BDGP Sequence Production Resources |
Search the DGRC for RE01022
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 10 |
Well: | 22 |
Vector: | pFlc-1 |
Associated Gene/Transcript | nemy-RA |
Protein status: | RE01022.pep: gold |
Sequenced Size: | 2008 |
Gene | Date | Evidence |
---|---|---|
CG8776 | 2002-12-10 | Blastp of sequenced clone |
CG8776 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8776 | 2008-04-29 | Release 5.5 accounting |
CG8776 | 2008-08-15 | Release 5.9 accounting |
CG8776 | 2008-12-18 | 5.12 accounting |
2008 bp (2008 high quality bases) assembled on 2002-12-10
GenBank Submission: BT003222
> RE01022.complete AGTTCGTTCGCAGCATTCGTGGAGTTCGGACGTGAATGTGTTATTGACTC ACAGCGTTTGTGTTCCGTGCCGGTTTGTTTGCGGAGTTTCCATCATCCGT CAGCTCCCTTGCAGGCCGCTTCATCTCCGCCGGAGGAGGGATGCACTCCG TTCGCGTTCGGGCAGATGAATTAATTGTGGAAAATTGTTAAATTCCAGCT CGTTGAAGCGGCCGCAAATCCAATTAAGCGCATACACCATTCGCGCGGAG AGTTTGTGCATAATAGAGTAATTAAGTTTTCATTGAAAAGGGTTTTTGAC ACCGCACCGTCACACGCCACACGAACTTGGGCCAGTCAGCGGAGCAGAGG CATCAAAATTGATTGCTTTCACATGGACACGAACTCGGTGAGTCCCCTTC CGCCGATGGAGGAGGCCATGGACAGGGTCAGCGAGAAGTCGCCCCCGGGA ACTCCCAATGGCATCGAGATGCCCCCGCCGCCGGATGAAAAGCGCTATGA GGAGGATCCAGATAATGCCTGGAATTGCTGCTCCTGGTGCGAATACTTGC TGATCGTCATCCTGTCCACGATCCTGCTGGTGGGCGTGCTGGTGCTAACC CTCTTCTGGGTGATGTTCTACCGCGATGGCTTCGCCTGGTCGGAGAGTCC CAAGCAGCAGTTCAATCTGCATCCCATCCTCATGATTGCTGGCTTCGTCA CGCTCTCCGGATTTTCCATCTTGATCTATCGTCTGTGCCGCTGCGTGAAG CAAATCTATGTGAAGCTGATCCACATGTTCTTCCACGCCGTGGCCATTCC GTGCATCGCCCTGGGTTTCATATCCGTCTTCGCTTCCCACGACGCGTTGC ATAAGGTCAACTTCTATAGCCTCCACTCGTGGCTGGGCTTCGTGACAATG GGCATGTTCGTGCTCCAGTTTGTGATCGGCTTCTTCAGCTTTCTGGTAAT GCTGTGCTGTGAGAACAAGACCTACAGCTGCCGCTCGGCCATGGTGCCCA TCCACGCCAGCTTGGGACTGGCCAACTTCTGGCTGGCCATTGCCACATCC GTCACGGGACTGATCGAGAAGGAGCGCGAAACCGTCAACGAGGCGGGCGT GAGCAGTGAGAACAAGCTGGTGGAGCACTACATCACCAGTGCCATCGGCG TGACCCTGATCTTCATTGGCATCATCGTCACCTTCGCGGTGCGGCGTTCC AATGCGCCCGCCTCGGCGAAGGTCTACGTCACGGAGCGCATTTAGACGGT CCGTCCGGCTCGTCAGAGTCTCCGCCGCCGGAATTGGTCCACGGCCAGGA GGGTAAGCGAGTCGCAGCAGGTGTACCCGAGGATTCCGGAACTCGGTGAC TTGGACTGGACTTGGGGAAACGGACCGGCGGTGTCCTTTCGCCAGGCTTA GCGCACAGAGACCACGCTTCTGCAACTCTGTCCGAACCCTTTGTAACCTT TTATATGCCAAATTAAATCCACATCATACACTTAGACTACTCCATATGGC TATAATCAAAACCTTTGCCCACTTTCAATCTCTCAGTAGGTGTGTAGGAT TAGGAATCTCAGCAGATGAGCAGAAGACCAAGCAAGCAAATCTAATCAAA ATTTTGACGTGTTCAGCCGAACTTACTGATGCATCCAGGCACTTGCAAGC TAGATTAGCCAGTTTTTTGGTACTATAGTAGAATTTTGATATACTCGTAA GCCCATGTAACTAGTGTATGTATGATCGTACCACGTAACGCATTGAATGT ACGCACTCGGACTCAAAACTGTCGCATTTGATGTTTTTTTGTAATCGTGC AAGTATTTGTATTTTCATAATGCGCTAAGCAACCTAAGCTGTAAACCAAT TTTACAAACAAATAAATACTTTTGCCCTGCCTGAGGGCTCTCATAATAAT CGCAATTGTTTATGCACTTTTTAAATATTTAAAAAACGGTGAGAACTCGG AAAATAAACAAATCATATTCCCTTGAAAGGGAAATTAAACTGAAAAAAAA AAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 8546754..8547642 | 1990..1102 | 4355 | 99.3 | Minus |
