Clone RE01338 Report

Search the DGRC for RE01338

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:13
Well:38
Vector:pFlc-1
Associated Gene/TranscriptCG17786-RA
Protein status:RE01338.pep: gold
Preliminary Size:1755
Sequenced Size:4102

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17786 2001-12-14 Blastp of sequenced clone
CG17786 2002-01-01 Sim4 clustering to Release 2
CG17786 2003-01-01 Sim4 clustering to Release 3
CG17786 2008-04-29 Release 5.5 accounting
CG17786 2008-08-15 Release 5.9 accounting
CG17786 2008-12-18 5.12 accounting

Clone Sequence Records

RE01338.complete Sequence

4102 bp (4102 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070899

> RE01338.complete
GGTCTCTCTTCAGCTGGAAACCCGTTCGCGAGCGTCGCGCATGCGCCGTG
TGTTTCGTAATTGCGATCGCGTTGTGTCCCAGTTTCTTGGCGTTCGCTTT
TCATTTCGTTGCGGTGGAATCGCTCGACTGTTGGCCAACCGAAATGCCTC
TCTGAAAGGTGGCTCGCTCAAGTCGAATAATCTAACCAAGCGGCCAAGTG
ATGTGCAATCGACTCGATCCGCCGACAGGATTCAGTTTGGGACTAAGACA
AAAACAGTATGAGATCGCATGTGGCCGTTTACAGGGCGCCAGAATCAGCA
GCACCACCACCACCGCCGCCCAACTACGCGTCCTTGCGATACCACCAGCA
TCCGTTGAGCCATTGGCCGGGTAGCCAGCATCCAGCTCCTGTGTACAGGT
TGCATCATGGTCCGCCGTCTGCACCACCGCCCAATTGGGCAGCTCAGTCG
GCTGGCCAACCACCTCAACCAGTTGGCTATGGAGTGGTTAATCAGCAGCG
GATCAATGAGTGCGCCGGCATACCGCTCATCTCGAATGCCTCCAGTCACT
TGTCGCCAGCCCAGCGACAGAGATTGCTGAGGAAATCCGCCCTTAAAACA
TGTCCAACTTGGCCACCTGGAGGGGCCACTATGTCCCAGCTGGCTGTGCA
TGCCCAGGGCATGCCGCTGCTCCAGCAGAATGGCAAGCACCATCTCCAGC
AACAGCAGATGCAGCACCACCAGCCACTACATCACCATCATCCTGTGACC
AACAACTGGAGTGGCTACCAGCCGATGAGCAGTCAGCCTGCTTTCAAGTT
GGCTGACAAATCTCGAGCCCTTCGCTATCAGAATTCGGCACCACCGGTGC
TCAGTAGCCAAGAGAAGACGCCTAACAATGCTGCTGGCCAGGATCAGGCC
ACCTCGCCAGCGGAGACCTGTCTGCCGAGGATCATTAAACCCAGGAAGCG
ACGAAAGAAGGATCGAAAACCGGGCAATGGGGTTTTGCTCAAAATTGAGG
CGGATATGCAACCGAAGATGTCCAATCCGCTGGACGGTTACACCGCGAAT
GCGGGAGCATCTTACCATCTACCATCTGGAATATTGCAGCATGATCATAC
GCACGGAGTCTGCTTCTGCCGAGAATGTGACCCACTTCGTTCGCTTTGGG
ATTACCCGCTCCGGCGATCGCTTTCCGATGCCTCTTCCAGCGAGCCAGGA
GGCGGAAGCCGAGAGTCCTCCTCCTCAACGTCATCCACTCACTCGGACAG
CTCCTGCGATAGCTCCATTTGTAGCCAGAGCCTGCCCAGCTCATTGGCCC
TGCAGGAGGAGACCACCGAGGAATTCGCTCCCATTACCGGCGATAGCAGC
CGGGCGGAAAAAGTGGGAGTAATCGGATCCCAGCGGAGTCATCCGAGCGC
AGTGGCCACACCTTCGCAATGCCTGAGCGATGATTCCGGCTACGGGGATA
TCCTGAGTGGAATCAACATTGCCAACGATCTGTTTGGAAATTGTTGGCGA
GGTGGGAAGCTGGGCAACGCCTCCTCCTCGATTTCCGCCCAGGCGGAGAC
GCTGCTCGATGCGAGCCTCAATGAGATATCACGCAAGCTGATCGAGACCT
GCAATGCAGTAGATCAGGCGGAATCGGAATCGGGATCGGGATTTGGATCG
GGTGCAGCCAGCGACAGTGGCTTGGATAGCGCTGGCAGCCACAACTGCGG
