BDGP Sequence Production Resources |
Search the DGRC for RE01069
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 10 |
Well: | 69 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CHIP-RA |
Protein status: | RE01069.pep: gold |
Preliminary Size: | 1239 |
Sequenced Size: | 1287 |
Gene | Date | Evidence |
---|---|---|
CG5203 | 2001-11-29 | Blastp of sequenced clone |
CG5203 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5203 | 2003-01-01 | Sim4 clustering to Release 3 |
CHIP | 2008-04-29 | Release 5.5 accounting |
CHIP | 2008-08-15 | Release 5.9 accounting |
CHIP | 2008-12-18 | 5.12 accounting |
1287 bp (1287 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069760
> RE01069.complete GGTGAGTCTTGGCAACTCTAGAAACACATCGATTAACGTAGCTGAAAATT GTTTTATGTTTAATTAAATACAGGCGAATAGCTCAAGATCTTTTTGGTGT TATGAGCGTTCAAAAGTCACTACCGTTTCCCACTTAATACTTTGTTAACT GTTAAGTTCGTGCAGCAGTTCCCCAATTCTTGCAGAGGAAACAAATTTAC GAGTGCTTCGGTGTTGTTGGACACACACTCACTTTTCATCGGTGGAAAAT CAAATTTGGGACCAGGCGCAGAAGATTCGTCAGGATGACGACCAAGCACA TCTATTCCACGACCAATTTATCAGATCTGCAATTAAAGGAGCAGGGAAAC TGCTTGTTTGCAGCCCGAAAATATGACGACGCAATAAATTGCTACTCAAA GGCCATCATAAAGAACCCCACAAACGCCACATACTTCACAAACCGAGCCC TCTGCAACCTGAAACTGAAGAGATGGGAACTGTGCTGCCAGGATAGTCGG CGCGCCCTCGACATCGATGGGAATCTGTTGAAGGGTCACTTCTTCCTGGG CCAAGGACTCATGGAAATCGACAACTTTGACGAGGCTATAAAGCACCTTC AACGGGCATACGATCTGTCCAAGGAGCAGAAGCAAAACTTTGGGGATGAT ATTACACTACAGTTGCGACTAGCTCGCAAAAAGCGCTGGAATGTTATGGA GGAGAAGCGAATACAGCAGGAAATCGAGCTGCAAAGCTATTTAAATGGTC TAATAAAAGGGGACATGGAAAGCCGTTTGGCCAATTTAAAGCTGAATGGA AATGTACACGATGAGCAGCTGAAAGACAAGCAACAGGAAATTGAGCAAGA ATGCGATGACCATATTAAGGAACTTAACAATATATTTTCTAAGGTTGACG AACGTCGAAAGAAACGTGAAGTTCCCGATTTTCTATGTGGCAAAATAAGT TTTGAAATATTAACAGACCCTGTGATAACTCCATCTGGAATTACGTATGA ACGAAAAGATATAGAAGAACACTTGCAGCGGGTTGGACATTTCGATCCTG TGACACGCGTTAAGCTCACTCAGGATCAACTAATACCAAATTTTTCAATG AAGGAAGTGGTTGACTCTTTTATTGCCGAGAATGAATGGTCTTTAGATTA TTAAGTTACTTATTAGTTGGCATTGTCATTGTAATTGATTAGATGTTAGA ACCCAGTTCCCATTGTCTAAAAACCAGATAAGTGATAATAAATGTGGATC TGCAATTGAGATTTATATTGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CHIP-RA | 1432 | CHIP-RA | 123..1395 | 2..1274 | 6350 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 10436391..10436796 | 2..407 | 2030 | 100 | Plus |
chr2L | 23010047 | chr2L | 10437715..10438075 | 910..1270 | 1805 | 100 | Plus |
chr2L | 23010047 | chr2L | 10436876..10437074 | 408..606 | 995 | 100 | Plus |
chr2L | 23010047 | chr2L | 10437135..10437277 | 606..748 | 715 | 100 | Plus |
chr2L | 23010047 | chr2L | 10437425..10437532 | 748..855 | 540 | 100 | Plus |
chr2L | 23010047 | chr2L | 10437591..10437647 | 855..911 | 285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10437556..10437961 | 2..407 | 2030 | 100 | Plus |
2L | 23513712 | 2L | 10438880..10439244 | 910..1274 | 1810 | 99.7 | Plus |
2L | 23513712 | 2L | 10438041..10438239 | 408..606 | 995 | 100 | Plus |
2L | 23513712 | 2L | 10438300..10438442 | 606..748 | 715 | 100 | Plus |
