BDGP Sequence Production Resources |
Search the DGRC for RE01035
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 10 |
Well: | 35 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Rtnl1-RA |
Protein status: | RE01035.pep: gold |
Sequenced Size: | 1432 |
Gene | Date | Evidence |
---|---|---|
Rtnl1-RA | 2009-06-22 | Replacement based on scoring |
1432 bp assembled on 2009-08-10
GenBank Submission: BT099529.1
> RE01035.complete AGTTCTTTTGCTGCGCTCGATTCAGACGGTCGGCCGAATCGTCCCATTCG TGTGCCAGTGGTTGTGTGTGTGCGTGACTAGCCAACTAACTAACTTTATC GCTGTAATTAAGCCTAGACACGCGAAAGTCCAGCCCGCTTTGCATACATT TTGGCGCCAAGCTAACTGTTTTTAAAATACACAAAAAAATGGCAGGCGGC AGCAAACGCTACTCACGCAACAACTCCAATGGCAATTTTCAGCCGCTTCC AGAACGCGGACCAGTGGAATCCCTTATCTACTGGCGCGATGTGAAGAAAT CCGGCATTGTCTTCGGCGCTGGCCTGATCACACTGGCGGCCATCTCCAGC TTCTCGGTGATCAGCGTGTTCGCCTACTTGTCGCTCCTAACCCTCTTCGG CACCGTCGCCTTCAGAATCTACAAATCTGTGACACAGGCCGTGCAAAAGA CAAACGAGGGTCACCCCTTTAAGGATTACCTGGAGCTGGATCTGACGCTG TCGCACGAAAAGGTACAGAACATTGCCGGCGTGGCTGTGGCACATATCAA TGGCTTCATCTCCGAGCTGAGGCGTCTGTTTCTTGTTGAGGATATCATCG ATTCGATCAAGTTCGGCGTCATTCTGTGGGTCTTCACCTACGTGGGTGCC TGGTTCAATGGCATGACTCTGGTCATCTTGGCCTTTGTCTCGCTGTTTAC CTTGCCCAAGGTCTACGAGAACAACAAGCAATCGATCGACACTCACTTGG ATCTGGTGCGCAGCAAATTGACAGAAATCACCGACAAGATCCGAGTGGCC ATCCCCATTGGCAACAAGAAGCCCGAGGCCGCTGCCGAGTCTGAGAAGGA CAAGTAAAGAACCCGCACTAGCAAGAGAAACAACCACAAATAAACATGTT TATTTATTTATTAAGCATTATTTGAATGGTTTTAATATTCATCCAGGCAT TAAATAAATAACAAGTCTAGCAGCAATGTTTACATATTAATTGTATAATT GCAATCAACATCAATCGATAATTGTAAATCAAATTTGAAGAGACCCAAAA CAATTTATCAACCAACAACTCGTAGCAGTTTCAAACATTGTCCAAGTGTC TTTAAGTTTTTAACGAACGAAACATTTAAAAAGCATATATAGTGAGGGAA ATTAAGAAGAAAACGATTATATAGACGCAGCAATGCAAATAAATTTCTTA TGAGTTCCACGCAATTTCCGATTTGAATCAACTATCTTCATTTCGATTTA TTCAGCTTTCTTAGTTTTCATGTGACCCTTTTTAAATTAATTCTTTGCTT TAGTTTTAGTTTTACTATTTTGTTGATTTTTTGTATAAAACAACAAGAAG AACTAAGATTACTCTTAAAAACAAACAAACAAGAAAAAATCAAATAAAAA ATGAAGTAAAAATCCACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 4992748..4993377 | 1417..788 | 3150 | 100 | Minus |
chr2L | 23010047 | chr2L | 4996214..4996477 | 264..1 | 1320 | 100 | Minus |
chr2L | 23010047 | chr2L | 4993886..4994098 | 473..261 | 1065 | 100 | Minus |
chr2L | 23010047 | chr2L | 4993608..4993816 | 681..473 | 1045 | 100 | Minus |
chr2L | 23010047 | chr2L | 4993438..4993545 | 788..681 | 540 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4993646..4994277 | 1419..788 | 3160 | 100 | Minus |
2L | 23513712 | 2L | 4997114..4997377 | 264..1 | 1320 | 100 | Minus |
2L | 23513712 | 2L | 4994786..4994998 | 473..261 | 1065 | 100 | Minus |
2L | 23513712 | 2L | 4994508..4994716 | 681..473 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 4994338..4994445 | 788..681 | 540 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4993646..4994277 | 1419..788 | 3160 | 100 | Minus |
2L | 23513712 | 2L | 4997114..4997377 | 264..1 | 1320 | 100 | Minus |
2L | 23513712 | 2L | 4994786..4994998 | 473..261 | 1065 | 100 | Minus |
2L | 23513712 | 2L | 4994508..4994716 | 681..473 | 1045 | 100 | Minus |
2L | 23513712 | 2L | 4994338..4994445 | 788..681 | 540 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 843..904 | 960..900 | 118 | 67.7 | Minus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 5753..5844 | 1154..1247 | 114 | 62.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4992748..4993377 | 788..1417 | 100 | <- | Minus |
