BDGP Sequence Production Resources |
Search the DGRC for RE01312
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 13 |
Well: | 12 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Tsp42Ef-RA |
Protein status: | RE01312.pep: gold |
Preliminary Size: | 669 |
Sequenced Size: | 1362 |
Gene | Date | Evidence |
---|---|---|
CG12845 | 2001-12-14 | Blastp of sequenced clone |
CG12845 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12845 | 2003-01-01 | Sim4 clustering to Release 3 |
Tsp42Ef | 2008-04-29 | Release 5.5 accounting |
Tsp42Ef | 2008-08-15 | Release 5.9 accounting |
Tsp42Ef | 2008-12-18 | 5.12 accounting |
1362 bp (1362 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070898
> RE01312.complete AGTGGATTTCTAGCCGACGGACAGACCGCACCTGATCCGAGTCATTCGCC CATGAGTCATTCAACTCGCTGCGGGAAAGTGCCTCGCTGATTCCGACAAT TTCCCACCATTGGTGGTGCTACGTTGCACGCTGTTAGATTGAGGAAATTC GACATAGTTGCGACGATCTTCCAGAAAGTATCGATAACGTACAGGGAGCC CAGAGAGAGATAGAGAGATATAGAAACATCGCTGATCTCACTGATCCGAT TCGATCTCAAAGAGAGCGGAGGAGTACGAAAACAAGTTTCGCGCAGCTTG CTCTCTCTTCAGGCGGCTCTCCAGGAATTTCAGGCATCTCGACCCCCAAC GAATCCGAGGAGCATCATCCGCCATGGCGTCCACGTCGAGTGTGAAGCTG ATTGTTTACGCCCTGGACGTACTTTGCACACTGCTAGCCTTGGTGCTGAT ATCCTTCGGCATCTATGTGGCGGTGTCCTACAACCTAAACGAGATCGGTC AGCTGACGGCCTACGGCTACGTGGGACTCGGGGCTGCTGCCCTGCTGGTT GTCCTTTGGGGATACCTGTCCGCCTGGCGCGAGAACGTGTGCTGCACAGT GACGTTCATTATTTTCCTGTGCCTGGTCATCATTGCCCAGTTCGCCGTCG TCTACTTGCTGATCACCCAGGAGAAGACGGTGGCCTCCAACCTGGCTAAT GCCCTGGAGGCCACCTGGGAGGAGGAACTGAACAGCCCTGGTGCCATGTC GCTGTACCAGAACTGGTTCCAGTGCTGCGGTCGTGGAAGTCCCCAGGATT ACATCGTCAACGAACGACTGCCGCCGGAGACATGTTTCCGAAACCACGAC AAGAGCAAGCCGGAGAACCTGATCCACACCGGCTGTCGGGTGGAGTTCGA GAACTACTGGCAACACTTGACCAAGATTTTTAACATCCTGGCCCTCGTAC TCATTGGCTTCGAGCTCCTGCTGAGTGTCATCTCTTGCCGCCTGTGCAAC AGCATTCGCAACGATGCTCGACGTTCTTACTTTTAGACAGTGAAACCTGA AAATACTCAACTGGGATTGGCAGTCGACTTGTTAAATTTCTGAAGAATAT TACACTATTAATTAATTGGCTTGGCAGGTCTTGAGCGTTATTCAAGACTG GGGTATTGCTGTTATATTTTCGAAATTGAAACTCATTTAATCAGCACAGT GCACTGAAATGATCCCTTTTCACACGTTGATTTCAGTGAAATACAGAGGG CAACTCACAACTAAGATTAAGAAAAGTAAAATAGATTTAGTTTTATTTAT TTCAACATACTTTTAAATAAATTTATCGAACCAAAGTCAAGCACCGAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsp42Ef-RA | 1593 | Tsp42Ef-RA | 114..1458 | 1..1345 | 6710 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 2912432..2912861 | 1..430 | 2135 | 99.8 | Plus |
chr2R | 21145070 | chr2R | 2915111..2915493 | 963..1345 | 1915 | 100 | Plus |
chr2R | 21145070 | chr2R | 2914854..2915052 | 766..964 | 995 | 100 | Plus |
chr2R | 21145070 | chr2R | 2914395..2914568 | 431..604 | 870 | 100 | Plus |
chr2R | 21145070 | chr2R | 2914629..2914791 | 604..766 | 815 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7025012..7025441 | 1..430 | 2135 | 99.8 | Plus |
2R | 25286936 | 2R | 7027700..7028082 | 963..1345 | 1915 | 100 | Plus |
2R | 25286936 | 2R | 7027443..7027641 | 766..964 | 995 | 100 | Plus |
2R | 25286936 | 2R | 7026984..7027157 | 431..604 | 870 | 100 | Plus |
2R | 25286936 | 2R | 7027218..7027380 | 604..766 | 815 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7026211..7026640 | 1..430 | 2135 | 99.7 | Plus |
2R | 25260384 | 2R | 7028899..7029281 | 963..1345 | 1915 | 100 | Plus |
2R | 25260384 | 2R | 7028642..7028840 | 766..964 | 995 | 100 | Plus |
2R | 25260384 | 2R | 7028183..7028356 | 431..604 | 870 | 100 | Plus |
