Clone RE01022 Report

Search the DGRC for RE01022

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:10
Well:22
Vector:pFlc-1
Associated Gene/Transcriptnemy-RA
Protein status:RE01022.pep: gold
Sequenced Size:2008

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8776 2002-12-10 Blastp of sequenced clone
CG8776 2003-01-01 Sim4 clustering to Release 3
CG8776 2008-04-29 Release 5.5 accounting
CG8776 2008-08-15 Release 5.9 accounting
CG8776 2008-12-18 5.12 accounting

Clone Sequence Records

RE01022.complete Sequence

2008 bp (2008 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003222

> RE01022.complete
AGTTCGTTCGCAGCATTCGTGGAGTTCGGACGTGAATGTGTTATTGACTC
ACAGCGTTTGTGTTCCGTGCCGGTTTGTTTGCGGAGTTTCCATCATCCGT
CAGCTCCCTTGCAGGCCGCTTCATCTCCGCCGGAGGAGGGATGCACTCCG
TTCGCGTTCGGGCAGATGAATTAATTGTGGAAAATTGTTAAATTCCAGCT
CGTTGAAGCGGCCGCAAATCCAATTAAGCGCATACACCATTCGCGCGGAG
AGTTTGTGCATAATAGAGTAATTAAGTTTTCATTGAAAAGGGTTTTTGAC
ACCGCACCGTCACACGCCACACGAACTTGGGCCAGTCAGCGGAGCAGAGG
CATCAAAATTGATTGCTTTCACATGGACACGAACTCGGTGAGTCCCCTTC
CGCCGATGGAGGAGGCCATGGACAGGGTCAGCGAGAAGTCGCCCCCGGGA
ACTCCCAATGGCATCGAGATGCCCCCGCCGCCGGATGAAAAGCGCTATGA
GGAGGATCCAGATAATGCCTGGAATTGCTGCTCCTGGTGCGAATACTTGC
TGATCGTCATCCTGTCCACGATCCTGCTGGTGGGCGTGCTGGTGCTAACC
CTCTTCTGGGTGATGTTCTACCGCGATGGCTTCGCCTGGTCGGAGAGTCC
CAAGCAGCAGTTCAATCTGCATCCCATCCTCATGATTGCTGGCTTCGTCA
CGCTCTCCGGATTTTCCATCTTGATCTATCGTCTGTGCCGCTGCGTGAAG
CAAATCTATGTGAAGCTGATCCACATGTTCTTCCACGCCGTGGCCATTCC
GTGCATCGCCCTGGGTTTCATATCCGTCTTCGCTTCCCACGACGCGTTGC
ATAAGGTCAACTTCTATAGCCTCCACTCGTGGCTGGGCTTCGTGACAATG
GGCATGTTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCTTTCTGGTAAT
GCTGTGCTGTGAGAACAAGACCTACAGCTGCCGCTCGGCCATGGTGCCCA
TCCACGCCAGCTTGGGACTGGCCAACTTCTGGCTGGCCATTGCCACATCC
GTCACGGGACTGATCGAGAAGGAGCGCGAAACCGTCAACGAGGCGGGCGT
GAGCAGTGAGAACAAGCTGGTGGAGCACTACATCACCAGTGCCATCGGCG
TGACCCTGATCTTCATTGGCATCATCGTCACCTTCGCGGTGCGGCGTTCC
AATGCGCCCGCCTCGGCGAAGGTCTACGTCACGGAGCGCATTTAGACGGT
CCGTCCGGCTCGTCAGAGTCTCCGCCGCCGGAATTGGTCCACGGCCAGGA
GGGTAAGCGAGTCGCAGCAGGTGTACCCGAGGATTCCGGAACTCGGTGAC
TTGGACTGGACTTGGGGAAACGGACCGGCGGTGTCCTTTCGCCAGGCTTA
GCGCACAGAGACCACGCTTCTGCAACTCTGTCCGAACCCTTTGTAACCTT
TTATATGCCAAATTAAATCCACATCATACACTTAGACTACTCCATATGGC
TATAATCAAAACCTTTGCCCACTTTCAATCTCTCAGTAGGTGTGTAGGAT
TAGGAATCTCAGCAGATGAGCAGAAGACCAAGCAAGCAAATCTAATCAAA
ATTTTGACGTGTTCAGCCGAACTTACTGATGCATCCAGGCACTTGCAAGC
TAGATTAGCCAGTTTTTTGGTACTATAGTAGAATTTTGATATACTCGTAA
GCCCATGTAACTAGTGTATGTATGATCGTACCACGTAACGCATTGAATGT
ACGCACTCGGACTCAAAACTGTCGCATTTGATGTTTTTTTGTAATCGTGC
AAGTATTTGTATTTTCATAATGCGCTAAGCAACCTAAGCTGTAAACCAAT
TTTACAAACAAATAAATACTTTTGCCCTGCCTGAGGGCTCTCATAATAAT
CGCAATTGTTTATGCACTTTTTAAATATTTAAAAAACGGTGAGAACTCGG
AAAATAAACAAATCATATTCCCTTGAAAGGGAAATTAAACTGAAAAAAAA
AAAAAAAA