chr2L | 4993439..4993544 | 682..787 | 100 | <- | Minus |
chr2L | 4993608..4993816 | 473..681 | 100 | <- | Minus |
chr2L | 4993887..4994094 | 265..472 | 100 | <- | Minus |
chr2L | 4996214..4996477 | 1..264 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RA | 1..669 | 189..857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RA | 1..669 | 189..857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RA | 1..669 | 189..857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RA | 1..669 | 189..857 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RA | 1..1397 | 21..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RA | 2..1418 | 1..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RA | 5..1421 | 1..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rtnl1-RA | 5..1421 | 1..1417 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4994787..4994994 | 265..472 | 100 | <- | Minus |
2L | 4994508..4994716 | 473..681 | 100 | <- | Minus |
2L | 4993648..4994277 | 788..1417 | 100 | <- | Minus |
2L | 4994339..4994444 | 682..787 | 100 | <- | Minus |
2L | 4997114..4997377 | 1..264 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4994787..4994994 | 265..472 | 100 | <- | Minus |
2L | 4994508..4994716 | 473..681 | 100 | <- | Minus |
2L | 4993648..4994277 | 788..1417 | 100 | <- | Minus |
2L | 4994339..4994444 | 682..787 | 100 | <- | Minus |
2L | 4997114..4997377 | 1..264 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4994787..4994994 | 265..472 | 100 | <- | Minus |
2L | 4994508..4994716 | 473..681 | 100 | <- | Minus |
2L | 4993648..4994277 | 788..1417 | 100 | <- | Minus |
2L | 4994339..4994444 | 682..787 | 100 | <- | Minus |
2L | 4997114..4997377 | 1..264 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 4993648..4994277 | 788..1417 | 100 | <- | Minus |
arm_2L | 4994339..4994444 | 682..787 | 100 | <- | Minus |
arm_2L | 4994508..4994716 | 473..681 | 100 | <- | Minus |
arm_2L | 4994787..4994994 | 265..472 | 100 | <- | Minus |
arm_2L | 4997114..4997377 | 1..264 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4994787..4994994 | 265..472 | 100 | <- | Minus |
2L | 4997114..4997377 | 1..264 | 100 | Minus | |
2L | 4993648..4994277 | 788..1417 | 100 | <- | Minus |
2L | 4994339..4994444 | 682..787 | 100 | <- | Minus |
2L | 4994508..4994716 | 473..681 | 100 | <- | Minus |
Translation from 188 to 856
> RE01035.pep MAGGSKRYSRNNSNGNFQPLPERGPVESLIYWRDVKKSGIVFGAGLITLA AISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAVQKTNEGHPFKDYLEL DLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIIDSIKFGVILWVFT YVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDK IRVAIPIGNKKPEAAAESEKDK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14162-PA | 596 | GF14162-PA | 394..596 | 21..222 | 944 | 90.2 | Plus |
Dana\GF17296-PA | 259 | GF17296-PA | 6..185 | 19..191 | 262 | 33 | Plus |
Dana\GF10829-PA | 294 | GF10829-PA | 20..193 | 11..188 | 234 | 34.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24328-PA | 607 | GG24328-PA | 404..607 | 21..222 | 984 | 94.1 | Plus |
Dere\GG25105-PA | 246 | GG25105-PA | 3..165 | 26..187 | 223 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11424-PA | 234 | GH11424-PA | 24..234 | 12..222 | 919 | 84.4 | Plus |
