Clone RE01048 Report

Search the DGRC for RE01048

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:10
Well:48
Vector:pFlc-1
Associated Gene/TranscriptmRpL48-RA
Protein status:RE01048.pep: gold
Preliminary Size:643
Sequenced Size:804

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17642 2001-11-29 Blastp of sequenced clone
CG17642 2002-01-01 Sim4 clustering to Release 2
CG17642 2003-01-01 Sim4 clustering to Release 3
mRpL48 2008-04-29 Release 5.5 accounting
mRpL48 2008-08-15 Release 5.9 accounting
mRpL48 2008-12-18 5.12 accounting

Clone Sequence Records

RE01048.complete Sequence

804 bp (804 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069759

> RE01048.complete
GGTGGCTGCACGCCATCAGCTGGTGATATAACCTGAATTGGAGAATTAAA
AACAGCAAAATGCTACGCAGGATACTGCCAAGTGTGCGGCTGGCGCTGCA
GGTGCCCAAAGCAACCACAACAGCCGTGAGGAGCACCAGTGGAAGTGTTT
ACGAACCGGATTACCTGGAGTCCCTCAAGCCGAAATTCCCGCAGTACGAG
AGCCTGAATGTGCAGATCAAGGGCTACGACTACCCGCAGCTGGAGAGCTA
CCAGAGGTTTCTGCACGGATTGGCCGAGTACCTGGACTTGGACGTCTCCG
ACTGCTACGCCCTCCCTCCGCAAAAGACCACGGTGCAGCGACTGCGGCCC
AACTCCACGGTCATCGAATCGGAGTACAAGCTGACCACCTACGAGCGCAA
CCTGCAGCTGAACAATGTGGATGCGCCAGTCTATCCGCAGTTCTTGCGCC
TGGCCCAGGCGGCGCTGCCCGAGGGTGTGAGCTTGCAGGTGCAGGAGTAC
ACCGACGACTGCGAGGAGCGGCGCTACGTGCCCGACAAGGAGCTGCTCGA
CCTGAAGGACGAGCTGGAGCGCATGGGCGGACCCACCACCACCAGGAAGA
AGTAGGCGGCGCCTCCGATTTGGCAAACATTTAATGCTTAGCTTTAATGA
GTAACCTGTGTAAAGAGTATAGAGAACCTATGAGTAAAACTTTCCTATTT
AAAGCTTTGCACTAACTGGGACGGCAATAGTTTAGCCGCCGTTTACAGAA
GTTAATATTCTAATACAATTTCACGTGTCTCTTTTAAAGAAAAAAAAAAA
AAAA