2R | 25260384 | 2R | 7028417..7028579 | 604..766 | 815 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dbuz\Galileo | 2304 | Dbuz\Galileo GALILEO 2304bp | 1115..1176 | 1263..1322 | 115 | 69.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 2914630..2914791 | 605..766 | 100 | -> | Plus |
chr2R | 2914855..2915052 | 767..964 | 100 | -> | Plus |
chr2R | 2914395..2914568 | 431..604 | 100 | -> | Plus |
chr2R | 2912432..2912861 | 1..430 | 99 | -> | Plus |
chr2R | 2915113..2915493 | 965..1346 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ef-RA | 1..663 | 374..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ef-RA | 1..663 | 374..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ef-RA | 1..663 | 374..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ef-RA | 1..663 | 374..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ef-RA | 1..663 | 374..1036 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ef-RA | 1..1345 | 1..1345 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ef-RA | 1..1345 | 1..1345 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ef-RA | 3..1347 | 1..1345 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ef-RA | 1..1345 | 1..1345 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp42Ef-RA | 3..1347 | 1..1345 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7025012..7025441 | 1..430 | 99 | -> | Plus |
2R | 7026984..7027157 | 431..604 | 100 | -> | Plus |
2R | 7027219..7027380 | 605..766 | 100 | -> | Plus |
2R | 7027444..7027641 | 767..964 | 100 | -> | Plus |
2R | 7027702..7028082 | 965..1346 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7025012..7025441 | 1..430 | 99 | -> | Plus |
2R | 7026984..7027157 | 431..604 | 100 | -> | Plus |
2R | 7027219..7027380 | 605..766 | 100 | -> | Plus |
2R | 7027444..7027641 | 767..964 | 100 | -> | Plus |
2R | 7027702..7028082 | 965..1346 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7025012..7025441 | 1..430 | 99 | -> | Plus |
2R | 7026984..7027157 | 431..604 | 100 | -> | Plus |
2R | 7027219..7027380 | 605..766 | 100 | -> | Plus |
2R | 7027444..7027641 | 767..964 | 100 | -> | Plus |
2R | 7027702..7028082 | 965..1346 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 2914724..2914885 | 605..766 | 100 | -> | Plus |
arm_2R | 2914949..2915146 | 767..964 | 100 | -> | Plus |
arm_2R | 2912517..2912946 | 1..430 | 99 | -> | Plus |
arm_2R | 2914489..2914662 | 431..604 | 100 | -> | Plus |
arm_2R | 2915207..2915587 | 965..1346 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7026211..7026640 | 1..430 | 99 | -> | Plus |
2R | 7028183..7028356 | 431..604 | 100 | -> | Plus |
2R | 7028418..7028579 | 605..766 | 100 | -> | Plus |
2R | 7028643..7028840 | 767..964 | 100 | -> | Plus |
2R | 7028901..7029281 | 965..1346 | 99 | Plus |
Translation from 373 to 1035
> RE01312.pep MASTSSVKLIVYALDVLCTLLALVLISFGIYVAVSYNLNEIGQLTAYGYV GLGAAALLVVLWGYLSAWRENVCCTVTFIIFLCLVIIAQFAVVYLLITQE KTVASNLANALEATWEEELNSPGAMSLYQNWFQCCGRGSPQDYIVNERLP PETCFRNHDKSKPENLIHTGCRVEFENYWQHLTKIFNILALVLIGFELLL SVISCRLCNSIRNDARRSYF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12683-PA | 220 | GF12683-PA | 1..220 | 1..220 | 946 | 78.2 | Plus |
Dana\GF12685-PA | 229 | GF12685-PA | 4..227 | 3..220 | 253 | 26.8 | Plus |