RE01022.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG8776-RA 2157 CG8776-RA 163..2156 1..1994 9940 99.8 Plus
CG8776.a 1950 CG8776.a 4..1950 1..1950 9665 99.7 Plus
CG8776.c 1988 CG8776.c 486..1988 488..1990 7500 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8546754..8547642 1990..1102 4355 99.3 Minus
chr2R 21145070 chr2R 8557160..8557490 331..1 1640 99.7 Minus
chr2R 21145070 chr2R 8548228..8548451 715..492 1120 100 Minus
chr2R 21145070 chr2R 8547933..8548155 938..716 1115 100 Minus
chr2R 21145070 chr2R 8547712..8547885 1103..930 855 99.4 Minus
chr2R 21145070 chr2R 8555122..8555283 492..331 810 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12659495..12660387 1994..1102 4435 99.8 Minus
2R 25286936 2R 12669887..12670217 331..1 1655 100 Minus
2R 25286936 2R 12660973..12661196 715..492 1120 100 Minus
2R 25286936 2R 12660678..12660900 938..716 1115 100 Minus
2R 25286936 2R 12660457..12660630 1103..930 855 99.4 Minus
2R 25286936 2R 12667834..12667995 492..331 810 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12660694..12661586 1994..1102 4435 99.7 Minus
2R 25260384 2R 12671086..12671416 331..1 1655 100 Minus
2R 25260384 2R 12662172..12662395 715..492 1120 100 Minus
2R 25260384 2R 12661877..12662099 938..716 1115 100 Minus
2R 25260384 2R 12661656..12661829 1103..930 855 99.4 Minus
2R 25260384 2R 12669033..12669194 492..331 810 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:30:18 has no hits.

RE01022.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:31:27 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8546752..8547640 1104..1992 99 <- Minus
chr2R 8547712..8547876 939..1103 100 <- Minus
chr2R 8547933..8548155 716..938 100 <- Minus
chr2R 8548228..8548451 492..715 100 <- Minus
chr2R 8555123..8555282 332..491 100 <- Minus
chr2R 8557160..8557490 1..331 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:11:38 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RA 1..873 373..1245 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:49:41 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 1..873 373..1245 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:28:05 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 1..873 373..1245 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:31:46 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RA 1..873 373..1245 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:36 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 1..873 373..1245 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:11:37 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RA 1..1907 1..1907 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:49:41 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 1..1992 1..1992 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:28:05 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 1..1992 1..1992 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:31:46 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
CG8776-RA 1..1907 1..1907 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:36 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
nemy-RA 3..1994 1..1992 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:31:27 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12659497..12660385 1104..1992 99 <- Minus
2R 12660457..12660621 939..1103 100 <- Minus
2R 12660678..12660900 716..938 100 <- Minus
2R 12660973..12661196 492..715 100 <- Minus
2R 12667835..12667994 332..491 100 <- Minus
2R 12669887..12670217 1..331 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:31:27 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12659497..12660385 1104..1992 99 <- Minus
2R 12660457..12660621 939..1103 100 <- Minus
2R 12660678..12660900 716..938 100 <- Minus
2R 12660973..12661196 492..715 100 <- Minus
2R 12667835..12667994 332..491 100 <- Minus
2R 12669887..12670217 1..331 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:31:27 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12659497..12660385 1104..1992 99 <- Minus
2R 12660457..12660621 939..1103 100 <- Minus
2R 12660678..12660900 716..938 100 <- Minus
2R 12660973..12661196 492..715 100 <- Minus
2R 12667835..12667994 332..491 100 <- Minus
2R 12669887..12670217 1..331 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:28:05 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8548478..8548701 492..715 100 <- Minus
arm_2R 8555340..8555499 332..491 100 <- Minus
arm_2R 8547002..8547890 1104..1992 99 <- Minus
arm_2R 8547962..8548126 939..1103 100 <- Minus
arm_2R 8548183..8548405 716..938 100 <- Minus
arm_2R 8557392..8557722 1..331 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:11:08 Download gff for RE01022.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12662172..12662395 492..715 100 <- Minus
2R 12669034..12669193 332..491 100 <- Minus
2R 12660696..12661584 1104..1992 99 <- Minus
2R 12661656..12661820 939..1103 100 <- Minus
2R 12661877..12662099 716..938 100 <- Minus
2R 12671086..12671416 1..331 100   Minus

RE01022.hyp Sequence

Translation from 372 to 1244

> RE01022.hyp
MDTNSVSPLPPMEEAMDRVSEKSPPGTPNGIEMPPPPDEKRYEEDPDNAW
NCCSWCEYLLIVILSTILLVGVLVLTLFWVMFYRDGFAWSESPKQQFNLH
PILMIAGFVTLSGFSILIYRLCRCVKQIYVKLIHMFFHAVAIPCIALGFI
SVFASHDALHKVNFYSLHSWLGFVTMGMFVLQFVIGFFSFLVMLCCENKT
YSCRSAMVPIHASLGLANFWLAIATSVTGLIEKERETVNEAGVSSENKLV
EHYITSAIGVTLIFIGIIVTFAVRRSNAPASAKVYVTERI*

