Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE01338.complete Sequence
4102 bp (4102 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070899
> RE01338.complete
GGTCTCTCTTCAGCTGGAAACCCGTTCGCGAGCGTCGCGCATGCGCCGTG
TGTTTCGTAATTGCGATCGCGTTGTGTCCCAGTTTCTTGGCGTTCGCTTT
TCATTTCGTTGCGGTGGAATCGCTCGACTGTTGGCCAACCGAAATGCCTC
TCTGAAAGGTGGCTCGCTCAAGTCGAATAATCTAACCAAGCGGCCAAGTG
ATGTGCAATCGACTCGATCCGCCGACAGGATTCAGTTTGGGACTAAGACA
AAAACAGTATGAGATCGCATGTGGCCGTTTACAGGGCGCCAGAATCAGCA
GCACCACCACCACCGCCGCCCAACTACGCGTCCTTGCGATACCACCAGCA
TCCGTTGAGCCATTGGCCGGGTAGCCAGCATCCAGCTCCTGTGTACAGGT
TGCATCATGGTCCGCCGTCTGCACCACCGCCCAATTGGGCAGCTCAGTCG
GCTGGCCAACCACCTCAACCAGTTGGCTATGGAGTGGTTAATCAGCAGCG
GATCAATGAGTGCGCCGGCATACCGCTCATCTCGAATGCCTCCAGTCACT
TGTCGCCAGCCCAGCGACAGAGATTGCTGAGGAAATCCGCCCTTAAAACA
TGTCCAACTTGGCCACCTGGAGGGGCCACTATGTCCCAGCTGGCTGTGCA
TGCCCAGGGCATGCCGCTGCTCCAGCAGAATGGCAAGCACCATCTCCAGC
AACAGCAGATGCAGCACCACCAGCCACTACATCACCATCATCCTGTGACC
AACAACTGGAGTGGCTACCAGCCGATGAGCAGTCAGCCTGCTTTCAAGTT
GGCTGACAAATCTCGAGCCCTTCGCTATCAGAATTCGGCACCACCGGTGC
TCAGTAGCCAAGAGAAGACGCCTAACAATGCTGCTGGCCAGGATCAGGCC
ACCTCGCCAGCGGAGACCTGTCTGCCGAGGATCATTAAACCCAGGAAGCG
ACGAAAGAAGGATCGAAAACCGGGCAATGGGGTTTTGCTCAAAATTGAGG
CGGATATGCAACCGAAGATGTCCAATCCGCTGGACGGTTACACCGCGAAT
GCGGGAGCATCTTACCATCTACCATCTGGAATATTGCAGCATGATCATAC
GCACGGAGTCTGCTTCTGCCGAGAATGTGACCCACTTCGTTCGCTTTGGG
ATTACCCGCTCCGGCGATCGCTTTCCGATGCCTCTTCCAGCGAGCCAGGA
GGCGGAAGCCGAGAGTCCTCCTCCTCAACGTCATCCACTCACTCGGACAG
CTCCTGCGATAGCTCCATTTGTAGCCAGAGCCTGCCCAGCTCATTGGCCC
TGCAGGAGGAGACCACCGAGGAATTCGCTCCCATTACCGGCGATAGCAGC
CGGGCGGAAAAAGTGGGAGTAATCGGATCCCAGCGGAGTCATCCGAGCGC
AGTGGCCACACCTTCGCAATGCCTGAGCGATGATTCCGGCTACGGGGATA
TCCTGAGTGGAATCAACATTGCCAACGATCTGTTTGGAAATTGTTGGCGA
GGTGGGAAGCTGGGCAACGCCTCCTCCTCGATTTCCGCCCAGGCGGAGAC
GCTGCTCGATGCGAGCCTCAATGAGATATCACGCAAGCTGATCGAGACCT
GCAATGCAGTAGATCAGGCGGAATCGGAATCGGGATCGGGATTTGGATCG
GGTGCAGCCAGCGACAGTGGCTTGGATAGCGCTGGCAGCCACAACTGCGG
ATCGGGCCTTGTCTTTAACTTTGAGCATTTGAATCTGACGGATGCGACGC
CCACAGCCTTGGATTTTCTCGTGGATTGCAACAACAATAGCAGCAGCACC
ACCACCGCCGCCGCCGCCACCGCCACTACCATTGGCAACGGCAACAGTTT
GGGTTTGATGTGGCACGGGGGAAGGCAGTCTAGTGGAGGTGGCAGCCACG
ATGACAGCCAAGTGGCAGCTGCCAAACTGGGCCCAGACAGCCGGGCCACA
CCCACCAGGCTGATATTGGGCACGGTGGGTAAGCTGAAACCAGCGTTTTC
CACAATCTCGTGACGATGCCAGTGGAAAACTAATCAAATCCAAAGCCAAG
AAAATGGGAAACGAGACGAGACGATATCGCAGCCCAGAAAGTGGCTCATT
TTGCGACGATTTGGTGAAACGTGAGACGAGATAGCGATGCGTGGGCGCTT
TTGGATTGGAAAATGTAAATCTCCTCGATGGATTTTTGAATTTCTACCCA
ACCCAAGTTGCGCAACTCCAACGAACACAACGAAGAAAGAAGAAAACCCA
TTAAATGGATATAACGCACATGTGAGGCGGTCATCATCATCATCGTCACA
TCATCATCACCATCAGCAACATCGACGTGATCGGAGCGAAAAACAAAAGG
CCAACGAGTTGACCAAGTGGGCGCAGGCAGAGGAAGGCTGGCAAGCAGGC
TGTTGGATACGATCCCCGGCTAAATGGAAACTTATATAGACAGGCCGGGA
CTGGAAACCATGTACATACGAATCCCAGTCCGACTTCCATTTCAACTTTC
ACTTTCACTGCGGCGGCGGCGGCGTTTTGTATATCTGTATTTTTTAAGAC
ATTTTTCTTTTCCTTTTCTTTTTGCCAAGACCACAGATCCACAGATGACG
GAGCTGCGGGTGGGGGTTACGGGAAGGGTGCGACTCTTATGCAGATTTTG
TGGCGCAAAAAGAAGAAGAAACTGTAGAAATCGTGTAGATGTACGATGTG
AACTCTAGAGATACTTTAACTATACCCTCATACATATCTCCATCTACCTT
ACACATACAATTAGTTGTTGTTGTTATTTGTGCATTAACGTTATTCCATA
GGGCCAAAAAGCCAAGGAACCTGTCCCCAATTGTACTCCCAAAAATCTAG
GAATTATATAGGGTTACATATACAGTGGGTCGGTCGGTCCGTGGGTGTTA
ATTTTTATCGTAGAGCTTAGGCAACGTTCCTACATGTTAGTTTTGTATTT
TTATGTATTTTTTGGGTTCTATTTTATTTTAACTGATTAGTTGGTTTGGT
