Clone RE01153 Report

Search the DGRC for RE01153

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:11
Well:53
Vector:pFlc-1
Associated Gene/TranscriptCG14454-RA
Protein status:RE01153.pep: gold
Preliminary Size:383
Sequenced Size:863

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14454 2001-11-29 Blastp of sequenced clone
CG14454 2002-01-01 Sim4 clustering to Release 2
CG14454 2003-01-01 Sim4 clustering to Release 3
CG14454 2008-04-29 Release 5.5 accounting
CG14454 2008-08-15 Release 5.9 accounting
CG14454 2008-12-18 5.12 accounting

Clone Sequence Records

RE01153.complete Sequence

863 bp (863 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069762

> RE01153.complete
GACAACAAAATGCGCTTCCTATTCGCTCTACTTCTCAGCGTGCTCCTGTG
TCTGCTCCTGGCTCAGGAGGGCAGTAGCAGCACATCTACATCCTCGACGG
CGACCACATCCACCGACTCCTCTGCCACCACTACCACGGCTTCATCCGCC
ACCACCACTACCACCACTGCCTCCTCCGCATCCACCACGACCACTGCCTC
CTCTTCCTCCTCCTCGGCGGAGGCCAGGAGGCGCAGACGTGCTCGCCGTC
GTCGCCTGGCTCGTGAGCGCCGTCGTCGCCAGGAGCGGAGACAGCGCCAG
GAAAAGAGGAGGCGCAGGATGGAGCAGCTGCTGGTGAGGCAGCGTCGCCT
GATCAATCAGCTTCAGGGATAAGTGGGGGCTTGGTCCCTTAAGATAGAAT
CTTCGGCCGTTCAATAGAAATATAAGCGCTGCACCAACTAATCAGATTAT
TAGATTGATCTCTTTCTTTGGAGGTATTTTTGAGAAGGCATGCCTGCAGC
GTTGAGCAAGGTTTCGTTGTGGGCATTAGAGCATTTAAGACGTTTCCACA
GGCATTCCCACGCACATCTACATATTCTATCCGACAAGCGGCGAATCCGC
GCAATTCCAAGGCGGCAGACAATTGGCCCTATCCCTGGAGTTTATTATAC
CAGAGCTTGAGCGCTCGAAAATGCTTTTCTTGCAGCCAAGCTCAGCAGTC
AGCCCGCCTGGAATCAAATCAAATAAAATATTCATTTTGGTCTTTGAACT
GTGCATAAATGTGCTGCTGTTCACGAAGTGATGGAGCCACCCAAGCCCTG
GATACTTAAATCTATTGGATGTGAATAAAAATTACGCTGAATGTGTGCAA
AAAAAAAAAAAAA

RE01153.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-RA 856 CG14454-RA 1..848 2..849 4240 100 Plus
CG32453-RA 434 CG32453-RA 1..370 2..371 1835 99.7 Plus
CG14452-RA 485 CG14452-RA 73..276 64..267 685 90.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22680578..22681424 848..2 4235 100 Minus
chr3L 24539361 chr3L 22686143..22686512 2..371 1835 99.7 Plus
chr3L 24539361 chr3L 22682436..22682639 267..64 665 90.3 Minus
chr3L 24539361 chr3L 22684928..22685131 64..267 665 90.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22691673..22692520 849..2 4240 100 Minus
3L 28110227 3L 22697239..22697608 2..371 1835 99.7 Plus
3L 28110227 3L 22693532..22693735 267..64 665 90.3 Minus
3L 28110227 3L 22696024..22696227 64..267 665 90.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22684773..22685620 849..2 4240 100 Minus
3L 28103327 3L 22690339..22690708 2..371 1835 99.7 Plus
3L 28103327 3L 22686632..22686835 267..64 685 90.3 Minus
3L 28103327 3L 22689124..22689327 64..267 685 90.3 Plus
Blast to na_te.dros performed on 2019-03-15 22:36:00 has no hits.