chr2R | 21145070 | chr2R | 8557160..8557490 | 331..1 | 1640 | 99.7 | Minus |
chr2R | 21145070 | chr2R | 8548228..8548451 | 715..492 | 1120 | 100 | Minus |
chr2R | 21145070 | chr2R | 8547933..8548155 | 938..716 | 1115 | 100 | Minus |
chr2R | 21145070 | chr2R | 8547712..8547885 | 1103..930 | 855 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 8555122..8555283 | 492..331 | 810 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 12659495..12660387 | 1994..1102 | 4435 | 99.8 | Minus |
2R | 25286936 | 2R | 12669887..12670217 | 331..1 | 1655 | 100 | Minus |
2R | 25286936 | 2R | 12660973..12661196 | 715..492 | 1120 | 100 | Minus |
2R | 25286936 | 2R | 12660678..12660900 | 938..716 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 12660457..12660630 | 1103..930 | 855 | 99.4 | Minus |
2R | 25286936 | 2R | 12667834..12667995 | 492..331 | 810 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 12660694..12661586 | 1994..1102 | 4435 | 99.7 | Minus |
2R | 25260384 | 2R | 12671086..12671416 | 331..1 | 1655 | 100 | Minus |
2R | 25260384 | 2R | 12662172..12662395 | 715..492 | 1120 | 100 | Minus |
2R | 25260384 | 2R | 12661877..12662099 | 938..716 | 1115 | 100 | Minus |
2R | 25260384 | 2R | 12661656..12661829 | 1103..930 | 855 | 99.4 | Minus |
2R | 25260384 | 2R | 12669033..12669194 | 492..331 | 810 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 8546752..8547640 | 1104..1992 | 99 | <- | Minus |
chr2R | 8547712..8547876 | 939..1103 | 100 | <- | Minus |
chr2R | 8547933..8548155 | 716..938 | 100 | <- | Minus |
chr2R | 8548228..8548451 | 492..715 | 100 | <- | Minus |
chr2R | 8555123..8555282 | 332..491 | 100 | <- | Minus |
chr2R | 8557160..8557490 | 1..331 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8776-RA | 1..873 | 373..1245 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nemy-RA | 1..873 | 373..1245 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nemy-RA | 1..873 | 373..1245 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8776-RA | 1..873 | 373..1245 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nemy-RA | 1..873 | 373..1245 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8776-RA | 1..1907 | 1..1907 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nemy-RA | 1..1992 | 1..1992 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nemy-RA | 1..1992 | 1..1992 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG8776-RA | 1..1907 | 1..1907 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nemy-RA | 3..1994 | 1..1992 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12659497..12660385 | 1104..1992 | 99 | <- | Minus |
2R | 12660457..12660621 | 939..1103 | 100 | <- | Minus |
