BDGP Sequence Production Resources |
Search the DGRC for RE01432
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 14 |
Well: | 32 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12730-RA |
Protein status: | RE01432.pep: gold |
Preliminary Size: | 447 |
Sequenced Size: | 1256 |
Gene | Date | Evidence |
---|---|---|
CG12730 | 2001-11-29 | Blastp of sequenced clone |
CG12730 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12730 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12730 | 2008-04-29 | Release 5.5 accounting |
CG12730 | 2008-08-15 | Release 5.9 accounting |
CG12730 | 2008-12-18 | 5.12 accounting |
1256 bp (1256 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069764
> RE01432.complete AGTGGCATTCTGTGCGTGCTGGCGAGCGCAATATGAATTAGTCAGCGGCG CTTCGCTACATTTGCTACATTGGCTTTAATCGCTCGTTTCTGAGGCATCT ATTCGGCTGGACAATCTGGATTAACTGCATCCAAAACGTATATATCTTGT ATTGGCCGCGATGTCGTTGACGGGAACCCAGGACTACGATCGCAAATACC TGCTCAGCATGCCGGGCCTGTGCAAGCTGGCCTGTTTGCTGTGCAGCTTT GTTGGAATATTGTGCATCATCTGCGGACCGGTGCGCGTGAGCAATTTCCG CGGCAGTTTCTACCTGGCCGTAGTCACCATCGGATTCGTGGCCACCGGCT GCCTGCTCCTGGCCAGGTATCTCCGGTTGTGGCAGCGCCAGTTCTGCCGA TGCGATCCCACGCTCTGGTCCCTGGCGGTGCACTCCTCATTGGCCCTGGC CTACTTCACGGCCTCCGGACTCGTACTCTCCCTGGATATTGGAGCCTATA CGGCGGCGGCGTTCTTTGGCCTGACAGCATTTTGCATCAACGGACTGGAG GCCTATGGAAACTATCGGCGCAGTCGCCAGCGGGAGGTGGCCACCCAAAC GATATAGACTTGGTTTCAGGTGCACGAACCCAGCTTTTGGTGGCTCTTAC TACGTTAGGCTTACTCTGTGTGTGTATCTGTGTGAGAGCGAGTATCTGTG TGCGAACGAGTATCTGTGTGAGTGCCAGTGCGTGCGCGTGTGTGTGAGTT TGTTTTGAGAGAGCGAGTATCGCTTGCGTTTGCTTGAAGCATTTAAGTCT GAAGTTTGAAATTGTGGCAAGCTTTTGTCGCGGGAACAGTTACCGTATGT GTTATCTAATAGTCGCTAGATATAGGTCAAGAAGTGAAGAAGATAAAGCC AGTCGATCGCAGCAATAACGTAGATATAATAGCGAACAGAAAGCGAGAGA AAACCACTAACAAGAGAGCAAATTCCAAAGAGATAAGTTGTATTGTGCCT TCTGGCTCTGCTTCTTCCCTTCTTCTGATAACTGGTTAACAATGCGTGAA TATATATGTACATATATATACCCGATTTTTTTTTTACTTTTATTAAGTAC ATAGTATTTGTGTGTCTCAAGTGAATATACATTGAAGTAGTTAGTTTTTA GCACAATGCTTTTCATGACCACTGAATTGTTGTATTTATAAACAAATAAA TCGTTTGCAATGGAAGAATAAAACAAAAATACATAAATGCAAAAAAAAAA AAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12730-RA | 1358 | CG12730-RA | 102..1340 | 1..1239 | 6195 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 5410449..5411178 | 511..1239 | 3480 | 98.8 | Plus |
chrX | 22417052 | chrX | 5409978..5410251 | 238..511 | 1325 | 98.9 | Plus |
chrX | 22417052 | chrX | 5409668..5409905 | 1..238 | 1145 | 98.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 5409668..5409905 | 1..238 | 98 | -> | Plus |
chrX | 5409979..5410251 | 239..511 | 98 | -> | Plus |
chrX | 5410450..5410604 | 512..666 | 98 | == | Plus |
chrX | 5410692..5411178 | 754..1240 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12730-RA | 1..447 | 161..607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12730-RA | 1..447 | 161..607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12730-RA | 1..447 | 161..607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12730-RA | 1..447 | 161..607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12730-RA | 1..447 | 161..607 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12730-RA | 1..1216 | 1..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12730-RA | 1..1216 | 1..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12730-RA | 3..1241 | 1..1239 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12730-RA | 1..1216 | 1..1216 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12730-RA | 3..1241 | 1..1239 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5517261..5517498 | 1..238 | 100 | -> | Plus |
X | 5517572..5517844 | 239..511 | 100 | -> | Plus |
X | 5518044..5518771 | 512..1240 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5517261..5517498 | 1..238 | 100 | -> | Plus |
X | 5517572..5517844 | 239..511 | 100 | -> | Plus |
X | 5518044..5518771 | 512..1240 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5517261..5517498 | 1..238 | 100 | -> | Plus |
X | 5517572..5517844 | 239..511 | 100 | -> | Plus |
X | 5518044..5518771 | 512..1240 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 5411294..5411531 | 1..238 | 100 | -> | Plus |
arm_X | 5411605..5411877 | 239..511 | 100 | -> | Plus |
arm_X | 5412077..5412804 | 512..1240 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 5525359..5525596 | 1..238 | 100 | -> | Plus |
X | 5525670..5525942 | 239..511 | 100 | -> | Plus |
X | 5526142..5526869 | 512..1240 | 99 | Plus |
Translation from 160 to 606
> RE01432.hyp MSLTGTQDYDRKYLLSMPGLCKLACLLCSFVGILCIICGPVRVSNFRGSF YLAVVTIGFVATGCLLLARYLRLWQRQFCRCDPTLWSLAVHSSLALAYFT ASGLVLSLDIGAYTAAAFFGLTAFCINGLEAYGNYRRSRQREVATQTI*
Translation from 160 to 606
> RE01432.pep MSLTGTQDYDRKYLLSMPGLCKLACLLCSFVGILCIICGPVRVSNFRGSF YLAVVTIGFVATGCLLLARYLRLWQRQFCRCDPTLWSLAVHSSLALAYFT ASGLVLSLDIGAYTAAAFFGLTAFCINGLEAYGNYRRSRQREVATQTI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21088-PA | 146 | GF21088-PA | 1..146 | 3..148 | 621 | 81.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18767-PA | 148 | GG18767-PA | 1..148 | 1..148 | 756 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24760-PA | 144 | GH24760-PA | 1..144 | 3..148 | 475 | 64.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12730-PB | 148 | CG12730-PB | 1..148 | 1..148 | 776 | 100 | Plus |
CG12730-PA | 148 | CG12730-PA | 1..148 | 1..148 | 776 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15794-PA | 144 | GI15794-PA | 1..144 | 3..148 | 403 | 58.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16442-PA | 149 | GL16442-PA | 4..149 | 3..148 | 528 | 74.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11776-PA | 149 | GA11776-PA | 4..149 | 3..148 | 543 | 76 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12417-PA | 148 | GM12417-PA | 1..148 | 1..148 | 758 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16736-PA | 148 | GD16736-PA | 1..148 | 1..148 | 751 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18647-PA | 144 | GJ18647-PA | 1..144 | 3..148 | 445 | 63.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10128-PA | 147 | GK10128-PA | 1..146 | 3..148 | 508 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16411-PA | 148 | GE16411-PA | 1..148 | 1..148 | 755 | 98.6 | Plus |