2L | 23513712 | 2L | 10438590..10438697 | 748..855 | 540 | 100 | Plus |
2L | 23513712 | 2L | 10438756..10438812 | 855..911 | 285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10437556..10437961 | 2..407 | 2030 | 100 | Plus |
2L | 23513712 | 2L | 10438880..10439244 | 910..1274 | 1810 | 99.7 | Plus |
2L | 23513712 | 2L | 10438041..10438239 | 408..606 | 995 | 100 | Plus |
2L | 23513712 | 2L | 10438300..10438442 | 606..748 | 715 | 100 | Plus |
2L | 23513712 | 2L | 10438590..10438697 | 748..855 | 540 | 100 | Plus |
2L | 23513712 | 2L | 10438756..10438812 | 855..911 | 285 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 10437136..10437277 | 607..748 | 100 | -> | Plus |
chr2L | 10437426..10437531 | 749..854 | 100 | -> | Plus |
chr2L | 10437591..10437647 | 855..911 | 100 | -> | Plus |
chr2L | 10436390..10436796 | 1..407 | 99 | -> | Plus |
chr2L | 10436876..10437074 | 408..606 | 100 | -> | Plus |
chr2L | 10437717..10438075 | 912..1271 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHIP-RA | 1..870 | 285..1154 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHIP-RA | 1..870 | 285..1154 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHIP-RA | 1..870 | 285..1154 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHIP-RA | 1..870 | 285..1154 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHIP-RA | 1..870 | 285..1154 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHIP-RA | 5..1274 | 1..1271 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHIP-RA | 5..1274 | 1..1271 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHIP-RA | 8..1277 | 1..1270 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHIP-RA | 5..1274 | 1..1271 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CHIP-RA | 8..1277 | 1..1270 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10437555..10437961 | 1..407 | 99 | -> | Plus |
2L | 10438041..10438239 | 408..606 | 100 | -> | Plus |
2L | 10438301..10438442 | 607..748 | 100 | -> | Plus |
2L | 10438591..10438696 | 749..854 | 100 | -> | Plus |
2L | 10438756..10438812 | 855..911 | 100 | -> | Plus |
2L | 10438882..10439240 | 912..1271 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10437555..10437961 | 1..407 | 99 | -> | Plus |
2L | 10438041..10438239 | 408..606 | 100 | -> | Plus |
2L | 10438301..10438442 | 607..748 | 100 | -> | Plus |
2L | 10438591..10438696 | 749..854 | 100 | -> | Plus |
2L | 10438756..10438812 | 855..911 | 100 | -> | Plus |
2L | 10438882..10439240 | 912..1271 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10437555..10437961 | 1..407 | 99 | -> | Plus |
2L | 10438041..10438239 | 408..606 | 100 | -> | Plus |
2L | 10438301..10438442 | 607..748 | 100 | -> | Plus |
2L | 10438591..10438696 | 749..854 | 100 | -> | Plus |
2L | 10438756..10438812 | 855..911 | 100 | -> | Plus |
2L | 10438882..10439240 | 912..1271 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 10437555..10437961 | 1..407 | 99 | -> | Plus |
arm_2L | 10438041..10438239 | 408..606 | 100 | -> | Plus |