RE01022.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-PA 290 CG8776-PA 1..290 1..290 1526 100 Plus
nemy-PB 267 CG8776-PB 18..267 41..290 1308 100 Plus
nemy-PG 267 CG8776-PG 18..267 41..290 1308 100 Plus
nemy-PE 267 CG8776-PE 18..267 41..290 1308 100 Plus
nemy-PL 256 CG8776-PL 6..256 39..290 1298 99.2 Plus

RE01022.pep Sequence

Translation from 372 to 1244

> RE01022.pep
MDTNSVSPLPPMEEAMDRVSEKSPPGTPNGIEMPPPPDEKRYEEDPDNAW
NCCSWCEYLLIVILSTILLVGVLVLTLFWVMFYRDGFAWSESPKQQFNLH
PILMIAGFVTLSGFSILIYRLCRCVKQIYVKLIHMFFHAVAIPCIALGFI
SVFASHDALHKVNFYSLHSWLGFVTMGMFVLQFVIGFFSFLVMLCCENKT
YSCRSAMVPIHASLGLANFWLAIATSVTGLIEKERETVNEAGVSSENKLV
EHYITSAIGVTLIFIGIIVTFAVRRSNAPASAKVYVTERI*

RE01022.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11463-PA 290 GF11463-PA 1..290 1..290 1384 93.8 Plus
Dana\GF24874-PA 336 GF24874-PA 57..274 7..233 303 33.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22561-PA 290 GG22561-PA 1..290 1..290 1510 97.2 Plus
Dere\GG14525-PA 254 GG14525-PA 18..228 57..271 270 33.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19961-PA 287 GH19961-PA 1..287 1..290 1368 87.6 Plus
Dgri\GH16482-PA 342 GH16482-PA 108..317 57..271 295 34.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
nemy-PA 290 CG8776-PA 1..290 1..290 1526 100 Plus
nemy-PB 267 CG8776-PB 18..267 41..290 1308 100 Plus
nemy-PG 267 CG8776-PG 18..267 41..290 1308 100 Plus
nemy-PE 267 CG8776-PE 18..267 41..290 1308 100 Plus
nemy-PL 256 CG8776-PL 6..256 39..290 1298 99.2 Plus
nemy-PK 266 CG8776-PK 18..266 41..290 1292 99.6 Plus
nemy-PC 210 CG8776-PC 1..210 81..290 1085 100 Plus
nemy-PM 209 CG8776-PM 1..209 81..290 1069 99.5 Plus
CG1275-PA 340 CG1275-PA 81..314 27..271 290 31.6 Plus
CG1275-PB 340 CG1275-PB 81..314 27..271 290 31.6 Plus
CG1275-PD 243 CG1275-PD 8..217 58..271 281 33.3 Plus
CG1275-PC 254 CG1275-PC 19..228 58..271 281 33.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19919-PA 286 GI19919-PA 1..286 1..290 1305 81.7 Plus
Dmoj\GI12153-PA 336 GI12153-PA 74..277 21..233 300 33.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17735-PA 291 GL17735-PA 1..291 1..290 1384 92.1 Plus
Dper\GL24623-PA 332 GL24623-PA 87..287 24..233 293 34.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21312-PA 291 GA21312-PA 1..291 1..290 1383 92.1 Plus
Dpse\GA21312-PB 267 GA21312-PB 3..267 17..290 1219 88.7 Plus
Dpse\GA21312-PC 210 GA21312-PC 1..210 81..290 1053 94.3 Plus
Dpse\GA11787-PA 349 GA11787-PA 87..287 24..233 294 34.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20344-PA 290 GM20344-PA 1..290 1..290 1533 99.3 Plus
Dsec\GM14130-PA 254 GM14130-PA 18..228 57..271 271 33.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:54:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25823-PA 290 GD25823-PA 1..290 1..290 1533 99.3 Plus
Dsim\GD13402-PA 340 GD13402-PA 81..278 27..233 289 34.4 Plus
Dsim\GD13398-PA 243 GD13398-PA 20..217 64..271 271 35.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15086-PA 287 GJ15086-PA 1..287 1..290 1366 87.2 Plus
Dvir\GJ13433-PA 338 GJ13433-PA 117..313 64..271 303 36.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21609-PA 289 GK21609-PA 1..289 1..290 1151 86 Plus
Dwil\GK12595-PA 355 GK12595-PA 133..295 64..233 263 37.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13431-PA 290 GE13431-PA 1..290 1..290 1510 97.2 Plus
Dyak\GE21717-PA 254 GE21717-PA 18..228 57..271 274 33.2 Plus