RE01153.complete Sequence
863 bp (863 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069762
> RE01153.complete
GACAACAAAATGCGCTTCCTATTCGCTCTACTTCTCAGCGTGCTCCTGTG
TCTGCTCCTGGCTCAGGAGGGCAGTAGCAGCACATCTACATCCTCGACGG
CGACCACATCCACCGACTCCTCTGCCACCACTACCACGGCTTCATCCGCC
ACCACCACTACCACCACTGCCTCCTCCGCATCCACCACGACCACTGCCTC
CTCTTCCTCCTCCTCGGCGGAGGCCAGGAGGCGCAGACGTGCTCGCCGTC
GTCGCCTGGCTCGTGAGCGCCGTCGTCGCCAGGAGCGGAGACAGCGCCAG
GAAAAGAGGAGGCGCAGGATGGAGCAGCTGCTGGTGAGGCAGCGTCGCCT
GATCAATCAGCTTCAGGGATAAGTGGGGGCTTGGTCCCTTAAGATAGAAT
CTTCGGCCGTTCAATAGAAATATAAGCGCTGCACCAACTAATCAGATTAT
TAGATTGATCTCTTTCTTTGGAGGTATTTTTGAGAAGGCATGCCTGCAGC
GTTGAGCAAGGTTTCGTTGTGGGCATTAGAGCATTTAAGACGTTTCCACA
GGCATTCCCACGCACATCTACATATTCTATCCGACAAGCGGCGAATCCGC
GCAATTCCAAGGCGGCAGACAATTGGCCCTATCCCTGGAGTTTATTATAC
CAGAGCTTGAGCGCTCGAAAATGCTTTTCTTGCAGCCAAGCTCAGCAGTC
AGCCCGCCTGGAATCAAATCAAATAAAATATTCATTTTGGTCTTTGAACT
GTGCATAAATGTGCTGCTGTTCACGAAGTGATGGAGCCACCCAAGCCCTG
GATACTTAAATCTATTGGATGTGAATAAAAATTACGCTGAATGTGTGCAA
AAAAAAAAAAAAA
RE01153.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:14:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-RA | 856 | CG14454-RA | 1..848 | 2..849 | 4240 | 100 | Plus |
CG32453-RA | 434 | CG32453-RA | 1..370 | 2..371 | 1835 | 99.7 | Plus |
CG14452-RA | 485 | CG14452-RA | 73..276 | 64..267 | 685 | 90.3 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 22680578..22681424 | 848..2 | 4235 | 100 | Minus |
chr3L | 24539361 | chr3L | 22686143..22686512 | 2..371 | 1835 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 22682436..22682639 | 267..64 | 665 | 90.3 | Minus |
chr3L | 24539361 | chr3L | 22684928..22685131 | 64..267 | 665 | 90.3 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22691673..22692520 | 849..2 | 4240 | 100 | Minus |
3L | 28110227 | 3L | 22697239..22697608 | 2..371 | 1835 | 99.7 | Plus |
3L | 28110227 | 3L | 22693532..22693735 | 267..64 | 665 | 90.3 | Minus |
3L | 28110227 | 3L | 22696024..22696227 | 64..267 | 665 | 90.3 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:44:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 22684773..22685620 | 849..2 | 4240 | 100 | Minus |
3L | 28103327 | 3L | 22690339..22690708 | 2..371 | 1835 | 99.7 | Plus |
3L | 28103327 | 3L | 22686632..22686835 | 267..64 | 685 | 90.3 | Minus |
3L | 28103327 | 3L | 22689124..22689327 | 64..267 | 685 | 90.3 | Plus |
Blast to na_te.dros performed on 2019-03-15 22:36:00 has no hits.