Dgri\GH17123-PA | 245 | GH17123-PA | 3..161 | 27..184 | 164 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rtnl1-PA | 222 | CG33113-PA | 1..222 | 1..222 | 1121 | 100 | Plus |
Rtnl1-PG | 224 | CG33113-PG | 14..224 | 13..222 | 989 | 95.3 | Plus |
Rtnl1-PD | 224 | CG33113-PD | 14..224 | 13..222 | 989 | 95.3 | Plus |
Rtnl1-PJ | 234 | CG33113-PJ | 26..234 | 14..222 | 989 | 95.7 | Plus |
Rtnl1-PI | 234 | CG33113-PI | 26..234 | 14..222 | 989 | 95.7 | Plus |
Rtnl1-PB | 234 | CG33113-PB | 26..234 | 14..222 | 989 | 95.7 | Plus |
Rtnl1-PE | 234 | CG33113-PE | 26..234 | 14..222 | 989 | 95.7 | Plus |
Rtnl1-PL | 222 | CG33113-PL | 25..222 | 25..222 | 988 | 99.5 | Plus |
Rtnl1-PF | 595 | CG33113-PF | 397..595 | 24..222 | 987 | 99.5 | Plus |
Rtnl1-PH | 607 | CG33113-PH | 402..607 | 17..222 | 987 | 96.6 | Plus |
Rtnl1-PC | 202 | CG33113-PC | 6..202 | 26..222 | 981 | 99.5 | Plus |
Rtnl2-PC | 255 | CG1279-PC | 19..216 | 26..222 | 232 | 31.8 | Plus |
Rtnl2-PB | 255 | CG1279-PB | 19..216 | 26..222 | 232 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14630-PA | 234 | GI14630-PA | 24..234 | 12..222 | 955 | 87.7 | Plus |
Dmoj\GI11728-PA | 258 | GI11728-PA | 13..175 | 27..188 | 263 | 33.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26483-PA | 571 | GL26483-PA | 373..571 | 24..222 | 965 | 93 | Plus |
Dper\GL12168-PA | 319 | GL12168-PA | 10..190 | 16..187 | 219 | 29.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28881-PA | 224 | GA28881-PA | 16..224 | 15..222 | 969 | 89.5 | Plus |
Dpse\GA11813-PB | 321 | GA11813-PB | 10..187 | 16..184 | 220 | 29.2 | Plus |
Dpse\GA11813-PA | 298 | GA11813-PA | 3..164 | 26..184 | 215 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18049-PA | 234 | GM18049-PA | 24..234 | 12..222 | 1014 | 94.3 | Plus |
Dsec\GM10472-PA | 238 | GM10472-PA | 3..205 | 26..222 | 216 | 29.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22669-PA | 234 | GD22669-PA | 24..234 | 12..222 | 1014 | 94.3 | Plus |
Dsim\GD19473-PA | 238 | GD19473-PA | 3..205 | 26..222 | 224 | 30 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17140-PA | 236 | GJ17140-PA | 24..234 | 12..222 | 938 | 85.8 | Plus |
Dvir\GJ11400-PA | 265 | GJ11400-PA | 19..208 | 27..213 | 287 | 33.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24458-PA | 587 | GK24458-PA | 382..585 | 21..222 | 951 | 90.2 | Plus |
Dwil\GK11074-PA | 247 | GK11074-PA | 7..179 | 11..188 | 295 | 35.8 | Plus |
Dwil\GK19145-PA | 159 | GK19145-PA | 9..156 | 16..163 | 137 | 24.3 | Plus |
Translation from 188 to 856
> RE01035.hyp MAGGSKRYSRNNSNGNFQPLPERGPVESLIYWRDVKKSGIVFGAGLITLA AISSFSVISVFAYLSLLTLFGTVAFRIYKSVTQAVQKTNEGHPFKDYLEL DLTLSHEKVQNIAGVAVAHINGFISELRRLFLVEDIIDSIKFGVILWVFT YVGAWFNGMTLVILAFVSLFTLPKVYENNKQSIDTHLDLVRSKLTEITDK IRVAIPIGNKKPEAAAESEKDK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rtnl1-PA | 222 | CG33113-PA | 1..222 | 1..222 | 1121 | 100 | Plus |
Rtnl1-PG | 224 | CG33113-PG | 14..224 | 13..222 | 989 | 95.3 | Plus |
Rtnl1-PD | 224 | CG33113-PD | 14..224 | 13..222 | 989 | 95.3 | Plus |
Rtnl1-PJ | 234 | CG33113-PJ | 26..234 | 14..222 | 989 | 95.7 | Plus |
Rtnl1-PL | 222 | CG33113-PL | 25..222 | 25..222 | 988 | 99.5 | Plus |