ATCGGGCCTTGTCTTTAACTTTGAGCATTTGAATCTGACGGATGCGACGC
CCACAGCCTTGGATTTTCTCGTGGATTGCAACAACAATAGCAGCAGCACC
ACCACCGCCGCCGCCGCCACCGCCACTACCATTGGCAACGGCAACAGTTT
GGGTTTGATGTGGCACGGGGGAAGGCAGTCTAGTGGAGGTGGCAGCCACG
ATGACAGCCAAGTGGCAGCTGCCAAACTGGGCCCAGACAGCCGGGCCACA
CCCACCAGGCTGATATTGGGCACGGTGGGTAAGCTGAAACCAGCGTTTTC
CACAATCTCGTGACGATGCCAGTGGAAAACTAATCAAATCCAAAGCCAAG
AAAATGGGAAACGAGACGAGACGATATCGCAGCCCAGAAAGTGGCTCATT
TTGCGACGATTTGGTGAAACGTGAGACGAGATAGCGATGCGTGGGCGCTT
TTGGATTGGAAAATGTAAATCTCCTCGATGGATTTTTGAATTTCTACCCA
ACCCAAGTTGCGCAACTCCAACGAACACAACGAAGAAAGAAGAAAACCCA
TTAAATGGATATAACGCACATGTGAGGCGGTCATCATCATCATCGTCACA
TCATCATCACCATCAGCAACATCGACGTGATCGGAGCGAAAAACAAAAGG
CCAACGAGTTGACCAAGTGGGCGCAGGCAGAGGAAGGCTGGCAAGCAGGC
TGTTGGATACGATCCCCGGCTAAATGGAAACTTATATAGACAGGCCGGGA
CTGGAAACCATGTACATACGAATCCCAGTCCGACTTCCATTTCAACTTTC
ACTTTCACTGCGGCGGCGGCGGCGTTTTGTATATCTGTATTTTTTAAGAC
ATTTTTCTTTTCCTTTTCTTTTTGCCAAGACCACAGATCCACAGATGACG
GAGCTGCGGGTGGGGGTTACGGGAAGGGTGCGACTCTTATGCAGATTTTG
TGGCGCAAAAAGAAGAAGAAACTGTAGAAATCGTGTAGATGTACGATGTG
AACTCTAGAGATACTTTAACTATACCCTCATACATATCTCCATCTACCTT
ACACATACAATTAGTTGTTGTTGTTATTTGTGCATTAACGTTATTCCATA
GGGCCAAAAAGCCAAGGAACCTGTCCCCAATTGTACTCCCAAAAATCTAG
GAATTATATAGGGTTACATATACAGTGGGTCGGTCGGTCCGTGGGTGTTA
ATTTTTATCGTAGAGCTTAGGCAACGTTCCTACATGTTAGTTTTGTATTT
TTATGTATTTTTTGGGTTCTATTTTATTTTAACTGATTAGTTGGTTTGGT
TTTTTATACTTAGTCCGTAATCGAAGCGCTACAACGTGAACTTTTATAGC
CGATAAGTTATATGTATATTGGGAAACACAAAAACAGATTGGATCTCTAG
TGGTTCATAGCGATGTTCTACTAAAAGCTTATATCTGTGCTTAGGCCCAA
AAAAGGGTTGATGATAATTTATTATAATATAGGGAAGATGATTTTTCAAC
AAGCCTCGTTTGAATAAAGAAACCAAAACGTTCAGAAGATTCGCTTTGAG
CTTATAACTCATTCTTTCCAATTGAATATTCATAAGCCTAAAGTGAGAGT
TTCATTCTCTGAGGCGATCATTCAGTTTATTCATAGAGGCGACCAGTATC
CATATCTTCGATTTAAAATTCGCATTTTCGACTTGTCTGCAATTTGAGGG
AACATAAAACATCCGAACGAAGATCTGGTGCACAATTAATTCCGACTGCG
ATCGCCTCGTCAAGCATAAAATCTAAATCTGAAAATCGAGAGCAGCCCTA
GTTACCTGCTTACTGCTTATTGCTTACCTGTGCTGCAGTTAGTCGGCGAG
TAAAAGTTTTCGCCTTATTTTTAATTAAAAGAAACTCACGAACGCGCAGC
GCGCACTGAAATTGCTTGAAGTTTTCCGCTCTGCTCGACGTCTCCTCCGG
CTCAAACTTGGCTCAACTTGGCTTGGATTGGCTTGGCTGAAATTAACTTG
GCTCGAATCGTGTTGGCTGGGAGTAGCAATCGGAGTTGTCTCAGCATCTC
GGCGCTGGAAAATGTCACAGATTTTCCATTGGCAGGTTCCGGGCAGACAG
TTTGTGTTACCATTCCCCAGATAGAAATTACCACTCGAAGCTAATTTATT
TAATTAATATTTTCACTAGTTCGTATTGTGTGCGCTCCCGCATTCTTATT
GTAATGCTTGTGTGTTTTGTTCGTAAGCATCGTTTTTGCACAAATAACAA
TCCCATAGTTAACCCGACCCATCATCAATACACCGCATTTGTAACCCACA
CACAATAATAAATATGGCCAACTTATTTATTTTGATTAAGCCCGAACGAC
GAGAACCCAATAAAAAGTGTAAACAAAAATGTCAAACAAAAAAAAAAAAA
AA

