Clone RE01471 Report

Search the DGRC for RE01471

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:14
Well:71
Vector:pFlc-1
Associated Gene/TranscriptTdrd3-RA
Protein status:RE01471.pep: gold
Preliminary Size:2511
Sequenced Size:2657

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13472 2001-11-29 Blastp of sequenced clone
CG13472 2002-01-01 Sim4 clustering to Release 2
CG13472 2003-01-01 Sim4 clustering to Release 3
CG13472 2008-04-29 Release 5.5 accounting
CG13472 2008-08-15 Release 5.9 accounting
CG13472 2008-12-18 5.12 accounting

Clone Sequence Records

RE01471.complete Sequence

2657 bp (2657 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069766

> RE01471.complete
AATACTTTTGTCATCCCTAGTCCGGAGTTGCAAAAAAATCGTCTTCATGA
AAAAATGGAATTAGGCAAGAAACTACGAGAAGTCGGGTGGTACCTGACAG
AGGAGGGCCTTAAAATCGTGACAACAGCCGTCGGCAGCGAGGATGTCCGG
AAAATAGTCAATGATGCACTGAATCGAGATCTGCGCGATATTGGCGGTGG
CGCACTGCCCGCGAAACGCGAAGATGCCACTTTGCCCGGTAAAATTGTGC
TGCAGGTTCAGCGTGTGCGAAATATTGCCGCTCCCAAGGCGAATGAGGAA
TCGAAGGCGGCGCCACGCCTCCTTCAGTTGGATCTGAGTGATGGGCAGAA
TTCCATAAAGGCCTTGGAGCTGGAGCCAGTTCCCCAACTGAATCTCAATG
TGGCTCCCGGAAGCAAGATCTATTTCAAGGCCGAGAAACTGCAGCTTATG
CAGGGATTCCTGCTGCTAAAGTCCAGTGAAATTCAGCTGCTCGGCGGCCG
TGTGGATGCACTCTACGAGAAATGGGATCTGGCCAGGACCATGATGAGAT
ATGCGCGCAGTGGGCGCCCCTTGAATGGGACATCAGCGCCACCCCCGTGG
GTGGCATTTGGCCGAAAAATCGATAGCAACGCCGAAAGCGAAATGAACTT
TAAGAGCCTGGGCGAGGGCGACAAGGACAAGCCGGCAAAGGAGAACGAAG
AGTTCAATGCCATGCGCACAGAGGCCATTGCCGTGGCCACCAAGGCCGGC
GGCAAGAAGATCTTTGGCGGCGGTGGCCAGAACATTATCGATCACAATGT
TAAGAAGATCCTAGACAAGGGCTTCAGCGAGGAGGAGGCCCGCAGTGCCT
TATCTGCTACCCGAAACAACTTGGAGCGCGCCCTATACAATCTAAAAAGA
CGCAGTGAAGCTGGCGGTGTGGGTCCGATCGAATCCGTGGGTCGTCCGGG
ACGCGGAGATCGTCCGCCCAGAGAGGGAAAGCGTGGAGCTAGCGCCAAGG
ACGAAGTTGAAGCACCCAAGCCGGCTGCCAACACCACGCTGTTTGATTTC
CTAACCAATAAACTGCCCGCCAAGGAAACACCGGCCGCTAGTAATGCAGA
AACCTTCGCTGCCGCTCCAACTGCCGCTCCGACTGCCCCACCCACTACCA
ATCACTTCAATCCATTTAAGCAATATGGAAGCTCGCGCTTCAGCGATTCC
GAGAGCAAACCTTCAGCTATGGGCGGAGGCGGCAAGTTTGCAGATCGTTC
TAGGTTTGAGAACAACGTATCGAGCAGCTTTGCCGCACATCGTGGTGGAC
ATGTGGGTTCGTCGCGAGGCGGTGGCCGTAACCGGGGTGGCGGCAGGGAC
GAAAGGCCACCAAGAGAGGAGCGAGCCTACAGGGAAGACAGGCCTCCGAG
GGAAGAAAAACCGCCGAAAGAGGAGAGACCACCGCGAGAGCGAGGAGCGT
TCAATGATCGTGCAGCTGGACGTTACAAACCAGAAACGCCAACCGTAAAA
ACCGCAAATCGCAATGGCTCGGATAACGTATCGTTGAAACCGAATTCCGA
GATTAAGCCAGATCATGAAACAACCAATGGGAAGGACCACACTGGCAACC
GACGTGGCAGCGAACGAGGCAGCAATCGTGGAGGCTCCAATCGAGCAGAG
AACGGCAACGCCAATGGCAACAGACGAAACAAGCCGGCAGCAAGCTTAAC
TTCGGCGAGTTCTGCAGCGAAATCGACAAATAGTGCTGGCGATGATTTCA
ACGCCCGTTTGAGTAAGATAACCGAGGAAACAGCTAATCTCAAGGTGAGC
AGTGCGCCAAAGCGAGAGAATCGACGTAAGCAAGGAGGACAAGCCAATCG
CCTGGCGGGATCGGGCACAGAAACAACGCAGCAGCAGCAGCCAGCACAGT
TGCATTCGCAGAAGCCAGAGAAGGCTCAAACCAACCAAAAGCATCACAAT
CCCAGGCACAATTCGCAGGCGAACTACAGTCAATTGGCGAATGGCTACAC
TTACGATCCCAGCAAGATCATGGGTTTCCAGAGCAAGGAGGCCAACGAGT
TTGCCATGAACCTTCTAAAGAGCCAGGGTGTTACACTGCCCAACGAAAAA
CAACAGGAGGAGGAACAGCAGGAATCGCCACCCATGTCCTTTGGCCCCGT
TTCCGCTCCTGTTTCCCGTGCGCAACCTGCTCCAGTGGCTGTGCCACAGG
CTGCGCCACGGGATCAGTTCGGCATGGTGCCAGGCGATGCGTGGATGTGG
CAGAAGGGCGACTTGTGCATGGCCAAGTATTGGGACGATGGAAGGTATTA
TGAGGCTGAGATCACGGGCGTGTCGGAGAAAACTTGCGTGGTCTTCTTTA
TGGGCTATGGAAACCATGAGGAGGTATTGAAGGTCGACATCCTGCCCATC
ACCGATGCCCAAAACAGGCCACTGAGCAACTCAGCGCAGCAGCAGCAACC
GCATCTGCAGCAACAGCAACCGCATCTACAGCAGCAGCAACATTCACGCT
ACCGCGGAGATCGTCAGACGCAGCAGCAGCAAGTCTACGTGCCGCCCCAC
AAACGAGAGCATTGAGACAACATGGTAACAGCCTGTTAACAACGTATTTA
AATCAATTAACATGTTTCGAATAAACAACTTTACAGAATATTAAAAAAAA
AAAAAAA

