BDGP Sequence Production Resources |
Search the DGRC for RE01471
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 14 |
Well: | 71 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Tdrd3-RA |
Protein status: | RE01471.pep: gold |
Preliminary Size: | 2511 |
Sequenced Size: | 2657 |
Gene | Date | Evidence |
---|---|---|
CG13472 | 2001-11-29 | Blastp of sequenced clone |
CG13472 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13472 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13472 | 2008-04-29 | Release 5.5 accounting |
CG13472 | 2008-08-15 | Release 5.9 accounting |
CG13472 | 2008-12-18 | 5.12 accounting |
2657 bp (2657 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069766
> RE01471.complete AATACTTTTGTCATCCCTAGTCCGGAGTTGCAAAAAAATCGTCTTCATGA AAAAATGGAATTAGGCAAGAAACTACGAGAAGTCGGGTGGTACCTGACAG AGGAGGGCCTTAAAATCGTGACAACAGCCGTCGGCAGCGAGGATGTCCGG AAAATAGTCAATGATGCACTGAATCGAGATCTGCGCGATATTGGCGGTGG CGCACTGCCCGCGAAACGCGAAGATGCCACTTTGCCCGGTAAAATTGTGC TGCAGGTTCAGCGTGTGCGAAATATTGCCGCTCCCAAGGCGAATGAGGAA TCGAAGGCGGCGCCACGCCTCCTTCAGTTGGATCTGAGTGATGGGCAGAA TTCCATAAAGGCCTTGGAGCTGGAGCCAGTTCCCCAACTGAATCTCAATG TGGCTCCCGGAAGCAAGATCTATTTCAAGGCCGAGAAACTGCAGCTTATG CAGGGATTCCTGCTGCTAAAGTCCAGTGAAATTCAGCTGCTCGGCGGCCG TGTGGATGCACTCTACGAGAAATGGGATCTGGCCAGGACCATGATGAGAT ATGCGCGCAGTGGGCGCCCCTTGAATGGGACATCAGCGCCACCCCCGTGG GTGGCATTTGGCCGAAAAATCGATAGCAACGCCGAAAGCGAAATGAACTT TAAGAGCCTGGGCGAGGGCGACAAGGACAAGCCGGCAAAGGAGAACGAAG AGTTCAATGCCATGCGCACAGAGGCCATTGCCGTGGCCACCAAGGCCGGC GGCAAGAAGATCTTTGGCGGCGGTGGCCAGAACATTATCGATCACAATGT TAAGAAGATCCTAGACAAGGGCTTCAGCGAGGAGGAGGCCCGCAGTGCCT TATCTGCTACCCGAAACAACTTGGAGCGCGCCCTATACAATCTAAAAAGA CGCAGTGAAGCTGGCGGTGTGGGTCCGATCGAATCCGTGGGTCGTCCGGG ACGCGGAGATCGTCCGCCCAGAGAGGGAAAGCGTGGAGCTAGCGCCAAGG ACGAAGTTGAAGCACCCAAGCCGGCTGCCAACACCACGCTGTTTGATTTC CTAACCAATAAACTGCCCGCCAAGGAAACACCGGCCGCTAGTAATGCAGA AACCTTCGCTGCCGCTCCAACTGCCGCTCCGACTGCCCCACCCACTACCA ATCACTTCAATCCATTTAAGCAATATGGAAGCTCGCGCTTCAGCGATTCC GAGAGCAAACCTTCAGCTATGGGCGGAGGCGGCAAGTTTGCAGATCGTTC TAGGTTTGAGAACAACGTATCGAGCAGCTTTGCCGCACATCGTGGTGGAC ATGTGGGTTCGTCGCGAGGCGGTGGCCGTAACCGGGGTGGCGGCAGGGAC GAAAGGCCACCAAGAGAGGAGCGAGCCTACAGGGAAGACAGGCCTCCGAG GGAAGAAAAACCGCCGAAAGAGGAGAGACCACCGCGAGAGCGAGGAGCGT TCAATGATCGTGCAGCTGGACGTTACAAACCAGAAACGCCAACCGTAAAA ACCGCAAATCGCAATGGCTCGGATAACGTATCGTTGAAACCGAATTCCGA GATTAAGCCAGATCATGAAACAACCAATGGGAAGGACCACACTGGCAACC GACGTGGCAGCGAACGAGGCAGCAATCGTGGAGGCTCCAATCGAGCAGAG AACGGCAACGCCAATGGCAACAGACGAAACAAGCCGGCAGCAAGCTTAAC TTCGGCGAGTTCTGCAGCGAAATCGACAAATAGTGCTGGCGATGATTTCA ACGCCCGTTTGAGTAAGATAACCGAGGAAACAGCTAATCTCAAGGTGAGC AGTGCGCCAAAGCGAGAGAATCGACGTAAGCAAGGAGGACAAGCCAATCG CCTGGCGGGATCGGGCACAGAAACAACGCAGCAGCAGCAGCCAGCACAGT TGCATTCGCAGAAGCCAGAGAAGGCTCAAACCAACCAAAAGCATCACAAT CCCAGGCACAATTCGCAGGCGAACTACAGTCAATTGGCGAATGGCTACAC TTACGATCCCAGCAAGATCATGGGTTTCCAGAGCAAGGAGGCCAACGAGT