RE01338.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17786-RA 4094 CG17786-RA 1..4091 2..4092 20410 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:12:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20037964..20042060 4087..2 20055 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24214626..24218716 4092..2 20410 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23955457..23959547 4092..2 20410 99.9 Minus
Blast to na_te.dros performed 2019-03-16 19:12:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2463 664..787 172 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6700..6825 636..760 140 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2424 686..756 139 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6857 673..772 138 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6809 683..768 134 65.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6885 673..781 133 64 Plus
roo 9092 roo DM_ROO 9092bp 1082..1180 667..762 127 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2727 697..819 121 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2738..2832 653..742 120 64.6 Plus

RE01338.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:13:15 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20037964..20042060 1..4087 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:45:32 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 1..1755 259..2013 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:02:09 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 1..1755 259..2013 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:04 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 1..1755 259..2013 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:40 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 1..1755 259..2013 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:31 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 1..1755 259..2013 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:28:49 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 1..4086 2..4087 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:02:09 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 1..4086 2..4087 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:04 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 2..4088 1..4087 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:40 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 1..4086 2..4087 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:31 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
CG17786-RA 2..4088 1..4087 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:15 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24214631..24218716 1..4087 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:15 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24214631..24218716 1..4087 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:15 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24214631..24218716 1..4087 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:04 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20040353..20044438 1..4087 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:02:28 Download gff for RE01338.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23955462..23959547 1..4087 99   Minus

RE01338.pep Sequence

Translation from 258 to 2012

> RE01338.pep
MRSHVAVYRAPESAAPPPPPPNYASLRYHQHPLSHWPGSQHPAPVYRLHH
GPPSAPPPNWAAQSAGQPPQPVGYGVVNQQRINECAGIPLISNASSHLSP
AQRQRLLRKSALKTCPTWPPGGATMSQLAVHAQGMPLLQQNGKHHLQQQQ
MQHHQPLHHHHPVTNNWSGYQPMSSQPAFKLADKSRALRYQNSAPPVLSS
QEKTPNNAAGQDQATSPAETCLPRIIKPRKRRKKDRKPGNGVLLKIEADM
QPKMSNPLDGYTANAGASYHLPSGILQHDHTHGVCFCRECDPLRSLWDYP
LRRSLSDASSSEPGGGSRESSSSTSSTHSDSSCDSSICSQSLPSSLALQE
ETTEEFAPITGDSSRAEKVGVIGSQRSHPSAVATPSQCLSDDSGYGDILS
GINIANDLFGNCWRGGKLGNASSSISAQAETLLDASLNEISRKLIETCNA
VDQAESESGSGFGSGAASDSGLDSAGSHNCGSGLVFNFEHLNLTDATPTA
LDFLVDCNNNSSSTTTAAAATATTIGNGNSLGLMWHGGRQSSGGGSHDDS
QVAAAKLGPDSRATPTRLILGTVGKLKPAFSTIS*

RE01338.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17786-PA 584 CG17786-PA 1..584 1..584 3105 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14667-PB 652 GA14667-PB 1..652 1..584 1251 58.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18311-PA 575 GD18311-PA 1..575 1..584 2959 96.2 Plus

RE01338.hyp Sequence

Translation from 258 to 2012

> RE01338.hyp
MRSHVAVYRAPESAAPPPPPPNYASLRYHQHPLSHWPGSQHPAPVYRLHH
GPPSAPPPNWAAQSAGQPPQPVGYGVVNQQRINECAGIPLISNASSHLSP
AQRQRLLRKSALKTCPTWPPGGATMSQLAVHAQGMPLLQQNGKHHLQQQQ
MQHHQPLHHHHPVTNNWSGYQPMSSQPAFKLADKSRALRYQNSAPPVLSS
QEKTPNNAAGQDQATSPAETCLPRIIKPRKRRKKDRKPGNGVLLKIEADM
QPKMSNPLDGYTANAGASYHLPSGILQHDHTHGVCFCRECDPLRSLWDYP
LRRSLSDASSSEPGGGSRESSSSTSSTHSDSSCDSSICSQSLPSSLALQE
ETTEEFAPITGDSSRAEKVGVIGSQRSHPSAVATPSQCLSDDSGYGDILS
GINIANDLFGNCWRGGKLGNASSSISAQAETLLDASLNEISRKLIETCNA
VDQAESESGSGFGSGAASDSGLDSAGSHNCGSGLVFNFEHLNLTDATPTA
LDFLVDCNNNSSSTTTAAAATATTIGNGNSLGLMWHGGRQSSGGGSHDDS
QVAAAKLGPDSRATPTRLILGTVGKLKPAFSTIS*

RE01338.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17786-PA 584 CG17786-PA 1..584 1..584 3105 100 Plus