RE01471.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13472-RA 2763 CG13472-RA 18..2663 1..2646 13230 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:12:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 14777229..14779349 175..2295 10575 99.9 Plus
chr3L 24539361 chr3L 14779454..14779801 2295..2642 1725 99.7 Plus
chr3L 24539361 chr3L 14776929..14777020 1..92 460 100 Plus
chr3L 24539361 chr3L 14777069..14777154 89..174 430 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14787093..14789213 175..2295 10605 100 Plus
3L 28110227 3L 14789318..14789669 2295..2646 1760 100 Plus
3L 28110227 3L 14786793..14786884 1..92 460 100 Plus
3L 28110227 3L 14786933..14787018 89..174 430 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 14780193..14782313 175..2295 10605 100 Plus
3L 28103327 3L 14782418..14782769 2295..2646 1760 100 Plus
3L 28103327 3L 14779893..14779984 1..92 460 100 Plus
3L 28103327 3L 14780033..14780118 89..174 430 100 Plus
Blast to na_te.dros performed 2019-03-16 19:12:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6747..6859 2425..2532 226 72.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6830 2425..2533 210 72.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6928 2437..2559 201 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6846 2444..2572 198 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2468 2436..2532 195 69 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2322..2416 2437..2531 186 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2766..2857 2437..2534 169 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2434..2515 2453..2534 167 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1061..1116 2437..2492 163 76.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2432 1868..1961 150 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6673..6839 2417..2582 138 56 Plus
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 643..728 2531..2440 121 64.1 Minus