2R | 12660678..12660900 | 716..938 | 100 | <- | Minus |
2R | 12660973..12661196 | 492..715 | 100 | <- | Minus |
2R | 12667835..12667994 | 332..491 | 100 | <- | Minus |
2R | 12669887..12670217 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12659497..12660385 | 1104..1992 | 99 | <- | Minus |
2R | 12660457..12660621 | 939..1103 | 100 | <- | Minus |
2R | 12660678..12660900 | 716..938 | 100 | <- | Minus |
2R | 12660973..12661196 | 492..715 | 100 | <- | Minus |
2R | 12667835..12667994 | 332..491 | 100 | <- | Minus |
2R | 12669887..12670217 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12659497..12660385 | 1104..1992 | 99 | <- | Minus |
2R | 12660457..12660621 | 939..1103 | 100 | <- | Minus |
2R | 12660678..12660900 | 716..938 | 100 | <- | Minus |
2R | 12660973..12661196 | 492..715 | 100 | <- | Minus |
2R | 12667835..12667994 | 332..491 | 100 | <- | Minus |
2R | 12669887..12670217 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 8548478..8548701 | 492..715 | 100 | <- | Minus |
arm_2R | 8555340..8555499 | 332..491 | 100 | <- | Minus |
arm_2R | 8547002..8547890 | 1104..1992 | 99 | <- | Minus |
arm_2R | 8547962..8548126 | 939..1103 | 100 | <- | Minus |
arm_2R | 8548183..8548405 | 716..938 | 100 | <- | Minus |
arm_2R | 8557392..8557722 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12662172..12662395 | 492..715 | 100 | <- | Minus |
2R | 12669034..12669193 | 332..491 | 100 | <- | Minus |
2R | 12660696..12661584 | 1104..1992 | 99 | <- | Minus |
2R | 12661656..12661820 | 939..1103 | 100 | <- | Minus |
2R | 12661877..12662099 | 716..938 | 100 | <- | Minus |
2R | 12671086..12671416 | 1..331 | 100 | Minus |
Translation from 372 to 1244
> RE01022.hyp MDTNSVSPLPPMEEAMDRVSEKSPPGTPNGIEMPPPPDEKRYEEDPDNAW NCCSWCEYLLIVILSTILLVGVLVLTLFWVMFYRDGFAWSESPKQQFNLH PILMIAGFVTLSGFSILIYRLCRCVKQIYVKLIHMFFHAVAIPCIALGFI SVFASHDALHKVNFYSLHSWLGFVTMGMFVLQFVIGFFSFLVMLCCENKT YSCRSAMVPIHASLGLANFWLAIATSVTGLIEKERETVNEAGVSSENKLV EHYITSAIGVTLIFIGIIVTFAVRRSNAPASAKVYVTERI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nemy-PA | 290 | CG8776-PA | 1..290 | 1..290 | 1526 | 100 | Plus |
nemy-PB | 267 | CG8776-PB | 18..267 | 41..290 | 1308 | 100 | Plus |
nemy-PG | 267 | CG8776-PG | 18..267 | 41..290 | 1308 | 100 | Plus |
nemy-PE | 267 | CG8776-PE | 18..267 | 41..290 | 1308 | 100 | Plus |
nemy-PL | 256 | CG8776-PL | 6..256 | 39..290 | 1298 | 99.2 | Plus |
Translation from 372 to 1244
> RE01022.pep MDTNSVSPLPPMEEAMDRVSEKSPPGTPNGIEMPPPPDEKRYEEDPDNAW NCCSWCEYLLIVILSTILLVGVLVLTLFWVMFYRDGFAWSESPKQQFNLH PILMIAGFVTLSGFSILIYRLCRCVKQIYVKLIHMFFHAVAIPCIALGFI SVFASHDALHKVNFYSLHSWLGFVTMGMFVLQFVIGFFSFLVMLCCENKT YSCRSAMVPIHASLGLANFWLAIATSVTGLIEKERETVNEAGVSSENKLV EHYITSAIGVTLIFIGIIVTFAVRRSNAPASAKVYVTERI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11463-PA | 290 | GF11463-PA | 1..290 | 1..290 | 1384 | 93.8 | Plus |