TTGCCATGAACCTTCTAAAGAGCCAGGGTGTTACACTGCCCAACGAAAAA CAACAGGAGGAGGAACAGCAGGAATCGCCACCCATGTCCTTTGGCCCCGT TTCCGCTCCTGTTTCCCGTGCGCAACCTGCTCCAGTGGCTGTGCCACAGG CTGCGCCACGGGATCAGTTCGGCATGGTGCCAGGCGATGCGTGGATGTGG CAGAAGGGCGACTTGTGCATGGCCAAGTATTGGGACGATGGAAGGTATTA TGAGGCTGAGATCACGGGCGTGTCGGAGAAAACTTGCGTGGTCTTCTTTA TGGGCTATGGAAACCATGAGGAGGTATTGAAGGTCGACATCCTGCCCATC ACCGATGCCCAAAACAGGCCACTGAGCAACTCAGCGCAGCAGCAGCAACC GCATCTGCAGCAACAGCAACCGCATCTACAGCAGCAGCAACATTCACGCT ACCGCGGAGATCGTCAGACGCAGCAGCAGCAAGTCTACGTGCCGCCCCAC AAACGAGAGCATTGAGACAACATGGTAACAGCCTGTTAACAACGTATTTA AATCAATTAACATGTTTCGAATAAACAACTTTACAGAATATTAAAAAAAA AAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13472-RA | 2763 | CG13472-RA | 18..2663 | 1..2646 | 13230 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 14777229..14779349 | 175..2295 | 10575 | 99.9 | Plus |
chr3L | 24539361 | chr3L | 14779454..14779801 | 2295..2642 | 1725 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 14776929..14777020 | 1..92 | 460 | 100 | Plus |
chr3L | 24539361 | chr3L | 14777069..14777154 | 89..174 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 14787093..14789213 | 175..2295 | 10605 | 100 | Plus |
3L | 28110227 | 3L | 14789318..14789669 | 2295..2646 | 1760 | 100 | Plus |
3L | 28110227 | 3L | 14786793..14786884 | 1..92 | 460 | 100 | Plus |
3L | 28110227 | 3L | 14786933..14787018 | 89..174 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 14780193..14782313 | 175..2295 | 10605 | 100 | Plus |
3L | 28103327 | 3L | 14782418..14782769 | 2295..2646 | 1760 | 100 | Plus |
3L | 28103327 | 3L | 14779893..14779984 | 1..92 | 460 | 100 | Plus |
3L | 28103327 | 3L | 14780033..14780118 | 89..174 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6747..6859 | 2425..2532 | 226 | 72.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6830 | 2425..2533 | 210 | 72.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6928 | 2437..2559 | 201 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6846 | 2444..2572 | 198 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2468 | 2436..2532 | 195 | 69 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2416 | 2437..2531 | 186 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2857 | 2437..2534 | 169 | 68.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2434..2515 | 2453..2534 | 167 | 67.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1116 | 2437..2492 | 163 | 76.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2432 | 1868..1961 | 150 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6673..6839 | 2417..2582 | 138 | 56 | Plus |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 643..728 | 2531..2440 | 121 | 64.1 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 14776929..14777017 | 1..89 | 100 | -> | Plus |
