BDGP Sequence Production Resources |
Search the DGRC for RE01362
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 13 |
Well: | 62 |
Vector: | pFlc-1 |
Associated Gene/Transcript | SpdS-RA |
Protein status: | RE01362.pep: gold |
Preliminary Size: | 1455 |
Sequenced Size: | 1484 |
Gene | Date | Evidence |
---|---|---|
CG8327 | 2002-11-22 | Blastp of sequenced clone |
SpdS | 2008-04-29 | Release 5.5 accounting |
SpdS | 2008-08-15 | Release 5.9 accounting |
SpdS | 2008-12-18 | 5.12 accounting |
1484 bp (1484 high quality bases) assembled on 2002-11-22
GenBank Submission: BT003549
> RE01362.complete CTTTTCAAACGCCGATTCGAATGCGGCATTAAACAAATGGATTCCCTTAA CAACGGATGGTTCAGCGAACTGCAGGCCGATCTCTGGCCCGGTCAGTCAT TCTCCCTGAAAGTCAAGGAGGTCATCCACAAGGAGAAGTCCCGGTTCCAA GACATCCAGATCGTTGAAACCGAAACCTATGGACGGTGCCTAATTCTGGA CGGAATCATTCAGTGCACGGCCAGGGATGAGTTCTCGTACCAGGAGATGA TATCTTTCCTGCCGCTCTGCGCCCATCCCAATCCCAAAAAGGTCCTGATC GTGGGCGGTGGCGATGGCGGCGTTGCTCGCGAGGTGGTAAAGCATCCACT GGTCGAGGAAGTGCATCAGGTGGAAATCGACGACCGTGTCGTCGAGCTGT CCAAGCAATATCTCCCAGCGATGGCCTGTGGTTTCGCCAACGAGAAGTTG AAGCTTACCATTGGCGATGGATTCGACTATATGAAGAAACACAAGAACGA ATTTGATGTCATCATCACCGACAGCTCGGATCCCATTGGTCCGGCAGTGA GCCTGTTTCAGGAAAGCTACTACGAGCTAATGAAACACGCGCTGAAGGAT GACGGAATCGTGTGCTCCCAGGGCGGTAGCTTCTGGCTGGACCTGGACTA CATCAAGAAGACCATGTCCGGCTGCAAGGAGCACTTTGCTAAGGTGGCCT ATGCCGTCACCTCCGTTCCGTCCTATCCCTGCGGCCACATTGGCTTCGTC ATGGGCTCCCTGAACAAAAACCAGGACTTCGCTACTCCCAAGCTTGGAAA GTCCGAAATCGATTCTATAGACCTAAGGTACTACTCCTCCGAGGTTCACT CCGCCGCCTTTGCCTTGCCTCGATGGGTGCAGAAGCACTTTTACGAATGA CCAGGTTGCGGAAAGATTCGTGTGTATCTGTTTGTTAAAAATAAATATGA TAATAATATGACTTGTTTATCATCGCTTCTTAAATTCTTGGATATTTTCA ACAAATGCTGACTCTTGCAATGATTCATTTTTAGTCGAATTTTTGTAGCC TGAGTATTTTCCTTCCAATCCGACTACCATCTTTCAGTTATTTTACTGTT GAAAATAGAACAAATTGTAATGTTTATTACGTAATGATATATACAGTTGG CTCTATTTAATTTTTGTATTTGTAAGTGGATGCTGGGTTAACATAATGAG ACTTATTGCAATATTTTACACGACCGAATGTTACTCTCATTTATATATCG CATATATTGCAAAACTTTGAAAGGAAGCGTTTCTTATATGCAAAAATGAC CTTAACTGCATGTGAATAATTAACTAAAAACTGATATTCAATTTCAATAA CTTAATAGAAATTAAATCTTCAACCTGTTTAATGACTAATTAAATATTGT TATAGTTAGGAAACGCAATTGATACATAATTACAAAATTAGATGTAAAAT ATGTACAATCATTTAAAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SpdS-RA | 1518 | SpdS-RA | 52..1517 | 1..1466 | 7315 | 99.9 | Plus |
SpdS.b | 1889 | SpdS.b | 593..1888 | 171..1466 | 6480 | 100 | Plus |
SpdS-RB | 1707 | SpdS-RB | 411..1706 | 171..1466 | 6480 | 100 | Plus |
SpdS.b | 1889 | SpdS.b | 47..216 | 1..170 | 835 | 99.4 | Plus |
SpdS-RB | 1707 | SpdS-RB | 47..216 | 1..170 | 835 | 99.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5457499..5457668 | 1..170 | 99 | -> | Plus |
chr3R | 5458191..5459486 | 171..1468 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SpdS-RA | 1..864 | 37..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SpdS-RA | 1..864 | 37..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SpdS-RA | 1..864 | 37..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SpdS-RA | 1..864 | 37..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SpdS-RA | 1..864 | 37..900 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SpdS-RA | 27..1492 | 1..1466 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SpdS-RA | 47..1513 | 1..1467 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SpdS-RA | 45..1511 | 1..1467 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SpdS-RA | 27..1492 | 1..1466 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
SpdS-RA | 45..1511 | 1..1467 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9631685..9631854 | 1..170 | 99 | -> | Plus |
