Clone RE01508 Report

Gene	Date	Evidence
l(3)82Fd-RI	2009-06-22	Replacement based on scoring

Clone Sequence Records

RE01508.complete Sequence

2018 bp assembled on 2009-10-14

GenBank Submission: BT100098.1

> RE01508.complete
AGTTTTCGCAACACTTCCAAGCCGCACAGTCGCCGTCGCGTCCCATTCTG
AATATTGAAGATTCAAAATACCGACTTATAGACCGCAACGCGTGTGATCT
AGAAGATAGAAAAGGTCTAGAAGTTCGCCGAAAATGTGACTTTAGTTCGA
CCGAAAAATAGAGCAATATTTGATCAACTGCACTTGGGCAAATAGCTTTC
GGGTTTTTCCGCGCAGAGCAGCGTGTCCAAAATTAGATACGGTGAAAAAA
AGAAGAAGAAAGAGTGCGAGGAAAGCGGCTTGCTCTTCTCTCGATCTTCG
GCTCTCCACGATTCTGCGATTCTTCGATTCTTCTTGGGCCGCCGGCTAAA
AACGCTGCCAAAATGAGCGCCAAAACAATGAAAATCTCAAAAATAGCCAA
ATACATCAAGAAAAGGGTGCTGTCAATGAGCACAGATGAATATCGCAAGA
CCTCGCTCTTTGCCACCGGTTCCTTCGACCTGGACTTCCCCATACCAGAC
CTGATCGGCAAGACAGAAATCCTTACAGAGGAGCATCGCGAGAAGCTCTG
TTCACATCTGCCGGCTAGAGCCGAGGGATACTCCTGGTCCCTGATCTTCA
GCACCTCACAACATGGTTTCGCACTGAACTCCCTGTACCGCAAAATGGCG
CGTCTGGAGAGTCCAGTTCTGATTGTCATTGAGGATACGGAGCACAACGT
ATTTGGTGCCCTCACCTCCTGCTCACTGCATGTGTCGGATCACTTTTACG
GCACCGGTGAGTCCCTGCTCTACAAGTTTAACCCCAGCTTCAAGGTGTTC
CATTGGACTGGCGAGAATATGTACTTCATCAAAGGAAACATGGAGAGCCT
TTCGATTGGCGCTGGAGACGGTCGTTTTGGCCTGTGGCTGGATGGTGATC
TGAACCAGGGACGATCGCAACAGTGCAGCACATACGGCAATGAGCCTCTG
GCGCCACAAGAAGACTTTGTTATCAAAACACTCGAATGCTGGGCATTTGT
TTAAGTGAATTTCTGTTGTCGACAACAAACATATTTAAGGATGGGAGCGA
GGGCCTCCTGCCGACCTATCTATTTAATTAACTATATGTACTTGTACTAA
AAACCAGCAACCTGAGAAAGATGTCAAAAGCTGGTGTGCGTCCAAGGATC
ATCCCTTCGGAACGGTCCACACAGCCCGAACCCCGAAACACTTGAATACA
CGAACACCACCACATGAAGATGGTTTTGAAGGGATCTGATCTGAAGAAAA
ATGCTTGTGAAAACTCCGTTCTCTGAAGCAACTGCGAGTTAGCTATGCGT
TGGAACGTATTAATTATTTAGTTTTTATATCATATATTATTAAACAAGAG
CAACTAAATTATGTGTTAGACTTAAACAAAACAAAACAGAATATGAGAAA
ACCCAAGAAACAGACTAGCGACACAAAAACTTAAGCGAAAAGAAATGAGG
ATAACATTTGAGGGCATCACACATCTCCATGAAAAACATGGCACACGCAT
ACACCCACATACGCCTACATTAAAAAACACACATTATGTTTAGTTCTTAA
TACCGAAAATTATAAACACCAAATTGTGAGAAGAGACATATTGAAAATAG
GCAGATTTTTATCATTTATCGTGTCCAGTTCTCTGGATTGATTTCAGTTT
GAATTTAGTTTCGATTGTTTGAGTTACTAGAGTTATTTGAGAACATTGTG
AAAAGCGAAGCGAGCTGAGATGAGAAAAATAAAAAGAATGTCGATATAAT
TTATAGTGCAAAAGTGCTGATTGCAAGTAAAACTAAAGCGAAGATAACTT
TAAACGATTTGACTTTTATGTATATGTAAAGAAGGAGCCGCGAAGAGCTG
AGAGCGAGCGTTTTATTTTTAGTTTTACACGATATACATACATACATATA
TTTAATTACGATTATTTAATGCTAATGATGTTGACTTTTATGCAATTATA
CTAAAACAAAAACAGAAACAACACCAGAATGAAATACACAATATTATACA
ACAAAAAAAAAAAAAAAA