RE01048.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-RA 795 mRpL48-RA 11..795 2..786 3925 100 Plus
frtz-RA 3715 frtz-RA 3495..3715 786..566 1105 100 Minus
frtz.b 3546 frtz.b 3379..3546 786..619 840 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1710710..1711327 169..786 3045 99.5 Plus
chr2L 23010047 chr2L 1710459..1710558 71..170 500 100 Plus
chr2L 23010047 chr2L 1710329..1710398 2..71 350 100 Plus
chr3L 24539361 chr3L 20326236..20326296 786..726 290 98.4 Minus
chr3L 24539361 chr3L 20201835..20201894 727..786 285 98.3 Plus
chr3R 27901430 chr3R 893705..893761 730..786 285 100 Plus
chr3R 27901430 chr3R 8968215..8968277 724..786 285 96.8 Plus
chr2L 23010047 chr2L 1801097..1801152 731..786 280 100 Plus
chr2L 23010047 chr2L 1806350..1806405 731..786 280 100 Plus
chr2L 23010047 chr2L 20270589..20270644 731..786 280 100 Plus
chr2L 23010047 chr2L 20280976..20281031 731..786 280 100 Plus
chr3L 24539361 chr3L 20207092..20207147 731..786 280 100 Plus
chr3R 27901430 chr3R 8973475..8973530 731..786 280 100 Plus
chr3R 27901430 chr3R 32058..32113 786..731 280 100 Minus
chr3R 27901430 chr3R 37310..37365 786..731 280 100 Minus
chr3R 27901430 chr3R 898899..898954 731..786 280 100 Plus
chr3R 27901430 chr3R 6062806..6062861 731..786 280 100 Plus
chrX 22417052 chrX 9467772..9467827 786..731 280 100 Minus
chrX 22417052 chrX 13354745..13354800 786..731 280 100 Minus
chrX 22417052 chrX 16387660..16387715 731..786 280 100 Plus
chrU 10048995 chrU 8319390..8319445 731..786 280 100 Plus
chr3LHet 2555433 chr3LHet 566904..566959 731..786 280 100 Plus
chr3LHet 2555433 chr3LHet 572123..572178 731..786 280 100 Plus
chr3R 27901430 chr3R 6057554..6057608 732..786 275 100 Plus
chrX 22417052 chrX 13359998..13360052 786..732 275 100 Minus
chrX 22417052 chrX 16382408..16382462 732..786 275 100 Plus
chrU 10048995 chrU 7927691..7927746 786..731 265 98.2 Minus
chrYHet 347003 chrYHet 154372..154427 731..786 265 98.2 Plus
chrU 10048995 chrU 7388122..7388175 731..784 255 98.1 Plus
chrU 10048995 chrU 9714330..9714383 784..731 255 98.1 Minus
chrU 10048995 chrU 8008881..8008937 786..730 240 94.7 Minus
chr3L 24539361 chr3L 24377008..24377063 731..786 235 94.6 Plus
chr3L 24539361 chr3L 24381860..24381915 731..786 235 94.6 Plus
chrU 10048995 chrU 9658107..9658162 731..786 235 94.6 Plus
chrU 10048995 chrU 9618133..9618188 730..785 235 94.6 Plus
chr2L 23010047 chr2L 22860303..22860360 729..786 230 93.1 Plus
chrU 10048995 chrU 8069909..8069966 786..729 230 93.1 Minus
chr2L 23010047 chr2L 20207788..20207843 786..731 220 92.9 Minus
chrU 10048995 chrU 4275070..4275125 731..786 220 92.9 Plus
chrU 10048995 chrU 5051998..5052053 786..731 220 92.9 Minus
chrU 10048995 chrU 9947523..9947578 731..786 220 92.9 Plus
chr2R 21145070 chr2R 71134..71189 786..731 220 92.9 Minus
chr2R 21145070 chr2R 2357142..2357197 786..731 220 92.9 Minus
chr2R 21145070 chr2R 2367353..2367408 786..731 220 92.9 Minus
chr3LHet 2555433 chr3LHet 1662596..1662651 731..786 205 91.1 Plus
chr3L 24539361 chr3L 23549089..23549144 731..786 190 89.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1710849..1711466 169..786 3090 100 Plus
2L 23513712 2L 1710598..1710697 71..170 500 100 Plus
2L 23513712 2L 1710468..1710537 2..71 350 100 Plus
3L 28110227 3L 20337161..20337221 786..726 290 98.4 Minus
3L 28110227 3L 20212656..20212715 727..786 285 98.3 Plus
3R 32079331 3R 5068035..5068091 730..786 285 100 Plus
3R 32079331 3R 13143081..13143143 724..786 285 96.8 Plus
2L 23513712 2L 1801273..1801328 731..786 280 100 Plus
2L 23513712 2L 1806526..1806581 731..786 280 100 Plus
2L 23513712 2L 20272167..20272222 731..786 280 100 Plus
2L 23513712 2L 20282554..20282609 731..786 280 100 Plus
3L 28110227 3L 20217913..20217968 731..786 280 100 Plus
3L 28110227 3L 25081449..25081504 731..786 280 100 Plus
3L 28110227 3L 25086668..25086723 731..786 280 100 Plus
3R 32079331 3R 4206336..4206391 786..731 280 100 Minus
3R 32079331 3R 4211588..4211643 786..731 280 100 Minus
3R 32079331 3R 5073229..5073284 731..786 280 100 Plus
3R 32079331 3R 10231837..10231892 731..786 280 100 Plus
3R 32079331 3R 10237090..10237145 731..786 280 100 Plus
3R 32079331 3R 13148341..13148396 731..786 280 100 Plus
Ymm 880023 Ymm 547935..547990 731..786 280 100 Plus
X 23542271 X 9576057..9576112 786..731 280 100 Minus
X 23542271 X 13463911..13463966 786..731 280 100 Minus
X 23542271 X 13469164..13469219 786..731 280 100 Minus
X 23542271 X 16492701..16492756 731..786 280 100 Plus
X 23542271 X 16497954..16498009 731..786 280 100 Plus
2R 25286936 2R 3687494..3687551 786..729 275 98.3 Minus
U 3151297 U 1305962..1306017 786..731 265 98.2 Minus
Y 3667352 Y 670299..670354 731..786 265 98.2 Plus
U 3151297 U 2082994..2083047 731..784 255 98.1 Plus
U 3151297 U 2199222..2199275 784..731 255 98.1 Minus
Y 3667352 Y 2405108..2405161 731..784 255 98.1 Plus
2R 25286936 2R 3682179..3682234 786..731 250 96.4 Minus
XYmm 216041 XYmm 169029..169085 786..730 240 94.7 Minus
3L 28110227 3L 24388108..24388163 731..786 235 94.6 Plus
3L 28110227 3L 24392960..24393015 731..786 235 94.6 Plus
U 3151297 U 1869905..1869960 731..786 235 94.6 Plus
U 3151297 U 1871395..1871450 730..785 235 94.6 Plus
2L 23513712 2L 22969055..22969112 729..786 230 93.1 Plus
U 3151297 U 1868213..1868270 786..729 230 93.1 Minus
2L 23513712 2L 20209387..20209442 786..731 220 92.9 Minus
2R 25286936 2R 4183615..4183670 786..731 220 92.9 Minus
2R 25286936 2R 6469973..6470028 786..731 220 92.9 Minus
2R 25286936 2R 6480185..6480240 786..731 220 92.9 Minus
U 3151297 U 1637955..1638010 731..786 220 92.9 Plus
U 3151297 U 1736764..1736819 731..786 220 92.9 Plus
Y 3667352 Y 337588..337643 731..786 220 92.9 Plus
Y 3667352 Y 348822..348877 731..786 220 92.9 Plus
3L 28110227 3L 26315278..26315333 731..786 205 91.1 Plus
Y 3667352 Y 342790..342845 731..786 205 91.1 Plus
3L 28110227 3L 23560175..23560230 731..786 190 89.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1710849..1711466 169..786 3090 100 Plus
2L 23513712 2L 1710598..1710697 71..170 500 100 Plus
2L 23513712 2L 1710468..1710537 2..71 350 100 Plus
3L 28103327 3L 20330261..20330321 786..726 290 98.3 Minus
3L 28103327 3L 20205756..20205815 727..786 285 98.3 Plus
3R 31820162 3R 4808866..4808922 730..786 285 100 Plus
3R 31820162 3R 12883912..12883974 724..786 285 96.8 Plus
2L 23513712 2L 20282554..20282609 731..786 280 100 Plus
2L 23513712 2L 20272167..20272222 731..786 280 100 Plus
2L 23513712 2L 1806526..1806581 731..786 280 100 Plus
2L 23513712 2L 1801273..1801328 731..786 280 100 Plus
3L 28103327 3L 25079768..25079823 731..786 280 100 Plus
3L 28103327 3L 25074549..25074604 731..786 280 100 Plus
3L 28103327 3L 20211013..20211068 731..786 280 100 Plus
3R 31820162 3R 12889172..12889227 731..786 280 100 Plus
3R 31820162 3R 9977921..9977976 731..786 280 100 Plus
3R 31820162 3R 9972668..9972723 731..786 280 100 Plus
3R 31820162 3R 4814060..4814115 731..786 280 100 Plus
3R 31820162 3R 3952419..3952474 786..731 280 100 Minus
3R 31820162 3R 3947167..3947222 786..731 280 100 Minus
X 23527363 X 13477262..13477317 786..731 280 100 Minus
X 23527363 X 13472009..13472064 786..731 280 100 Minus
X 23527363 X 9584155..9584210 786..731 280 100 Minus
X 23527363 X 16506052..16506107 731..786 280 100 Plus
X 23527363 X 16500799..16500854 731..786 280 100 Plus
Unimproved_211000022225910_73_630 557 Unimproved_211000022225910_73_630 91..146 731..786 280 100 Plus
2R 25260384 2R 3688693..3688750 786..729 275 98.2 Minus
Unimproved_211000022219645_181_814 633 Unimproved_211000022219645_181_814 124..180 786..730 270 98.2 Minus
Y 3410481 Y 648113..648168 731..786 265 98.2 Plus
Y 3410481 Y 2504217..2504270 731..784 255 98.1 Plus
2R 25260384 2R 3683378..3683433 786..731 250 96.4 Minus
3L 28103327 3L 24381208..24381263 731..786 235 94.6 Plus
3L 28103327 3L 24386060..24386115 731..786 235 94.6 Plus
2L 23513712 2L 22969055..22969112 729..786 230 93.1 Plus
2L 23513712 2L 20209387..20209442 786..731 220 92.8 Minus
2R 25260384 2R 6481384..6481439 786..731 220 92.8 Minus
2R 25260384 2R 6471172..6471227 786..731 220 92.8 Minus
2R 25260384 2R 4184814..4184869 786..731 220 92.8 Minus
Y 3410481 Y 326636..326691 731..786 220 92.8 Plus
Y 3410481 Y 315402..315457 731..786 220 92.8 Plus
3L 28103327 3L 26308378..26308433 731..786 205 91 Plus
Y 3410481 Y 320604..320659 731..786 205 91 Plus
Unimproved_211000022251065_53_586 533 Unimproved_211000022251065_53_586 148..203 786..731 205 91 Minus
3L 28103327 3L 23553275..23553330 731..786 190 89.2 Plus
Blast to na_te.dros performed 2019-03-15 16:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 212..271 786..727 282 96.7 Minus
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 5464..5519 786..731 280 100 Minus