arm_2L | 10438301..10438442 | 607..748 | 100 | -> | Plus |
arm_2L | 10438591..10438696 | 749..854 | 100 | -> | Plus |
arm_2L | 10438756..10438812 | 855..911 | 100 | -> | Plus |
arm_2L | 10438882..10439240 | 912..1271 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10438756..10438812 | 855..911 | 100 | -> | Plus |
2L | 10438041..10438239 | 408..606 | 100 | -> | Plus |
2L | 10438301..10438442 | 607..748 | 100 | -> | Plus |
2L | 10438591..10438696 | 749..854 | 100 | -> | Plus |
2L | 10437555..10437961 | 1..407 | 99 | -> | Plus |
2L | 10438882..10439240 | 912..1271 | 99 | Plus |
Translation from 284 to 1153
> RE01069.pep MTTKHIYSTTNLSDLQLKEQGNCLFAARKYDDAINCYSKAIIKNPTNATY FTNRALCNLKLKRWELCCQDSRRALDIDGNLLKGHFFLGQGLMEIDNFDE AIKHLQRAYDLSKEQKQNFGDDITLQLRLARKKRWNVMEEKRIQQEIELQ SYLNGLIKGDMESRLANLKLNGNVHDEQLKDKQQEIEQECDDHIKELNNI FSKVDERRKKREVPDFLCGKISFEILTDPVITPSGITYERKDIEEHLQRV GHFDPVTRVKLTQDQLIPNFSMKEVVDSFIAENEWSLDY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15792-PA | 289 | GF15792-PA | 1..289 | 1..289 | 1467 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23640-PA | 289 | GG23640-PA | 1..289 | 1..289 | 1512 | 97.9 | Plus |
Dere\GG22948-PA | 529 | GG22948-PA | 93..179 | 17..103 | 154 | 37.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13304-PA | 289 | GH13304-PA | 1..289 | 1..289 | 1440 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
STUB1-PA | 289 | CG5203-PA | 1..289 | 1..289 | 1519 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18167-PA | 289 | GI18167-PA | 1..289 | 1..289 | 1380 | 92.7 | Plus |
Dmoj\GI14722-PA | 411 | GI14722-PA | 130..225 | 16..111 | 152 | 34.4 | Plus |
Dmoj\GI22745-PA | 515 | GI22745-PA | 46..136 | 16..106 | 148 | 34.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19010-PA | 289 | GL19010-PA | 1..289 | 1..289 | 1446 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18734-PA | 289 | GA18734-PA | 1..289 | 1..289 | 1446 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18427-PA | 289 | GM18427-PA | 1..289 | 1..289 | 1515 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\CHIP-PA | 289 | GD23704-PA | 1..289 | 1..289 | 1522 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14605-PA | 289 | GJ14605-PA | 1..289 | 1..289 | 1437 | 92.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15258-PA | 289 | GK15258-PA | 1..289 | 1..289 | 1454 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\CHIP-PA | 289 | GE18461-PA | 1..289 | 1..289 | 1493 | 97.2 | Plus |
Translation from 284 to 1153
> RE01069.hyp MTTKHIYSTTNLSDLQLKEQGNCLFAARKYDDAINCYSKAIIKNPTNATY FTNRALCNLKLKRWELCCQDSRRALDIDGNLLKGHFFLGQGLMEIDNFDE AIKHLQRAYDLSKEQKQNFGDDITLQLRLARKKRWNVMEEKRIQQEIELQ SYLNGLIKGDMESRLANLKLNGNVHDEQLKDKQQEIEQECDDHIKELNNI FSKVDERRKKREVPDFLCGKISFEILTDPVITPSGITYERKDIEEHLQRV GHFDPVTRVKLTQDQLIPNFSMKEVVDSFIAENEWSLDY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CHIP-PA | 289 | CG5203-PA | 1..289 | 1..289 | 1519 | 100 | Plus |