RE01471.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:13:23 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 14776929..14777017 1..89 100 -> Plus
chr3L 14777070..14777154 90..174 100 -> Plus
chr3L 14777229..14779349 175..2295 99 -> Plus
chr3L 14779455..14779594 2296..2435 100 == Plus
chr3L 14779652..14779801 2493..2642 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:45:41 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 1..2511 55..2565 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:38 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 1..2511 55..2565 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:14 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 1..2511 55..2565 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:48 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 1..2511 55..2565 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:02:44 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
Tdrd3-RA 1..2511 55..2565 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:53:06 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 1..2642 1..2642 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:38 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 1..2642 1..2642 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:14 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 3..2644 1..2642 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:48 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
CG13472-RA 1..2642 1..2642 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:02:44 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
Tdrd3-RA 3..2644 1..2642 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:23 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14786793..14786881 1..89 100 -> Plus
3L 14786934..14787018 90..174 100 -> Plus
3L 14787093..14789213 175..2295 100 -> Plus
3L 14789319..14789665 2296..2642 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:23 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14786793..14786881 1..89 100 -> Plus
3L 14786934..14787018 90..174 100 -> Plus
3L 14787093..14789213 175..2295 100 -> Plus
3L 14789319..14789665 2296..2642 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:23 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14786793..14786881 1..89 100 -> Plus
3L 14786934..14787018 90..174 100 -> Plus
3L 14787093..14789213 175..2295 100 -> Plus
3L 14789319..14789665 2296..2642 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:14 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14779893..14779981 1..89 100 -> Plus
arm_3L 14780034..14780118 90..174 100 -> Plus
arm_3L 14780193..14782313 175..2295 100 -> Plus
arm_3L 14782419..14782765 2296..2642 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:12 Download gff for RE01471.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14780193..14782313 175..2295 100 -> Plus
3L 14782419..14782765 2296..2642 100   Plus
3L 14779893..14779981 1..89 100 -> Plus
3L 14780034..14780118 90..174 100 -> Plus

RE01471.hyp Sequence

Translation from 0 to 2564

> RE01471.hyp
NTFVIPSPELQKNRLHEKMELGKKLREVGWYLTEEGLKIVTTAVGSEDVR
KIVNDALNRDLRDIGGGALPAKREDATLPGKIVLQVQRVRNIAAPKANEE
SKAAPRLLQLDLSDGQNSIKALELEPVPQLNLNVAPGSKIYFKAEKLQLM
QGFLLLKSSEIQLLGGRVDALYEKWDLARTMMRYARSGRPLNGTSAPPPW
VAFGRKIDSNAESEMNFKSLGEGDKDKPAKENEEFNAMRTEAIAVATKAG
GKKIFGGGGQNIIDHNVKKILDKGFSEEEARSALSATRNNLERALYNLKR
RSEAGGVGPIESVGRPGRGDRPPREGKRGASAKDEVEAPKPAANTTLFDF
LTNKLPAKETPAASNAETFAAAPTAAPTAPPTTNHFNPFKQYGSSRFSDS
ESKPSAMGGGGKFADRSRFENNVSSSFAAHRGGHVGSSRGGGRNRGGGRD
ERPPREERAYREDRPPREEKPPKEERPPRERGAFNDRAAGRYKPETPTVK
TANRNGSDNVSLKPNSEIKPDHETTNGKDHTGNRRGSERGSNRGGSNRAE
NGNANGNRRNKPAASLTSASSAAKSTNSAGDDFNARLSKITEETANLKVS
SAPKRENRRKQGGQANRLAGSGTETTQQQQPAQLHSQKPEKAQTNQKHHN
PRHNSQANYSQLANGYTYDPSKIMGFQSKEANEFAMNLLKSQGVTLPNEK
QQEEEQQESPPMSFGPVSAPVSRAQPAPVAVPQAAPRDQFGMVPGDAWMW
QKGDLCMAKYWDDGRYYEAEITGVSEKTCVVFFMGYGNHEEVLKVDILPI
TDAQNRPLSNSAQQQQPHLQQQQPHLQQQQHSRYRGDRQTQQQQVYVPPH
KREH*