RE01508.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:55:05

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
l(3)82Fd.h	4835	l(3)82Fd.h	41..2048	1..2007	9970	99.8	Plus
l(3)82Fd-RI	2056	l(3)82Fd-RI	41..2048	1..2007	9970	99.8	Plus
l(3)82Fd.y	2412	l(3)82Fd.y	41..2048	1..2007	9970	99.8	Plus

Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:59:14

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
chr3R	27901430	chr3R	1098612..1099746	2002..869	5625	99.9	Minus
chr3R	27901430	chr3R	1112565..1112982	418..1	2075	99.8	Minus
chr3R	27901430	chr3R	1099813..1099982	868..699	850	100	Minus
chr3R	27901430	chr3R	1100396..1100559	701..538	820	100	Minus
chr3R	27901430	chr3R	1100630..1100752	538..416	615	100	Minus

Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:43 has no hits.

Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:59:12

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
3R	32079331	3R	5272943..5274082	2007..869	5635	99.8	Minus
3R	32079331	3R	5286900..5287317	418..1	2075	99.8	Minus
3R	32079331	3R	5274149..5274318	868..699	850	100	Minus
3R	32079331	3R	5274732..5274895	701..538	820	100	Minus
3R	32079331	3R	5274966..5275088	538..416	615	100	Minus

Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:51:26

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
3R	31820162	3R	5013774..5014913	2007..869	5645	99.8	Minus
3R	31820162	3R	5027731..5028148	418..1	2075	99.7	Minus
3R	31820162	3R	5014980..5015149	868..699	850	100	Minus
3R	31820162	3R	5015563..5015726	701..538	820	100	Minus
3R	31820162	3R	5015797..5015919	538..416	615	100	Minus

Blast to na_te.dros performed 2019-03-15 14:59:12

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
17.6	7439	17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2).	6340..6475	1304..1440	123	58.3	Plus
412	7567	412 412 7567bp	6952..6999	1952..2000	116	73.5	Plus

RE01508.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:59:56 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
chr3R	1098612..1099746	869..2002	99	<-	Minus
chr3R	1099813..1099982	699..868	100	<-	Minus
chr3R	1100399..1100558	539..698	100	<-	Minus
chr3R	1100630..1100751	417..538	100	<-	Minus
chr3R	1112567..1112982	1..416	99		Minus

Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:15:47 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
l(3)82Fd-RI	1..642	363..1004	100		Plus

Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:44:53 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
l(3)82Fd-RI	1..642	363..1004	100		Plus

Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:56:26 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
mtd-RI	1..642	363..1004	100		Plus

Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:59 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
mtd-RI	1..642	363..1004	100		Plus

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:15:47 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
l(3)82Fd-RI	1..1996	8..2002	99		Plus

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:44:53 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
l(3)82Fd-RI	1..1996	8..2002	99		Plus

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:56:26 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
mtd-RI	4..2006	1..2002	99		Plus

Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:59 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
mtd-RI	4..2006	1..2002	99		Plus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:59:56 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3R	5272948..5274082	869..2002	99	<-	Minus
3R	5274149..5274318	699..868	100	<-	Minus
3R	5274735..5274894	539..698	100	<-	Minus
3R	5274966..5275087	417..538	100	<-	Minus
3R	5286902..5287317	1..416	99		Minus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:59:56 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3R	5272948..5274082	869..2002	99	<-	Minus
3R	5274149..5274318	699..868	100	<-	Minus
3R	5274735..5274894	539..698	100	<-	Minus
3R	5274966..5275087	417..538	100	<-	Minus
3R	5286902..5287317	1..416	99		Minus

Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:59:56 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3R	5272948..5274082	869..2002	99	<-	Minus
3R	5274149..5274318	699..868	100	<-	Minus
3R	5274735..5274894	539..698	100	<-	Minus
3R	5274966..5275087	417..538	100	<-	Minus
3R	5286902..5287317	1..416	99		Minus

Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:56:26 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
arm_3R	1098670..1099804	869..2002	99	<-	Minus
arm_3R	1099871..1100040	699..868	100	<-	Minus
arm_3R	1100457..1100616	539..698	100	<-	Minus
arm_3R	1100688..1100809	417..538	100	<-	Minus
arm_3R	1112624..1113039	1..416	99		Minus

Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:25:27 Download gff for RE01508.complete

Subject	Subject Range	Query Range	Percent	Splice	Strand
3R	5015797..5015918	417..538	100	<-	Minus
3R	5015566..5015725	539..698	100	<-	Minus
3R	5027733..5028148	1..416	99		Minus
3R	5013779..5014913	869..2002	99	<-	Minus
3R	5014980..5015149	699..868	100	<-	Minus

