BDGP Sequence Production Resources |
Search the DGRC for RE01054
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 10 |
Well: | 54 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Osi19-RB |
Protein status: | RE01054.pep: gold |
Preliminary Size: | 801 |
Sequenced Size: | 1125 |
Gene | Date | Evidence |
---|---|---|
CG15189 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15189 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15189 | 2004-07-26 | Blastp of sequenced clone |
Osi19 | 2008-04-29 | Release 5.5 accounting |
Osi19 | 2008-08-15 | Release 5.9 accounting |
Osi19 | 2008-12-18 | 5.12 accounting |
1125 bp (1125 high quality bases) assembled on 2004-07-26
GenBank Submission: BT015241
> RE01054.complete ATTAAACGCATTTGTGCCAGCGCAGAGGCCAGTTGTCCGTTGACCAGCGA ACCTCGAATTAAAGAACTCGAACATCAAAATGGCCAAGTTGCTCCTTGTG ATCGTTGGTGTGGCGGCCCTAGTGGCAGCGGGACAGGCGGCCGGTGGCTC CACCGAAAAGATGCAGAGGCTTATCGCCGAGGAGCAAAACAAGTGCGCCA GTGGCCAAGACTCGATGGCCTGCATCAAAGAGCGGGCCATGCGGTTTGTG GACAACGTGATGAGCAAAGACAGCTTCCAGGTTTCCAACCTGGAAGTCCG CTCCAATGGAGAGAAGACCACGCCTATCAACGAAGCTCGTGCCAGCAGTG CCGACGGATTTCTGGACGCCATTGAGAACTATATCCGTGGACACGACGTG AGCATGGACTTGCCCTTGGCCGATGCCAAGGTCACCGTCTCGGCCCGCAA CCTGGTTAACAATCAGCTGAGCCTGAACCTCCAGCTGAACGGCGACGATG GCGATGAGGGCACCGATGTCGAAGCCAGGGGCAAGAAACACCGTCTCCGC AAGCTGGCCATGCCCATCCTGGTGCTCATCCTGCTGAAGGCCATCACAGT GATCCCCATGGCCATTGGCATCCTGAAGATCAAGGCCTTCAACGCCCTGG CCCTGGGCTTCTTCTCCTTCATTGTCTCGGTTGGTTTGGCCATTTTCCAA TTGTGCAAAAAGATTGCTCATGATCACCATCACACCGCCCACATCACCGC CCATGGTCCTTGGGACGGCCGCACCTTTAGCTCCGTTCCTGCCCCCGTTG TCGAGCAGCCCCAGAAGTTGGGGCAAGCCCTGGCTTACCAGGCCTACGCT TAGACCACAAGGATGAACCCCTGAGAGCCCAGAGGAGCAGTTTGGAGCCA GCTAGTGGGCTCAAAAGCACAGAATCATTTGTTAACTGTTAGGAATATTC GGTGACTTTGAGCCACTGTTTCACACTTCCAGTGCTGCCGCCCACTTCAT TAGACTTTAATTATAATATTTATTAACTATTTATTGAAAACAAGACCTTA AGCAAGCAGAGAAGCAAACACCAAAATAAAGTAGACAAATAAATGCCTTG AATATGCCGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Osi19.b | 1475 | Osi19.b | 204..1315 | 1..1112 | 5545 | 99.9 | Plus |
Osi19-RA | 1374 | Osi19-RA | 791..1374 | 529..1112 | 2905 | 99.8 | Plus |
Osi19.a | 1502 | Osi19.a | 759..1342 | 529..1112 | 2905 | 99.8 | Plus |
Osi19-RA | 1374 | Osi19-RA | 236..772 | 1..537 | 2670 | 99.8 | Plus |
Osi19.a | 1502 | Osi19.a | 204..740 | 1..537 | 2670 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 2162474..2162870 | 711..1107 | 1985 | 100 | Plus |
chr3R | 27901430 | chr3R | 2161040..2161321 | 1..282 | 1410 | 100 | Plus |
chr3R | 27901430 | chr3R | 2161596..2161854 | 279..537 | 1280 | 99.6 | Plus |
chr3R | 27901430 | chr3R | 2161955..2162137 | 530..712 | 915 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 6336798..6337199 | 711..1112 | 1995 | 99.8 | Plus |
3R | 32079331 | 3R | 6335364..6335645 | 1..282 | 1410 | 100 | Plus |
3R | 32079331 | 3R | 6335920..6336178 | 279..537 | 1280 | 99.6 | Plus |
3R | 32079331 | 3R | 6336279..6336461 | 530..712 | 915 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 6077629..6078030 | 711..1112 | 1995 | 99.7 | Plus |
3R | 31820162 | 3R | 6076195..6076476 | 1..282 | 1410 | 100 | Plus |
3R | 31820162 | 3R | 6076751..6077009 | 279..537 | 1280 | 99.6 | Plus |
3R | 31820162 | 3R | 6077110..6077292 | 530..712 | 915 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 2161956..2162137 | 531..712 | 100 | -> | Plus |
chr3R | 2161040..2161319 | 1..280 | 100 | -> | Plus |
chr3R | 2161598..2161847 | 281..530 | 100 | -> | Plus |
chr3R | 2162476..2162872 | 713..1109 | 92 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi19-RB | 1..774 | 80..853 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi19-RB | 1..774 | 80..853 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi19-RA | 478..801 | 531..853 | 99 | Plus | |
Osi19-RA | 1..451 | 80..530 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi19-RB | 1..774 | 80..853 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi19-RA | 1..517 | 1..517 | 100 | -> | Plus |
Osi19-RA | 547..1136 | 518..1109 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi19-RB | 1..1109 | 1..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi19-RB | 3..1111 | 1..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi19-RA | 1..517 | 1..517 | 100 | -> | Plus |