RE01471.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
Tdrd3-PA 836 CG13472-PA 1..836 19..854 4363 100 Plus

RE01471.pep Sequence

Translation from 54 to 2564

> RE01471.pep
MELGKKLREVGWYLTEEGLKIVTTAVGSEDVRKIVNDALNRDLRDIGGGA
LPAKREDATLPGKIVLQVQRVRNIAAPKANEESKAAPRLLQLDLSDGQNS
IKALELEPVPQLNLNVAPGSKIYFKAEKLQLMQGFLLLKSSEIQLLGGRV
DALYEKWDLARTMMRYARSGRPLNGTSAPPPWVAFGRKIDSNAESEMNFK
SLGEGDKDKPAKENEEFNAMRTEAIAVATKAGGKKIFGGGGQNIIDHNVK
KILDKGFSEEEARSALSATRNNLERALYNLKRRSEAGGVGPIESVGRPGR
GDRPPREGKRGASAKDEVEAPKPAANTTLFDFLTNKLPAKETPAASNAET
FAAAPTAAPTAPPTTNHFNPFKQYGSSRFSDSESKPSAMGGGGKFADRSR
FENNVSSSFAAHRGGHVGSSRGGGRNRGGGRDERPPREERAYREDRPPRE
EKPPKEERPPRERGAFNDRAAGRYKPETPTVKTANRNGSDNVSLKPNSEI
KPDHETTNGKDHTGNRRGSERGSNRGGSNRAENGNANGNRRNKPAASLTS
ASSAAKSTNSAGDDFNARLSKITEETANLKVSSAPKRENRRKQGGQANRL
AGSGTETTQQQQPAQLHSQKPEKAQTNQKHHNPRHNSQANYSQLANGYTY
DPSKIMGFQSKEANEFAMNLLKSQGVTLPNEKQQEEEQQESPPMSFGPVS
APVSRAQPAPVAVPQAAPRDQFGMVPGDAWMWQKGDLCMAKYWDDGRYYE
AEITGVSEKTCVVFFMGYGNHEEVLKVDILPITDAQNRPLSNSAQQQQPH
LQQQQPHLQQQQHSRYRGDRQTQQQQVYVPPHKREH*

RE01471.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24618-PA 850 GF24618-PA 1..850 1..836 2710 71.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15698-PA 834 GG15698-PA 1..834 1..836 3448 86.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14628-PA 865 GH14628-PA 1..865 1..835 2031 53.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
Tdrd3-PA 836 CG13472-PA 1..836 1..836 4363 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:18:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11340-PA 833 GI11340-PA 1..833 1..836 1877 51.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24576-PA 485 GL24576-PA 1..397 1..413 1477 73.6 Plus
Dper\GL24569-PA 187 GL24569-PA 1..187 656..836 586 61.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12310-PA 856 GA12310-PA 1..856 1..836 2335 63.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25482-PA 850 GM25482-PA 1..850 1..836 3492 92 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:18:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14503-PA 849 GD14503-PA 1..849 1..836 3478 91.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11594-PA 825 GJ11594-PA 1..825 1..836 1962 53.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:18:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10535-PA 743 GK10535-PA 1..743 1..836 1903 56 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22029-PA 843 GE22029-PA 1..843 1..836 3315 87.2 Plus