TTTTTATACTTAGTCCGTAATCGAAGCGCTACAACGTGAACTTTTATAGC
CGATAAGTTATATGTATATTGGGAAACACAAAAACAGATTGGATCTCTAG
TGGTTCATAGCGATGTTCTACTAAAAGCTTATATCTGTGCTTAGGCCCAA
AAAAGGGTTGATGATAATTTATTATAATATAGGGAAGATGATTTTTCAAC
AAGCCTCGTTTGAATAAAGAAACCAAAACGTTCAGAAGATTCGCTTTGAG
CTTATAACTCATTCTTTCCAATTGAATATTCATAAGCCTAAAGTGAGAGT
TTCATTCTCTGAGGCGATCATTCAGTTTATTCATAGAGGCGACCAGTATC
CATATCTTCGATTTAAAATTCGCATTTTCGACTTGTCTGCAATTTGAGGG
AACATAAAACATCCGAACGAAGATCTGGTGCACAATTAATTCCGACTGCG
ATCGCCTCGTCAAGCATAAAATCTAAATCTGAAAATCGAGAGCAGCCCTA
GTTACCTGCTTACTGCTTATTGCTTACCTGTGCTGCAGTTAGTCGGCGAG
TAAAAGTTTTCGCCTTATTTTTAATTAAAAGAAACTCACGAACGCGCAGC
GCGCACTGAAATTGCTTGAAGTTTTCCGCTCTGCTCGACGTCTCCTCCGG
CTCAAACTTGGCTCAACTTGGCTTGGATTGGCTTGGCTGAAATTAACTTG
GCTCGAATCGTGTTGGCTGGGAGTAGCAATCGGAGTTGTCTCAGCATCTC
GGCGCTGGAAAATGTCACAGATTTTCCATTGGCAGGTTCCGGGCAGACAG
TTTGTGTTACCATTCCCCAGATAGAAATTACCACTCGAAGCTAATTTATT
TAATTAATATTTTCACTAGTTCGTATTGTGTGCGCTCCCGCATTCTTATT
GTAATGCTTGTGTGTTTTGTTCGTAAGCATCGTTTTTGCACAAATAACAA
TCCCATAGTTAACCCGACCCATCATCAATACACCGCATTTGTAACCCACA
CACAATAATAAATATGGCCAACTTATTTATTTTGATTAAGCCCGAACGAC
GAGAACCCAATAAAAAGTGTAAACAAAAATGTCAAACAAAAAAAAAAAAA
AA
RE01338.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17786-RA | 4094 | CG17786-RA | 1..4091 | 2..4092 | 20410 | 99.9 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 20037964..20042060 | 4087..2 | 20055 | 99.4 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:12:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24214626..24218716 | 4092..2 | 20410 | 99.9 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 23955457..23959547 | 4092..2 | 20410 | 99.9 | Minus |
Blast to na_te.dros performed 2019-03-16 19:12:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2463 | 664..787 | 172 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6700..6825 | 636..760 | 140 | 59.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2424 | 686..756 | 139 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6857 | 673..772 | 138 | 64.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6809 | 683..768 | 134 | 65.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6885 | 673..781 | 133 | 64 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1180 | 667..762 | 127 | 61.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2727 | 697..819 | 121 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2738..2832 | 653..742 | 120 | 64.6 | Plus |
RE01338.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:13:15 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 20037964..20042060 | 1..4087 | 96 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:45:32 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 1..1755 | 259..2013 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:02:09 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 1..1755 | 259..2013 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:04 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 1..1755 | 259..2013 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:40 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 1..1755 | 259..2013 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:31 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 1..1755 | 