RE01508.hyp Sequence

Translation from 362 to 1003

> RE01508.hyp
MSAKTMKISKIAKYIKKRVLSMSTDEYRKTSLFATGSFDLDFPIPDLIGK
TEILTEEHREKLCSHLPARAEGYSWSLIFSTSQHGFALNSLYRKMARLES
PVLIVIEDTEHNVFGALTSCSLHVSDHFYGTGESLLYKFNPSFKVFHWTG
ENMYFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQQCSTYGNEPLAPQE
DFVIKTLECWAFV*

RE01508.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:47:29

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
mtd-PI	213	CG32464-PI	1..213	1..213	1128	100	Plus
mtd-PA	210	CG32464-PA	12..210	15..213	1046	98	Plus
mtd-PC	267	CG32464-PC	73..267	19..213	1043	100	Plus
mtd-PQ	192	CG32464-PQ	1..192	22..213	1031	100	Plus
mtd-PH	192	CG32464-PH	1..192	22..213	1031	100	Plus

RE01508.pep Sequence

Translation from 362 to 1003

> RE01508.pep
MSAKTMKISKIAKYIKKRVLSMSTDEYRKTSLFATGSFDLDFPIPDLIGK
TEILTEEHREKLCSHLPARAEGYSWSLIFSTSQHGFALNSLYRKMARLES
PVLIVIEDTEHNVFGALTSCSLHVSDHFYGTGESLLYKFNPSFKVFHWTG
ENMYFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQQCSTYGNEPLAPQE
DFVIKTLECWAFV*

RE01508.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:39:22

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dana\GF16064-PA	267	GF16064-PA	69..267	15..213	1049	97.5	Plus
Dana\GF24274-PA	592	GF24274-PA	423..590	62..213	223	30.6	Plus
Dana\GF14028-PA	450	GF14028-PA	234..398	53..211	168	29.3	Plus

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:39:22

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dere\GG11111-PA	192	GG11111-PA	1..192	22..213	1039	100	Plus
Dere\GG21540-PA	592	GG21540-PA	423..590	62..213	223	30.6	Plus
Dere\GG23536-PA	447	GG23536-PA	234..398	53..211	172	29.3	Plus

Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:39:23

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dgri\GH22698-PA	266	GH22698-PA	69..266	15..213	998	93	Plus
Dgri\GH11143-PA	621	GH11143-PA	452..619	62..213	221	30.6	Plus
Dgri\GH13150-PA	448	GH13150-PA	234..398	53..211	185	30.5	Plus

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:58

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
mtd-PI	213	CG32464-PI	1..213	1..213	1128	100	Plus
mtd-PK	1055	CG32464-PK	837..1055	3..213	1052	92.2	Plus
mtd-PX	1127	CG32464-PX	909..1127	3..213	1052	92.2	Plus
mtd-PW	1180	CG32464-PW	962..1180	3..213	1052	92.2	Plus
mtd-PV	1344	CG32464-PV	1126..1344	3..213	1052	92.2	Plus
mtd-PA	210	CG32464-PA	12..210	15..213	1046	98	Plus
mtd-PC	267	CG32464-PC	73..267	19..213	1043	100	Plus
mtd-PR	789	CG32464-PR	595..789	19..213	1043	100	Plus
mtd-PF	869	CG32464-PF	675..869	19..213	1043	100	Plus
mtd-PAA	871	CG32464-PAA	677..871	19..213	1043	100	Plus
mtd-PM	1012	CG32464-PM	818..1012	19..213	1043	100	Plus
mtd-PO	1025	CG32464-PO	831..1025	19..213	1043	100	Plus
mtd-PG	1033	CG32464-PG	839..1033	19..213	1043	100	Plus
mtd-PT	1106	CG32464-PT	912..1106	19..213	1043	100	Plus
mtd-PS	1106	CG32464-PS	912..1106	19..213	1043	100	Plus
mtd-PY	1158	CG32464-PY	964..1158	19..213	1043	100	Plus
mtd-PU	1246	CG32464-PU	1052..1246	19..213	1043	100	Plus
mtd-PJ	1270	CG32464-PJ	1076..1270	19..213	1043	100	Plus
mtd-PB	1270	CG32464-PB	1076..1270	19..213	1043	100	Plus
mtd-PN	1270	CG32464-PN	1076..1270	19..213	1043	100	Plus
mtd-PP	1314	CG32464-PP	1120..1314	19..213	1043	100	Plus
mtd-PQ	192	CG32464-PQ	1..192	22..213	1031	100	Plus
mtd-PH	192	CG32464-PH	1..192	22..213	1031	100	Plus
sky-PK	597	CG9339-PK	410..595	42..213	226	30	Plus
sky-PL	606	CG9339-PL	419..604	42..213	226	30	Plus
sky-PJ	607	CG9339-PJ	420..605	42..213	226	30	Plus
sky-PG	568	CG9339-PG	399..566	62..213	219	30.6	Plus
sky-PD	568	CG9339-PD	399..566	62..213	219	30.6	Plus
sky-PE	568	CG9339-PE	399..566	62..213	219	30.6	Plus
sky-PI	573	CG9339-PI	404..571	62..213	219	30.6	Plus
sky-PF	573	CG9339-PF	404..571	62..213	219	30.6	Plus
sky-PA	587	CG9339-PA	418..585	62..213	219	30.6	Plus
sky-PH	587	CG9339-PH	418..585	62..213	219	30.6	Plus
sky-PB	587	CG9339-PB	418..585	62..213	219	30.6	Plus
sky-PC	592	CG9339-PC	423..590	62..213	219	30.6	Plus
CG5149-PA	448	CG5149-PA	249..398	69..211	168	29.1	Plus

Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:39:23

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dmoj\GI10212-PA	267	GI10212-PA	69..267	15..213	1030	95.5	Plus
Dmoj\GI17849-PA	621	GI17849-PA	452..619	62..213	220	30.6	Plus
Dmoj\GI17790-PA	449	GI17790-PA	234..398	53..211	188	31.1	Plus

Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:39:24

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dper\GL22193-PA	210	GL22193-PA	12..210	15..213	1044	96.5	Plus
Dper\GL19586-PA	621	GL19586-PA	452..619	62..213	221	30.6	Plus
Dper\GL19228-PA	450	GL19228-PA	253..398	73..211	177	30.6	Plus

Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:39:24

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dpse\GA27407-PA	210	GA27407-PA	12..210	15..213	1044	96.5	Plus
Dpse\GA26020-PA	621	GA26020-PA	452..619	62..213	221	30.6	Plus
Dpse\GA18692-PA	450	GA18692-PA	253..398	73..211	177	30.6	Plus

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:39:25

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dsec\GM10650-PA	192	GM10650-PA	1..192	22..213	1039	100	Plus
Dsec\GM23295-PA	592	GM23295-PA	423..590	62..213	223	30.6	Plus
Dsec\GM23297-PA	178	GM23297-PA	4..176	42..213	193	28.7	Plus
Dsec\GM13572-PA	448	GM13572-PA	243..398	62..211	168	29.1	Plus

Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:39:25

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dsim\GD19632-PA	267	GD19632-PA	69..267	15..213	1053	98	Plus
Dsim\GD21669-PA	350	GD21669-PA	181..348	62..213	222	30.6	Plus
Dsim\GD22498-PA	448	GD22498-PA	243..398	62..211	167	29.1	Plus

Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:39:26

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dvir\GJ11014-PA	267	GJ11014-PA	69..267	15..213	1047	97	Plus
Dvir\GJ17344-PA	621	GJ17344-PA	452..619	62..213	222	30.6	Plus
Dvir\GJ17615-PA	448	GJ17615-PA	234..398	53..211	181	31.1	Plus

Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:39:27

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dwil\GK14285-PA	268	GK14285-PA	70..268	15..213	1037	96	Plus
Dwil\GK14678-PA	592	GK14678-PA	423..590	62..213	222	30.6	Plus
Dwil\GK24727-PA	450	GK24727-PA	214..399	39..211	162	27.7	Plus

Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:39:27

Subject	Length	Description	Subject Range	Query Range	Score	Percent	Strand
Dyak\GE25299-PA	192	GE25299-PA	1..192	22..213	1039	100	Plus
Dyak\GE13017-PA	592	GE13017-PA	423..590	62..213	223	30.6	Plus
Dyak\GE18362-PA	448	GE18362-PA	243..398	62..211	170	29.7	Plus

Library:	RE
Tissue Source:	Drosophila melanogaster embryo
Created by:	Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:	2000-10-23
Comments:	Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:	15
Well:	8
Vector:	pFlc-1
Associated Gene/Transcript	mtd-RI
Protein status:	RE01508.pep: gold
Sequenced Size:	2018

Clone RE01508 Report

Clone and Library Details

Associated Genes

Clone Sequence Records

RE01508.complete Sequence

RE01508.complete Blast Records

RE01508.complete Sim4 Records

RE01508.hyp Sequence

RE01508.hyp Blast Records

RE01508.pep Sequence

RE01508.pep Blast Records