Dana\GF24874-PA | 336 | GF24874-PA | 57..274 | 7..233 | 303 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22561-PA | 290 | GG22561-PA | 1..290 | 1..290 | 1510 | 97.2 | Plus |
Dere\GG14525-PA | 254 | GG14525-PA | 18..228 | 57..271 | 270 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19961-PA | 287 | GH19961-PA | 1..287 | 1..290 | 1368 | 87.6 | Plus |
Dgri\GH16482-PA | 342 | GH16482-PA | 108..317 | 57..271 | 295 | 34.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nemy-PA | 290 | CG8776-PA | 1..290 | 1..290 | 1526 | 100 | Plus |
nemy-PB | 267 | CG8776-PB | 18..267 | 41..290 | 1308 | 100 | Plus |
nemy-PG | 267 | CG8776-PG | 18..267 | 41..290 | 1308 | 100 | Plus |
nemy-PE | 267 | CG8776-PE | 18..267 | 41..290 | 1308 | 100 | Plus |
nemy-PL | 256 | CG8776-PL | 6..256 | 39..290 | 1298 | 99.2 | Plus |
nemy-PK | 266 | CG8776-PK | 18..266 | 41..290 | 1292 | 99.6 | Plus |
nemy-PC | 210 | CG8776-PC | 1..210 | 81..290 | 1085 | 100 | Plus |
nemy-PM | 209 | CG8776-PM | 1..209 | 81..290 | 1069 | 99.5 | Plus |
CG1275-PA | 340 | CG1275-PA | 81..314 | 27..271 | 290 | 31.6 | Plus |
CG1275-PB | 340 | CG1275-PB | 81..314 | 27..271 | 290 | 31.6 | Plus |
CG1275-PD | 243 | CG1275-PD | 8..217 | 58..271 | 281 | 33.3 | Plus |
CG1275-PC | 254 | CG1275-PC | 19..228 | 58..271 | 281 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19919-PA | 286 | GI19919-PA | 1..286 | 1..290 | 1305 | 81.7 | Plus |
Dmoj\GI12153-PA | 336 | GI12153-PA | 74..277 | 21..233 | 300 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17735-PA | 291 | GL17735-PA | 1..291 | 1..290 | 1384 | 92.1 | Plus |
Dper\GL24623-PA | 332 | GL24623-PA | 87..287 | 24..233 | 293 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21312-PA | 291 | GA21312-PA | 1..291 | 1..290 | 1383 | 92.1 | Plus |
Dpse\GA21312-PB | 267 | GA21312-PB | 3..267 | 17..290 | 1219 | 88.7 | Plus |
Dpse\GA21312-PC | 210 | GA21312-PC | 1..210 | 81..290 | 1053 | 94.3 | Plus |
Dpse\GA11787-PA | 349 | GA11787-PA | 87..287 | 24..233 | 294 | 34.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20344-PA | 290 | GM20344-PA | 1..290 | 1..290 | 1533 | 99.3 | Plus |
Dsec\GM14130-PA | 254 | GM14130-PA | 18..228 | 57..271 | 271 | 33.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25823-PA | 290 | GD25823-PA | 1..290 | 1..290 | 1533 | 99.3 | Plus |
Dsim\GD13402-PA | 340 | GD13402-PA | 81..278 | 27..233 | 289 | 34.4 | Plus |
Dsim\GD13398-PA | 243 | GD13398-PA | 20..217 | 64..271 | 271 | 35.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15086-PA | 287 | GJ15086-PA | 1..287 | 1..290 | 1366 | 87.2 | Plus |
Dvir\GJ13433-PA | 338 | GJ13433-PA | 117..313 | 64..271 | 303 | 36.7 | Plus |