RE01153.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:37:24 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22680578..22681224 202..848 100 == Minus
chr3L 22681324..22681424 1..102 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:45:28 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 1..363 10..372 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:00:55 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 1..363 10..372 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:26:30 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 1..363 10..372 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:54:18 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 1..363 10..372 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:29 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 1..363 10..372 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:42:07 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 1..847 2..848 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:00:55 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 1..847 2..848 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:26:30 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 8..855 1..848 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:54:19 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 1..847 2..848 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:29 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
CG14454-RA 8..855 1..848 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:24 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22691674..22692520 1..848 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:24 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22691674..22692520 1..848 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:37:24 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22691674..22692520 1..848 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:26:30 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22684774..22685620 1..848 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:26:27 Download gff for RE01153.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22684774..22685620 1..848 99   Minus

RE01153.hyp Sequence

Translation from 3 to 371

> RE01153.hyp
NKMRFLFALLLSVLLCLLLAQEGSSSTSTSSTATTSTDSSATTTTASSAT
TTTTTASSASTTTTASSSSSSAEARRRRRARRRRLARERRRRQERRQRQE
KRRRRMEQLLVRQRRLINQLQG*

RE01153.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG32453-PB 120 CG32453-PB 1..120 3..122 559 100 Plus
CG32453-PA 120 CG32453-PA 1..120 3..122 559 100 Plus
CG14454-PB 120 CG14454-PB 1..120 3..122 559 100 Plus
CG14454-PA 120 CG14454-PA 1..120 3..122 559 100 Plus
CG14452-PA 117 CG14452-PA 1..117 3..122 408 74.2 Plus

RE01153.pep Sequence

Translation from 9 to 371

> RE01153.pep
MRFLFALLLSVLLCLLLAQEGSSSTSTSSTATTSTDSSATTTTASSATTT
TTTASSASTTTTASSSSSSAEARRRRRARRRRLARERRRRQERRQRQEKR
RRRMEQLLVRQRRLINQLQG*

RE01153.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14454-PB 120 CG14454-PB 1..120 1..120 559 100 Plus
CG14454-PA 120 CG14454-PA 1..120 1..120 559 100 Plus
CG32453-PB 120 CG32453-PB 1..120 1..120 559 100 Plus
CG32453-PA 120 CG32453-PA 1..120 1..120 559 100 Plus
CG12546-PA 117 CG12546-PA 1..117 1..120 408 74.2 Plus
CG14452-PA 117 CG14452-PA 1..117 1..120 408 74.2 Plus
CG14453-PA 133 CG14453-PA 1..133 1..120 294 54.4 Plus
CG14265-PB 119 CG14265-PB 1..118 1..103 205 46.6 Plus
CG12491-PA 157 CG12491-PA 62..156 22..113 196 48.4 Plus
CG34105-PA 157 CG34105-PA 62..156 22..113 196 48.4 Plus
CG32188-PA 105 CG32188-PA 1..105 1..116 189 45.8 Plus
CG32189-PA 105 CG32189-PA 1..105 1..116 189 45.8 Plus
CG32071-PA 150 CG32071-PA 11..127 1..113 189 41.2 Plus
CG13560-PB 181 CG13560-PB 93..180 21..103 184 46.6 Plus
CG13560-PA 181 CG13560-PA 93..180 21..103 184 46.6 Plus
ng3-PB 146 CG10788-PB 8..111 7..113 179 41.8 Plus
ng2-PA 112 CG14266-PA 6..112 4..106 175 41.8 Plus
CG7377-PA 94 CG7377-PA 8..92 7..93 173 45.1 Plus
ng1-PA 107 CG10781-PA 6..104 4..100 171 42.2 Plus
CG12522-PA 137 CG12522-PA 1..129 1..113 171 37.2 Plus
CG33268-PA 94 CG33268-PA 8..92 7..93 167 44 Plus
CG13560-PB 181 CG13560-PB 77..179 21..113 166 41.7 Plus
CG13560-PA 181 CG13560-PA 77..179 21..113 166 41.7 Plus
CG13560-PB 181 CG13560-PB 67..177 21..103 164 35.1 Plus
CG13560-PA 181 CG13560-PA 67..177 21..103 164 35.1 Plus
CG15741-PA 135 CG15741-PA 1..132 1..113 160 31.1 Plus
CG33267-PB 94 CG33267-PB 8..92 7..93 156 42.2 Plus
CG14850-PA 158 CG14850-PA 65..156 23..106 149 41.3 Plus
CG32198-PB 136 CG32198-PB 7..111 4..102 142 38.1 Plus
CG14237-PB 121 CG14237-PB 10..120 8..117 140 40 Plus
CG42815-PA 101 CG32186-PA 1..100 1..104 138 35.2 Plus
CG14850-PA 158 CG14850-PA 71..154 21..102 136 40 Plus