chr3L | 14777070..14777154 | 90..174 | 100 | -> | Plus |
chr3L | 14777229..14779349 | 175..2295 | 99 | -> | Plus |
chr3L | 14779455..14779594 | 2296..2435 | 100 | == | Plus |
chr3L | 14779652..14779801 | 2493..2642 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13472-RA | 1..2511 | 55..2565 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13472-RA | 1..2511 | 55..2565 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13472-RA | 1..2511 | 55..2565 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13472-RA | 1..2511 | 55..2565 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tdrd3-RA | 1..2511 | 55..2565 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13472-RA | 1..2642 | 1..2642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13472-RA | 1..2642 | 1..2642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13472-RA | 3..2644 | 1..2642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13472-RA | 1..2642 | 1..2642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tdrd3-RA | 3..2644 | 1..2642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14786793..14786881 | 1..89 | 100 | -> | Plus |
3L | 14786934..14787018 | 90..174 | 100 | -> | Plus |
3L | 14787093..14789213 | 175..2295 | 100 | -> | Plus |
3L | 14789319..14789665 | 2296..2642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14786793..14786881 | 1..89 | 100 | -> | Plus |
3L | 14786934..14787018 | 90..174 | 100 | -> | Plus |
3L | 14787093..14789213 | 175..2295 | 100 | -> | Plus |
3L | 14789319..14789665 | 2296..2642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14786793..14786881 | 1..89 | 100 | -> | Plus |
3L | 14786934..14787018 | 90..174 | 100 | -> | Plus |
3L | 14787093..14789213 | 175..2295 | 100 | -> | Plus |
3L | 14789319..14789665 | 2296..2642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 14779893..14779981 | 1..89 | 100 | -> | Plus |
arm_3L | 14780034..14780118 | 90..174 | 100 | -> | Plus |
arm_3L | 14780193..14782313 | 175..2295 | 100 | -> | Plus |
arm_3L | 14782419..14782765 | 2296..2642 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14780193..14782313 | 175..2295 | 100 | -> | Plus |
3L | 14782419..14782765 | 2296..2642 | 100 | Plus | |
3L | 14779893..14779981 | 1..89 | 100 | -> | Plus |
3L | 14780034..14780118 | 90..174 | 100 | -> | Plus |
Translation from 0 to 2564
> RE01471.hyp NTFVIPSPELQKNRLHEKMELGKKLREVGWYLTEEGLKIVTTAVGSEDVR KIVNDALNRDLRDIGGGALPAKREDATLPGKIVLQVQRVRNIAAPKANEE SKAAPRLLQLDLSDGQNSIKALELEPVPQLNLNVAPGSKIYFKAEKLQLM QGFLLLKSSEIQLLGGRVDALYEKWDLARTMMRYARSGRPLNGTSAPPPW VAFGRKIDSNAESEMNFKSLGEGDKDKPAKENEEFNAMRTEAIAVATKAG GKKIFGGGGQNIIDHNVKKILDKGFSEEEARSALSATRNNLERALYNLKR RSEAGGVGPIESVGRPGRGDRPPREGKRGASAKDEVEAPKPAANTTLFDF LTNKLPAKETPAASNAETFAAAPTAAPTAPPTTNHFNPFKQYGSSRFSDS ESKPSAMGGGGKFADRSRFENNVSSSFAAHRGGHVGSSRGGGRNRGGGRD ERPPREERAYREDRPPREEKPPKEERPPRERGAFNDRAAGRYKPETPTVK