Clone RE01432 Report

Search the DGRC for RE01432

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:14
Well:32
Vector:pFlc-1
Associated Gene/TranscriptCG12730-RA
Protein status:RE01432.pep: gold
Preliminary Size:447
Sequenced Size:1256

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12730 2001-11-29 Blastp of sequenced clone
CG12730 2002-01-01 Sim4 clustering to Release 2
CG12730 2003-01-01 Sim4 clustering to Release 3
CG12730 2008-04-29 Release 5.5 accounting
CG12730 2008-08-15 Release 5.9 accounting
CG12730 2008-12-18 5.12 accounting

Clone Sequence Records

RE01432.complete Sequence

1256 bp (1256 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069764

> RE01432.complete
AGTGGCATTCTGTGCGTGCTGGCGAGCGCAATATGAATTAGTCAGCGGCG
CTTCGCTACATTTGCTACATTGGCTTTAATCGCTCGTTTCTGAGGCATCT
ATTCGGCTGGACAATCTGGATTAACTGCATCCAAAACGTATATATCTTGT
ATTGGCCGCGATGTCGTTGACGGGAACCCAGGACTACGATCGCAAATACC
TGCTCAGCATGCCGGGCCTGTGCAAGCTGGCCTGTTTGCTGTGCAGCTTT
GTTGGAATATTGTGCATCATCTGCGGACCGGTGCGCGTGAGCAATTTCCG
CGGCAGTTTCTACCTGGCCGTAGTCACCATCGGATTCGTGGCCACCGGCT
GCCTGCTCCTGGCCAGGTATCTCCGGTTGTGGCAGCGCCAGTTCTGCCGA
TGCGATCCCACGCTCTGGTCCCTGGCGGTGCACTCCTCATTGGCCCTGGC
CTACTTCACGGCCTCCGGACTCGTACTCTCCCTGGATATTGGAGCCTATA
CGGCGGCGGCGTTCTTTGGCCTGACAGCATTTTGCATCAACGGACTGGAG
GCCTATGGAAACTATCGGCGCAGTCGCCAGCGGGAGGTGGCCACCCAAAC
GATATAGACTTGGTTTCAGGTGCACGAACCCAGCTTTTGGTGGCTCTTAC
TACGTTAGGCTTACTCTGTGTGTGTATCTGTGTGAGAGCGAGTATCTGTG
TGCGAACGAGTATCTGTGTGAGTGCCAGTGCGTGCGCGTGTGTGTGAGTT
TGTTTTGAGAGAGCGAGTATCGCTTGCGTTTGCTTGAAGCATTTAAGTCT
GAAGTTTGAAATTGTGGCAAGCTTTTGTCGCGGGAACAGTTACCGTATGT
GTTATCTAATAGTCGCTAGATATAGGTCAAGAAGTGAAGAAGATAAAGCC
AGTCGATCGCAGCAATAACGTAGATATAATAGCGAACAGAAAGCGAGAGA
AAACCACTAACAAGAGAGCAAATTCCAAAGAGATAAGTTGTATTGTGCCT
TCTGGCTCTGCTTCTTCCCTTCTTCTGATAACTGGTTAACAATGCGTGAA
TATATATGTACATATATATACCCGATTTTTTTTTTACTTTTATTAAGTAC
ATAGTATTTGTGTGTCTCAAGTGAATATACATTGAAGTAGTTAGTTTTTA
GCACAATGCTTTTCATGACCACTGAATTGTTGTATTTATAAACAAATAAA
TCGTTTGCAATGGAAGAATAAAACAAAAATACATAAATGCAAAAAAAAAA
AAAAAA

RE01432.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-RA 1358 CG12730-RA 102..1340 1..1239 6195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 5410449..5411178 511..1239 3480 98.8 Plus
chrX 22417052 chrX 5409978..5410251 238..511 1325 98.9 Plus
chrX 22417052 chrX 5409668..5409905 1..238 1145 98.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:02:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5518043..5518771 511..1239 3645 100 Plus
X 23542271 X 5517571..5517844 238..511 1370 100 Plus
X 23542271 X 5517261..5517498 1..238 1190 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 5526141..5526869 511..1239 3645 100 Plus
X 23527363 X 5525669..5525942 238..511 1370 100 Plus
X 23527363 X 5525359..5525596 1..238 1190 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:02:38 has no hits.