259..2013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:28:49 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 1..4086 | 2..4087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:02:09 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 1..4086 | 2..4087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:04 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 2..4088 | 1..4087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:40 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 1..4086 | 2..4087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:31 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17786-RA | 2..4088 | 1..4087 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:15 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24214631..24218716 | 1..4087 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:15 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24214631..24218716 | 1..4087 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:15 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24214631..24218716 | 1..4087 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:04 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20040353..20044438 | 1..4087 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:02:28 Download gff for
RE01338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23955462..23959547 | 1..4087 | 99 | | Minus |
RE01338.pep Sequence
Translation from 258 to 2012
> RE01338.pep
MRSHVAVYRAPESAAPPPPPPNYASLRYHQHPLSHWPGSQHPAPVYRLHH
GPPSAPPPNWAAQSAGQPPQPVGYGVVNQQRINECAGIPLISNASSHLSP
AQRQRLLRKSALKTCPTWPPGGATMSQLAVHAQGMPLLQQNGKHHLQQQQ
MQHHQPLHHHHPVTNNWSGYQPMSSQPAFKLADKSRALRYQNSAPPVLSS
QEKTPNNAAGQDQATSPAETCLPRIIKPRKRRKKDRKPGNGVLLKIEADM
QPKMSNPLDGYTANAGASYHLPSGILQHDHTHGVCFCRECDPLRSLWDYP
LRRSLSDASSSEPGGGSRESSSSTSSTHSDSSCDSSICSQSLPSSLALQE
ETTEEFAPITGDSSRAEKVGVIGSQRSHPSAVATPSQCLSDDSGYGDILS
GINIANDLFGNCWRGGKLGNASSSISAQAETLLDASLNEISRKLIETCNA
VDQAESESGSGFGSGAASDSGLDSAGSHNCGSGLVFNFEHLNLTDATPTA
LDFLVDCNNNSSSTTTAAAATATTIGNGNSLGLMWHGGRQSSGGGSHDDS
QVAAAKLGPDSRATPTRLILGTVGKLKPAFSTIS*
RE01338.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17786-PA | 584 | CG17786-PA | 1..584 | 1..584 | 3105 | 100 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA14667-PB | 652 | GA14667-PB | 1..652 | 1..584 | 1251 | 58.9 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD18311-PA | 575 | GD18311-PA | 1..575 | 1..584 | 2959 | 96.2 | Plus |
RE01338.hyp Sequence
Translation from 258 to 2012
> RE01338.hyp
MRSHVAVYRAPESAAPPPPPPNYASLRYHQHPLSHWPGSQHPAPVYRLHH
GPPSAPPPNWAAQSAGQPPQPVGYGVVNQQRINECAGIPLISNASSHLSP
AQRQRLLRKSALKTCPTWPPGGATMSQLAVHAQGMPLLQQNGKHHLQQQQ
MQHHQPLHHHHPVTNNWSGYQPMSSQPAFKLADKSRALRYQNSAPPVLSS
QEKTPNNAAGQDQATSPAETCLPRIIKPRKRRKKDRKPGNGVLLKIEADM
QPKMSNPLDGYTANAGASYHLPSGILQHDHTHGVCFCRECDPLRSLWDYP
LRRSLSDASSSEPGGGSRESSSSTSSTHSDSSCDSSICSQSLPSSLALQE
ETTEEFAPITGDSSRAEKVGVIGSQRSHPSAVATPSQCLSDDSGYGDILS
GINIANDLFGNCWRGGKLGNASSSISAQAETLLDASLNEISRKLIETCNA
VDQAESESGSGFGSGAASDSGLDSAGSHNCGSGLVFNFEHLNLTDATPTA
LDFLVDCNNNSSSTTTAAAATATTIGNGNSLGLMWHGGRQSSGGGSHDDS
QVAAAKLGPDSRATPTRLILGTVGKLKPAFSTIS*
RE01338.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17786-PA | 584 | CG17786-PA | 1..584 | 1..584 | 3105 | 100 | Plus |