Osi19-RA | 547..1136 | 518..1109 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Osi19-RB | 3..1111 | 1..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6336800..6337196 | 713..1109 | 99 | Plus | |
3R | 6335364..6335643 | 1..280 | 100 | -> | Plus |
3R | 6335922..6336171 | 281..530 | 100 | -> | Plus |
3R | 6336280..6336461 | 531..712 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6336800..6337196 | 713..1109 | 99 | Plus | |
3R | 6335364..6335643 | 1..280 | 100 | -> | Plus |
3R | 6335922..6336171 | 281..530 | 100 | -> | Plus |
3R | 6336280..6336461 | 531..712 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6336800..6337196 | 713..1109 | 99 | Plus | |
3R | 6335364..6335643 | 1..280 | 100 | -> | Plus |
3R | 6335922..6336171 | 281..530 | 100 | -> | Plus |
3R | 6336280..6336461 | 531..712 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 2161086..2161365 | 1..280 | 100 | -> | Plus |
arm_3R | 2161644..2161893 | 281..530 | 100 | -> | Plus |
arm_3R | 2162002..2162183 | 531..712 | 100 | -> | Plus |
arm_3R | 2162522..2162918 | 713..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 6077111..6077292 | 531..712 | 100 | -> | Plus |
3R | 6076195..6076474 | 1..280 | 100 | -> | Plus |
3R | 6076753..6077002 | 281..530 | 100 | -> | Plus |
3R | 6077631..6078027 | 713..1109 | 99 | Plus |
Translation from 79 to 852
> RE01054.pep MAKLLLVIVGVAALVAAGQAAGGSTEKMQRLIAEEQNKCASGQDSMACIK ERAMRFVDNVMSKDSFQVSNLEVRSNGEKTTPINEARASSADGFLDAIEN YIRGHDVSMDLPLADAKVTVSARNLVNNQLSLNLQLNGDDGDEGTDVEAR GKKHRLRKLAMPILVLILLKAITVIPMAIGILKIKAFNALALGFFSFIVS VGLAIFQLCKKIAHDHHHTAHITAHGPWDGRTFSSVPAPVVEQPQKLGQA LAYQAYA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16392-PA | 268 | GF16392-PA | 1..268 | 1..257 | 1079 | 86.2 | Plus |
Dana\GF16391-PA | 307 | GF16391-PA | 7..228 | 6..225 | 151 | 24.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13302-PA | 266 | GG13302-PA | 1..266 | 1..257 | 1166 | 92.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14036-PA | 262 | GH14036-PA | 1..261 | 1..256 | 971 | 75.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Osi19-PB | 257 | CG15189-PB | 1..257 | 1..257 | 1288 | 100 | Plus |
Osi19-PA | 266 | CG15189-PA | 1..266 | 1..257 | 1268 | 96.6 | Plus |
Osi7-PA | 288 | CG1153-PA | 29..243 | 17..225 | 199 | 26.5 | Plus |
Osi18-PA | 306 | CG1169-PA | 8..227 | 7..225 | 178 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24409-PA | 262 | GI24409-PA | 1..262 | 1..257 | 953 | 76 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24073-PA | 273 | GL24073-PA | 1..272 | 1..256 | 1011 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13557-PA | 273 | GA13557-PA | 1..272 | 1..256 | 1010 | 80.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10883-PA | 266 | GM10883-PA | 1..265 | 1..256 | 1150 | 92.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19862-PA | 266 | GD19862-PA | 1..265 | 1..256 | 1296 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14268-PA | 266 | GJ14268-PA | 14..266 | 13..257 | 933 | 76.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13052-PA | 266 | GK13052-PA | 21..266 | 22..257 | 956 | 79.4 | Plus |
Dwil\GK13051-PA | 302 | GK13051-PA | 1..208 | 1..210 | 146 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10207-PA | 266 | GE10207-PA | 1..265 | 1..256 | 1117 | 90.6 | Plus |
Translation from 79 to 852
> RE01054.hyp MAKLLLVIVGVAALVAAGQAAGGSTEKMQRLIAEEQNKCASGQDSMACIK ERAMRFVDNVMSKDSFQVSNLEVRSNGEKTTPINEARASSADGFLDAIEN YIRGHDVSMDLPLADAKVTVSARNLVNNQLSLNLQLNGDDGDEGTDVEAR GKKHRLRKLAMPILVLILLKAITVIPMAIGILKIKAFNALALGFFSFIVS VGLAIFQLCKKIAHDHHHTAHITAHGPWDGRTFSSVPAPVVEQPQKLGQA LAYQAYA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Osi19-PB | 257 | CG15189-PB | 1..257 | 1..257 | 1288 | 100 | Plus |
Osi19-PA | 266 | CG15189-PA | 1..266 | 1..257 | 1268 | 96.6 | Plus |
Osi7-PA | 288 | CG1153-PA | 29..243 | 17..225 | 199 | 26.5 | Plus |
Osi18-PA | 306 | CG1169-PA | 8..227 | 7..225 | 178 | 25.2 | Plus |