RE01432.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:03:34 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 5409668..5409905 1..238 98 -> Plus
chrX 5409979..5410251 239..511 98 -> Plus
chrX 5410450..5410604 512..666 98 == Plus
chrX 5410692..5411178 754..1240 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:45:39 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 1..447 161..607 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:50 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 1..447 161..607 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:41:53 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 1..447 161..607 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:46:03 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 1..447 161..607 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:29:01 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 1..447 161..607 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:53:22 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 1..1216 1..1216 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:50 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 1..1216 1..1216 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:41:53 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 3..1241 1..1239 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:46:03 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 1..1216 1..1216 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:29:01 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
CG12730-RA 3..1241 1..1239 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:34 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
X 5517261..5517498 1..238 100 -> Plus
X 5517572..5517844 239..511 100 -> Plus
X 5518044..5518771 512..1240 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:34 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
X 5517261..5517498 1..238 100 -> Plus
X 5517572..5517844 239..511 100 -> Plus
X 5518044..5518771 512..1240 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:03:34 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
X 5517261..5517498 1..238 100 -> Plus
X 5517572..5517844 239..511 100 -> Plus
X 5518044..5518771 512..1240 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:41:53 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5411294..5411531 1..238 100 -> Plus
arm_X 5411605..5411877 239..511 100 -> Plus
arm_X 5412077..5412804 512..1240 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:25 Download gff for RE01432.complete
Subject Subject Range Query Range Percent Splice Strand
X 5525359..5525596 1..238 100 -> Plus
X 5525670..5525942 239..511 100 -> Plus
X 5526142..5526869 512..1240 99   Plus

RE01432.hyp Sequence

Translation from 160 to 606

> RE01432.hyp
MSLTGTQDYDRKYLLSMPGLCKLACLLCSFVGILCIICGPVRVSNFRGSF
YLAVVTIGFVATGCLLLARYLRLWQRQFCRCDPTLWSLAVHSSLALAYFT
ASGLVLSLDIGAYTAAAFFGLTAFCINGLEAYGNYRRSRQREVATQTI*

RE01432.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-PB 148 CG12730-PB 1..148 1..148 776 100 Plus
CG12730-PA 148 CG12730-PA 1..148 1..148 776 100 Plus

RE01432.pep Sequence

Translation from 160 to 606

> RE01432.pep
MSLTGTQDYDRKYLLSMPGLCKLACLLCSFVGILCIICGPVRVSNFRGSF
YLAVVTIGFVATGCLLLARYLRLWQRQFCRCDPTLWSLAVHSSLALAYFT
ASGLVLSLDIGAYTAAAFFGLTAFCINGLEAYGNYRRSRQREVATQTI*

RE01432.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21088-PA 146 GF21088-PA 1..146 3..148 621 81.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18767-PA 148 GG18767-PA 1..148 1..148 756 98.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24760-PA 144 GH24760-PA 1..144 3..148 475 64.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG12730-PB 148 CG12730-PB 1..148 1..148 776 100 Plus
CG12730-PA 148 CG12730-PA 1..148 1..148 776 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15794-PA 144 GI15794-PA 1..144 3..148 403 58.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16442-PA 149 GL16442-PA 4..149 3..148 528 74.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11776-PA 149 GA11776-PA 4..149 3..148 543 76 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12417-PA 148 GM12417-PA 1..148 1..148 758 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:19:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16736-PA 148 GD16736-PA 1..148 1..148 751 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18647-PA 144 GJ18647-PA 1..144 3..148 445 63.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10128-PA 147 GK10128-PA 1..146 3..148 508 71.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16411-PA 148 GE16411-PA 1..148 1..148 755 98.6 Plus