TANRNGSDNVSLKPNSEIKPDHETTNGKDHTGNRRGSERGSNRGGSNRAE NGNANGNRRNKPAASLTSASSAAKSTNSAGDDFNARLSKITEETANLKVS SAPKRENRRKQGGQANRLAGSGTETTQQQQPAQLHSQKPEKAQTNQKHHN PRHNSQANYSQLANGYTYDPSKIMGFQSKEANEFAMNLLKSQGVTLPNEK QQEEEQQESPPMSFGPVSAPVSRAQPAPVAVPQAAPRDQFGMVPGDAWMW QKGDLCMAKYWDDGRYYEAEITGVSEKTCVVFFMGYGNHEEVLKVDILPI TDAQNRPLSNSAQQQQPHLQQQQPHLQQQQHSRYRGDRQTQQQQVYVPPH KREH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tdrd3-PA | 836 | CG13472-PA | 1..836 | 19..854 | 4363 | 100 | Plus |
Translation from 54 to 2564
> RE01471.pep MELGKKLREVGWYLTEEGLKIVTTAVGSEDVRKIVNDALNRDLRDIGGGA LPAKREDATLPGKIVLQVQRVRNIAAPKANEESKAAPRLLQLDLSDGQNS IKALELEPVPQLNLNVAPGSKIYFKAEKLQLMQGFLLLKSSEIQLLGGRV DALYEKWDLARTMMRYARSGRPLNGTSAPPPWVAFGRKIDSNAESEMNFK SLGEGDKDKPAKENEEFNAMRTEAIAVATKAGGKKIFGGGGQNIIDHNVK KILDKGFSEEEARSALSATRNNLERALYNLKRRSEAGGVGPIESVGRPGR GDRPPREGKRGASAKDEVEAPKPAANTTLFDFLTNKLPAKETPAASNAET FAAAPTAAPTAPPTTNHFNPFKQYGSSRFSDSESKPSAMGGGGKFADRSR FENNVSSSFAAHRGGHVGSSRGGGRNRGGGRDERPPREERAYREDRPPRE EKPPKEERPPRERGAFNDRAAGRYKPETPTVKTANRNGSDNVSLKPNSEI KPDHETTNGKDHTGNRRGSERGSNRGGSNRAENGNANGNRRNKPAASLTS ASSAAKSTNSAGDDFNARLSKITEETANLKVSSAPKRENRRKQGGQANRL AGSGTETTQQQQPAQLHSQKPEKAQTNQKHHNPRHNSQANYSQLANGYTY DPSKIMGFQSKEANEFAMNLLKSQGVTLPNEKQQEEEQQESPPMSFGPVS APVSRAQPAPVAVPQAAPRDQFGMVPGDAWMWQKGDLCMAKYWDDGRYYE AEITGVSEKTCVVFFMGYGNHEEVLKVDILPITDAQNRPLSNSAQQQQPH LQQQQPHLQQQQHSRYRGDRQTQQQQVYVPPHKREH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24618-PA | 850 | GF24618-PA | 1..850 | 1..836 | 2710 | 71.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15698-PA | 834 | GG15698-PA | 1..834 | 1..836 | 3448 | 86.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14628-PA | 865 | GH14628-PA | 1..865 | 1..835 | 2031 | 53.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tdrd3-PA | 836 | CG13472-PA | 1..836 | 1..836 | 4363 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11340-PA | 833 | GI11340-PA | 1..833 | 1..836 | 1877 | 51.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24576-PA | 485 | GL24576-PA | 1..397 | 1..413 | 1477 | 73.6 | Plus |
Dper\GL24569-PA | 187 | GL24569-PA | 1..187 | 656..836 | 586 | 61.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12310-PA | 856 | GA12310-PA | 1..856 | 1..836 | 2335 | 63.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25482-PA | 850 | GM25482-PA | 1..850 | 1..836 | 3492 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14503-PA | 849 | GD14503-PA | 1..849 | 1..836 | 3478 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11594-PA | 825 | GJ11594-PA | 1..825 | 1..836 | 1962 | 53.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10535-PA | 743 | GK10535-PA | 1..743 | 1..836 | 1903 | 56 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE22029-PA | 843 | GE22029-PA | 1..843 | 1..836 | 3315 | 87.2 | Plus |