RE01048.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:17:33 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1710327..1710398 1..71 98 -> Plus
chr2L 1710460..1710558 72..170 100 -> Plus
chr2L 1710712..1711271 171..730 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:45:13 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 1..546 60..605 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:43 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 1..546 60..605 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:58:35 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 1..546 60..605 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:53 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 1..546 60..605 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:32:10 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 1..546 60..605 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:53:13 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 1..787 1..786 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:43 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 1..787 1..786 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:35 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 5..790 1..785 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:54 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 1..787 1..786 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:32:10 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL48-RA 5..790 1..785 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:33 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1710466..1710537 1..71 98 -> Plus
2L 1710599..1710697 72..170 100 -> Plus
2L 1710851..1711466 171..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:33 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1710466..1710537 1..71 98 -> Plus
2L 1710599..1710697 72..170 100 -> Plus
2L 1710851..1711466 171..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:33 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1710466..1710537 1..71 98 -> Plus
2L 1710599..1710697 72..170 100 -> Plus
2L 1710851..1711466 171..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:35 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1710466..1710537 1..71 98 -> Plus
arm_2L 1710599..1710697 72..170 100 -> Plus
arm_2L 1710851..1711466 171..789 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:17 Download gff for RE01048.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1710851..1711466 171..789 99   Plus
2L 1710466..1710537 1..71 98 -> Plus
2L 1710599..1710697 72..170 100 -> Plus

