASGIEMPSFSFA PQESITQIGQYLLTLPQHLEPLLLSPSSLLKQALEVCNIKYTQAIPCADV LLSLVVEQCCVLYVTQILQIKSLPSSAATQLSVDIEYLSNVLEELGLSIN LQLSQILTLLKAAPDQYLTLSSGCEPRLVTAIRQMRNIISTQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16218-PA | 742 | GF16218-PA | 1..742 | 1..742 | 3634 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11984-PA | 742 | GG11984-PA | 1..742 | 1..742 | 3846 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22206-PA | 766 | GH22206-PA | 1..766 | 1..742 | 2979 | 77.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Cog7-PA | 742 | CG31040-PA | 1..742 | 1..742 | 3765 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21972-PA | 754 | GI21972-PA | 1..754 | 1..742 | 2977 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13495-PA | 742 | GL13495-PA | 1..742 | 1..742 | 3389 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15960-PA | 742 | GA15960-PA | 1..742 | 1..742 | 3389 | 88 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12202-PA | 652 | GM12202-PA | 290..652 | 380..742 | 1901 | 98.9 | Plus |
Dsec\GM12202-PA | 652 | GM12202-PA | 1..290 | 1..290 | 1546 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17535-PA | 742 | GD17535-PA | 1..742 | 1..742 | 3904 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14333-PA | 751 | GJ14333-PA | 1..751 | 1..742 | 3038 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14089-PA | 736 | GK14089-PA | 1..736 | 1..742 | 3008 | 79.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10410-PA | 742 | GE10410-PA | 1..742 | 1..742 | 3876 | 98.4 | Plus |