Dana\GF13154-PA | 226 | GF13154-PA | 6..224 | 5..218 | 253 | 27.7 | Plus |
Dana\GF12682-PA | 227 | GF12682-PA | 4..225 | 3..218 | 236 | 27.7 | Plus |
Dana\GF12686-PA | 228 | GF12686-PA | 4..223 | 3..218 | 236 | 28.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23244-PA | 220 | GG23244-PA | 1..220 | 1..220 | 1058 | 89.1 | Plus |
Dere\GG23246-PA | 231 | GG23246-PA | 4..229 | 6..220 | 253 | 27.9 | Plus |
Dere\GG23247-PA | 229 | GG23247-PA | 4..224 | 3..218 | 250 | 27.8 | Plus |
Dere\GG23240-PA | 226 | GG23240-PA | 6..226 | 5..220 | 239 | 27.9 | Plus |
Dere\GG23245-PA | 217 | GG23245-PA | 4..214 | 3..220 | 195 | 28.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21500-PA | 219 | GH21500-PA | 1..219 | 1..220 | 848 | 70.5 | Plus |
Dgri\GH21494-PA | 226 | GH21494-PA | 6..224 | 5..218 | 254 | 28.2 | Plus |
Dgri\GH21499-PA | 230 | GH21499-PA | 4..230 | 3..220 | 223 | 27.2 | Plus |
Dgri\GH21502-PA | 229 | GH21502-PA | 4..227 | 3..220 | 213 | 26.8 | Plus |
Dgri\GH21512-PA | 218 | GH21512-PA | 4..218 | 3..220 | 203 | 27.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsp42Ef-PA | 220 | CG12845-PA | 1..220 | 1..220 | 1150 | 100 | Plus |
Tsp42Ei-PB | 229 | CG12843-PB | 6..224 | 5..218 | 266 | 29 | Plus |
Tsp42Ei-PA | 229 | CG12843-PA | 6..224 | 5..218 | 266 | 29 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 6..226 | 5..220 | 257 | 27.9 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 6..226 | 5..220 | 257 | 27.9 | Plus |
Tsp42Ea-PA | 226 | CG18817-PA | 6..226 | 5..220 | 257 | 27.9 | Plus |
Tsp42Eh-PB | 231 | CG12844-PB | 4..229 | 3..220 | 252 | 26.5 | Plus |
Tsp42Eg-PA | 218 | CG12142-PA | 4..215 | 3..220 | 240 | 27.8 | Plus |
Tsp42Ee-PB | 228 | CG10106-PB | 5..228 | 4..220 | 225 | 26.5 | Plus |
Tsp42Ee-PA | 228 | CG10106-PA | 5..228 | 4..220 | 225 | 26.5 | Plus |
CG30160-PA | 222 | CG30160-PA | 11..220 | 17..212 | 197 | 27.6 | Plus |
Tsp42Eb-PB | 222 | CG18816-PB | 11..220 | 17..212 | 197 | 27.6 | Plus |
Tsp42Ed-PB | 227 | CG12846-PB | 8..227 | 7..220 | 192 | 22 | Plus |
Tsp42Ed-PA | 227 | CG12846-PA | 8..227 | 7..220 | 192 | 22 | Plus |
Tsp42Ek-PB | 215 | CG12841-PB | 4..212 | 3..217 | 189 | 25.9 | Plus |
Tsp42Ek-PA | 215 | CG12841-PA | 4..212 | 3..217 | 189 | 25.9 | Plus |
Tsp42El-PA | 217 | CG12840-PA | 4..214 | 3..217 | 186 | 23.4 | Plus |
lbm-PB | 208 | CG2374-PB | 4..208 | 3..220 | 182 | 27.9 | Plus |
lbm-PA | 208 | CG2374-PA | 4..208 | 3..220 | 182 | 27.9 | Plus |
Tsp42Eq-PA | 219 | CG12832-PA | 5..218 | 4..220 | 178 | 21.2 | Plus |
Tsp42Er-PA | 211 | CG12837-PA | 8..211 | 7..220 | 158 | 21.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19470-PA | 220 | GI19470-PA | 1..220 | 1..220 | 828 | 73.2 | Plus |
Dmoj\GI19464-PA | 226 | GI19464-PA | 6..224 | 5..218 | 255 | 28.2 | Plus |
Dmoj\GI19472-PA | 227 | GI19472-PA | 4..225 | 3..220 | 244 | 26.9 | Plus |
Dmoj\GI19473-PA | 226 | GI19473-PA | 4..221 | 3..218 | 215 | 27.5 | Plus |
Dmoj\GI19477-PA | 208 | GI19477-PA | 4..208 | 3..220 | 214 | 30.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11139-PA | 220 | GL11139-PA | 1..220 | 1..220 | 921 | 77.3 | Plus |
Dper\GL11133-PA | 226 | GL11133-PA | 6..224 | 5..218 | 261 | 28.2 | Plus |
Dper\GL11142-PA | 228 | GL11142-PA | 4..223 | 3..218 | 246 | 27.9 | Plus |