RE01048.hyp Sequence

Translation from 59 to 604

> RE01048.hyp
MLRRILPSVRLALQVPKATTTAVRSTSGSVYEPDYLESLKPKFPQYESLN
VQIKGYDYPQLESYQRFLHGLAEYLDLDVSDCYALPPQKTTVQRLRPNST
VIESEYKLTTYERNLQLNNVDAPVYPQFLRLAQAALPEGVSLQVQEYTDD
CEERRYVPDKELLDLKDELERMGGPTTTRKK*

RE01048.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-PB 181 CG17642-PB 1..181 1..181 934 100 Plus
mRpL48-PA 181 CG17642-PA 1..181 1..181 934 100 Plus

RE01048.pep Sequence

Translation from 59 to 604

> RE01048.pep
MLRRILPSVRLALQVPKATTTAVRSTSGSVYEPDYLESLKPKFPQYESLN
VQIKGYDYPQLESYQRFLHGLAEYLDLDVSDCYALPPQKTTVQRLRPNST
VIESEYKLTTYERNLQLNNVDAPVYPQFLRLAQAALPEGVSLQVQEYTDD
CEERRYVPDKELLDLKDELERMGGPTTTRKK*

RE01048.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20831-PA 181 GF20831-PA 1..181 1..181 841 89 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24803-PA 181 GG24803-PA 1..181 1..181 894 93.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10273-PA 181 GH10273-PA 1..181 1..181 795 84 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL48-PB 181 CG17642-PB 1..181 1..181 934 100 Plus
mRpL48-PA 181 CG17642-PA 1..181 1..181 934 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15702-PA 181 GI15702-PA 1..181 1..181 768 81.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18776-PA 180 GL18776-PA 1..180 1..180 824 85.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14592-PA 180 GA14592-PA 1..180 1..180 828 86.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16828-PA 181 GM16828-PA 1..181 1..181 918 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23111-PA 172 GD23111-PA 1..136 1..130 399 63.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10177-PA 181 GJ10177-PA 1..181 1..181 790 83.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15204-PA 181 GK15204-PA 1..181 1..181 791 83.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17681-PA 181 GE17681-PA 1..181 1..181 911 95.6 Plus