3R | 9632377..9633672 | 171..1468 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9631685..9631854 | 1..170 | 99 | -> | Plus |
3R | 9632377..9633672 | 171..1468 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9631685..9631854 | 1..170 | 99 | -> | Plus |
3R | 9632377..9633672 | 171..1468 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5457407..5457576 | 1..170 | 99 | -> | Plus |
arm_3R | 5458099..5459394 | 171..1468 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9373208..9374503 | 171..1468 | 99 | Plus | |
3R | 9372516..9372685 | 1..170 | 99 | -> | Plus |
Translation from 0 to 899
> RE01362.hyp LIKRRFECGIKQMDSLNNGWFSELQADLWPGQSFSLKVKEVIHKEKSRFQ DIQIVETETYGRCLILDGIIQCTARDEFSYQEMISFLPLCAHPNPKKVLI VGGGDGGVAREVVKHPLVEEVHQVEIDDRVVELSKQYLPAMACGFANEKL KLTIGDGFDYMKKHKNEFDVIITDSSDPIGPAVSLFQESYYELMKHALKD DGIVCSQGGSFWLDLDYIKKTMSGCKEHFAKVAYAVTSVPSYPCGHIGFV MGSLNKNQDFATPKLGKSEIDSIDLRYYSSEVHSAAFALPRWVQKHFYE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SpdS-PC | 287 | CG8327-PC | 1..287 | 13..299 | 1526 | 100 | Plus |
SpdS-PA | 287 | CG8327-PA | 1..287 | 13..299 | 1526 | 100 | Plus |
SpdS-PB | 217 | CG8327-PB | 1..217 | 83..299 | 1155 | 100 | Plus |
CG4300-PA | 367 | CG4300-PA | 103..320 | 1..208 | 158 | 26.6 | Plus |
CG4300-PD | 458 | CG4300-PD | 103..320 | 1..208 | 158 | 26.6 | Plus |
Translation from 36 to 899
> RE01362.pep MDSLNNGWFSELQADLWPGQSFSLKVKEVIHKEKSRFQDIQIVETETYGR CLILDGIIQCTARDEFSYQEMISFLPLCAHPNPKKVLIVGGGDGGVAREV VKHPLVEEVHQVEIDDRVVELSKQYLPAMACGFANEKLKLTIGDGFDYMK KHKNEFDVIITDSSDPIGPAVSLFQESYYELMKHALKDDGIVCSQGGSFW LDLDYIKKTMSGCKEHFAKVAYAVTSVPSYPCGHIGFVMGSLNKNQDFAT PKLGKSEIDSIDLRYYSSEVHSAAFALPRWVQKHFYE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16181-PA | 287 | GF16181-PA | 1..286 | 1..286 | 1488 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16982-PA | 287 | GG16982-PA | 1..287 | 1..287 | 1519 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18040-PA | 289 | GH18040-PA | 1..289 | 1..287 | 1283 | 80.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
SpdS-PC | 287 | CG8327-PC | 1..287 | 1..287 | 1526 | 100 | Plus |
SpdS-PA | 287 | CG8327-PA | 1..287 | 1..287 | 1526 | 100 | Plus |
SpdS-PB | 217 | CG8327-PB | 1..217 | 71..287 | 1155 | 100 | Plus |
Sms-PB | 366 | CG4300-PB | 140..319 | 26..196 | 156 | 30.4 | Plus |
Sms-PA | 367 | CG4300-PA | 141..320 | 26..196 | 156 | 30.4 | Plus |
Sms-PC | 457 | CG4300-PC | 140..319 | 26..196 | 156 | 30.4 | Plus |
Sms-PD | 458 | CG4300-PD | 141..320 | 26..196 | 156 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23961-PA | 289 | GI23961-PA | 1..289 | 1..287 | 1272 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21885-PA | 197 | GL21885-PA | 1..195 | 1..195 | 930 | 86.7 | Plus |
Dper\GL25003-PA | 367 | GL25003-PA | 141..321 | 26..197 | 156 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20990-PA | 292 | GA20990-PA | 1..285 | 1..283 | 1298 | 82.5 | Plus |
Dpse\GA18092-PB | 369 | GA18092-PB | 143..323 | 26..197 | 156 | 31.2 | Plus |
Dpse\GA18092-PA | 367 | GA18092-PA | 141..321 | 26..197 | 156 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23823-PA | 287 | GM23823-PA | 1..287 | 1..287 | 1522 | 98.6 | Plus |
Dsec\GM24668-PA | 367 | GM24668-PA | 141..321 | 26..197 | 146 | 30.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18634-PA | 279 | GD18634-PA | 1..279 | 1..287 | 1327 | 88.7 | Plus |
Dsim\GD12732-PA | 420 | GD12732-PA | 194..374 | 26..197 | 150 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11148-PA | 304 | GJ11148-PA | 35..299 | 23..285 | 1125 | 74.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10845-PA | 289 | GK10845-PA | 1..289 | 1..287 | 1320 | 84.1 | Plus |