Dper\GL11138-PA | 252 | GL11138-PA | 83..252 | 50..220 | 242 | 31.6 | Plus |
Dper\GL11147-PA | 208 | GL11147-PA | 4..208 | 3..220 | 196 | 28.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11850-PA | 220 | GA11850-PA | 1..220 | 1..220 | 921 | 77.3 | Plus |
Dpse\GA15095-PA | 226 | GA15095-PA | 6..224 | 5..218 | 261 | 28.2 | Plus |
Dpse\GA10076-PA | 228 | GA10076-PA | 4..228 | 3..220 | 256 | 28.8 | Plus |
Dpse\GA24622-PA | 228 | GA24622-PA | 4..223 | 3..218 | 246 | 27.9 | Plus |
Dpse\GA11849-PA | 231 | GA11849-PA | 4..229 | 3..220 | 206 | 25.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20916-PA | 220 | GM20916-PA | 1..220 | 1..220 | 1137 | 98.2 | Plus |
Dsec\GM20919-PA | 229 | GM20919-PA | 4..224 | 3..218 | 255 | 28.7 | Plus |
Dsec\GM20918-PA | 231 | GM20918-PA | 4..229 | 3..220 | 238 | 25.7 | Plus |
Dsec\GM20912-PA | 226 | GM20912-PA | 6..226 | 5..220 | 235 | 26.1 | Plus |
Dsec\GM16190-PA | 228 | GM16190-PA | 4..228 | 3..220 | 195 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10445-PA | 225 | GD10445-PA | 1..225 | 1..220 | 1115 | 95.1 | Plus |
Dsim\GD10448-PA | 229 | GD10448-PA | 4..224 | 3..218 | 253 | 27.6 | Plus |
Dsim\GD10441-PA | 226 | GD10441-PA | 6..226 | 5..220 | 241 | 26.6 | Plus |
Dsim\GD10444-PA | 228 | GD10444-PA | 4..228 | 3..220 | 196 | 26.7 | Plus |
Dsim\GD10446-PA | 218 | GD10446-PA | 4..215 | 3..220 | 185 | 27.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15130-PA | 220 | GJ15130-PA | 1..220 | 1..220 | 826 | 71.8 | Plus |
Dvir\GJ15124-PA | 226 | GJ15124-PA | 6..224 | 5..218 | 259 | 28.6 | Plus |
Dvir\GJ15134-PA | 226 | GJ15134-PA | 4..221 | 3..218 | 228 | 25.7 | Plus |
Dvir\GJ15133-PA | 229 | GJ15133-PA | 4..227 | 3..220 | 211 | 27.2 | Plus |
Dvir\GJ15138-PA | 208 | GJ15138-PA | 4..208 | 6..220 | 205 | 28.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21777-PA | 220 | GK21777-PA | 1..220 | 1..220 | 813 | 65.9 | Plus |
Dwil\GK21771-PA | 226 | GK21771-PA | 6..224 | 5..218 | 250 | 26.8 | Plus |
Dwil\GK21776-PA | 228 | GK21776-PA | 4..228 | 3..220 | 218 | 27.2 | Plus |
Dwil\GK21780-PA | 228 | GK21780-PA | 5..223 | 4..218 | 214 | 26.7 | Plus |
Dwil\GK21783-PA | 217 | GK21783-PA | 4..214 | 3..217 | 210 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19095-PA | 220 | GE19095-PA | 1..220 | 1..220 | 1077 | 90.9 | Plus |
Dyak\GE19098-PA | 229 | GE19098-PA | 4..224 | 3..218 | 255 | 28.7 | Plus |
Dyak\GE19090-PA | 226 | GE19090-PA | 6..226 | 5..220 | 246 | 27.5 | Plus |
Dyak\GE19097-PA | 223 | GE19097-PA | 4..221 | 6..220 | 210 | 26.1 | Plus |
Dyak\GE24235-PA | 219 | GE24235-PA | 4..218 | 3..220 | 207 | 25.2 | Plus |
Translation from 373 to 1035
> RE01312.hyp MASTSSVKLIVYALDVLCTLLALVLISFGIYVAVSYNLNEIGQLTAYGYV GLGAAALLVVLWGYLSAWRENVCCTVTFIIFLCLVIIAQFAVVYLLITQE KTVASNLANALEATWEEELNSPGAMSLYQNWFQCCGRGSPQDYIVNERLP PETCFRNHDKSKPENLIHTGCRVEFENYWQHLTKIFNILALVLIGFELLL SVISCRLCNSIRNDARRSYF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsp42Ef-PA | 220 | CG12845-PA | 1..220 | 1..220 | 1150 | 100 | Plus |
Tsp42Ei-PB | 229 | CG12843-PB | 6..224 | 5..218 | 266 | 29 | Plus |
Tsp42Ei-PA | 229 | CG12843-PA | 6..224 | 5..218 | 266 | 29 | Plus |
Tsp42Ea-PC | 226 | CG18817-PC | 6..226 | 5..220 | 257 | 27.9 | Plus |
Tsp42Ea-PB | 226 | CG18817-PB | 6..226 | 5..220 | 257 | 27.9 | Plus |