RE01153.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:37:24 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 22680578..22681224 | 202..848 | 100 | == | Minus |
chr3L | 22681324..22681424 | 1..102 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:45:28 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 1..363 | 10..372 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:00:55 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 1..363 | 10..372 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:26:30 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 1..363 | 10..372 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:54:18 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 1..363 | 10..372 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:29 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 1..363 | 10..372 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:42:07 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 1..847 | 2..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:00:55 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 1..847 | 2..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:26:30 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 8..855 | 1..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:54:19 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 1..847 | 2..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:29 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14454-RA | 8..855 | 1..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:24 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22691674..22692520 | 1..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:24 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22691674..22692520 | 1..848 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:24 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22691674..22692520 | 1..848 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:26:30 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22684774..22685620 | 1..848 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:26:27 Download gff for
RE01153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22684774..22685620 | 1..848 | 99 | | Minus |
RE01153.hyp Sequence
Translation from 3 to 371
> RE01153.hyp
NKMRFLFALLLSVLLCLLLAQEGSSSTSTSSTATTSTDSSATTTTASSAT
TTTTTASSASTTTTASSSSSSAEARRRRRARRRRLARERRRRQERRQRQE
KRRRRMEQLLVRQRRLINQLQG*
RE01153.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32453-PB | 120 | CG32453-PB | 1..120 | 3..122 | 559 | 100 | Plus |
CG32453-PA | 120 | CG32453-PA | 1..120 | 3..122 | 559 | 100 | Plus |
CG14454-PB | 120 | CG14454-PB | 1..120 | 3..122 | 559 | 100 | Plus |
CG14454-PA | 120 | CG14454-PA | 1..120 | 3..122 | 559 | 100 | Plus |
CG14452-PA | 117 | CG14452-PA | 1..117 | 3..122 | 408 | 74.2 | Plus |
RE01153.pep Sequence
Translation from 9 to 371
> RE01153.pep
MRFLFALLLSVLLCLLLAQEGSSSTSTSSTATTSTDSSATTTTASSATTT
TTTASSASTTTTASSSSSSAEARRRRRARRRRLARERRRRQERRQRQEKR
RRRMEQLLVRQRRLINQLQG*
RE01153.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14454-PB | 120 | CG14454-PB | 1..120 | 1..120 | 559 | 100 | Plus |
CG14454-PA | 120 | CG14454-PA | 1..120 | 1..120 | 559 | 100 | Plus |
CG32453-PB | 120 | CG32453-PB | 1..120 | 1..120 | 559 | 100 | Plus |
CG32453-PA | 120 | CG32453-PA | 1..120 | 1..120 | 559 | 100 | Plus |
CG12546-PA | 117 | CG12546-PA | 1..117 | 1..120 | 408 | 74.2 | Plus |
CG14452-PA | 117 | CG14452-PA | 1..117 | 1..120 | 408 | 74.2 | Plus |
CG14453-PA | 133 | CG14453-PA | 1..133 | 1..120 | 294 | 54.4 | Plus |
CG14265-PB | 119 | CG14265-PB | 1..118 | 1..103 | 205 | 46.6 | Plus |
CG12491-PA | 157 | CG12491-PA | 62..156 | 22..113 | 196 | 48.4 | Plus |
CG34105-PA | 157 | CG34105-PA | 62..156 | 22..113 | 196 | 48.4 | Plus |
CG32188-PA | 105 | CG32188-PA | 1..105 | 1..116 | 189 | 45.8 | Plus |
CG32189-PA | 105 | CG32189-PA | 1..105 | 1..116 | 189 | 45.8 | Plus |
CG32071-PA | 150 | CG32071-PA | 11..127 | 1..113 | 189 | 41.2 | Plus |
CG13560-PB | 181 | CG13560-PB | 93..180 | 21..103 | 184 | 46.6 | Plus |
CG13560-PA | 181 | CG13560-PA | 93..180 | 21..103 | 184 | 46.6 | Plus |
ng3-PB | 146 | CG10788-PB | 8..111 | 7..113 | 179 | 41.8 | Plus |
ng2-PA | 112 | CG14266-PA | 6..112 | 4..106 | 175 | 41.8 | Plus |
CG7377-PA | 94 | CG7377-PA | 8..92 | 7..93 | 173 | 45.1 | Plus |
ng1-PA | 107 | CG10781-PA | 6..104 | 4..100 | 171 | 42.2 | Plus |
CG12522-PA | 137 | CG12522-PA | 1..129 | 1..113 | 171 | 37.2 | Plus |
CG33268-PA | 94 | CG33268-PA | 8..92 | 7..93 | 167 | 44 | Plus |
CG13560-PB | 181 | CG13560-PB | 77..179 | 21..113 | 166 | 41.7 | Plus |
CG13560-PA | 181 | CG13560-PA | 77..179 | 21..113 | 166 | 41.7 | Plus |
CG13560-PB | 181 | CG13560-PB | 67..177 | 21..103 | 164 | 35.1 | Plus |
CG13560-PA | 181 | CG13560-PA | 67..177 | 21..103 | 164 | 35.1 | Plus |
CG15741-PA | 135 | CG15741-PA | 1..132 | 1..113 | 160 | 31.1 | Plus |
CG33267-PB | 94 | CG33267-PB | 8..92 | 7..93 | 156 | 42.2 | Plus |
CG14850-PA | 158 | CG14850-PA | 65..156 | 23..106 | 149 | 41.3 | Plus |
CG32198-PB | 136 | CG32198-PB | 7..111 | 4..102 | 142 | 38.1 | Plus |
CG14237-PB | 121 | CG14237-PB | 10..120 | 8..117 | 140 | 40 | Plus |
CG42815-PA | 101 | CG32186-PA | 1..100 | 1..104 | 138 | 35.2 | Plus |
CG14850-PA | 158 | CG14850-PA | 71..154 | 21..102 | 136 | 40 | Plus |