Clone RE01528 Report

Search the DGRC for RE01528

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:15
Well:28
Vector:pFlc-1
Associated Gene/TranscriptCG4563-RA
Protein status:RE01528.pep: gold
Preliminary Size:1614
Sequenced Size:1775

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4563 2002-01-01 Sim4 clustering to Release 2
CG4563 2002-05-17 Blastp of sequenced clone
CG4563 2003-01-01 Sim4 clustering to Release 3
CG4563 2008-04-29 Release 5.5 accounting
CG4563 2008-08-15 Release 5.9 accounting
CG4563 2008-12-18 5.12 accounting

Clone Sequence Records

RE01528.complete Sequence

1775 bp (1775 high quality bases) assembled on 2002-05-17

GenBank Submission: AY119099

> RE01528.complete
ACTCAGTAGAGATTTAGAATTGGACTAGCAAAATGCCGACAAAGGCGGTT
TTCCCCACCTTCTTCAACAAGGAGACCCAGGTCTGGAGTGGCCCGCCACG
GCCCACGGTCTACGACCACAACACCTCGGTCGGTCAGATCGTGTTCAACT
CCCTGAGGTGCTGGCCCACCAATGTGATTCAGATCACCGACGACGACGGC
ACCGTGCTGACCAACGCCGACATGCTGGCCTACGCCACCCGGATTGCCCT
ATTCTTTAAGAGCGAGGGCTTGACCCAGGAGGACCGCGTCGGGATCATCG
CCAACTCGAGCACCTTCGTGATCCCCGTGGCCACCGCCTGCTTCTTCCAG
GCCACGCCCTTCCACGCCGTCAACTACTCCAGGGAGCCGGCCATCGTACA
GGGTCTCTACTCGGTGACCAAACCCAAGATCATGTTCATCGACGGTCCGG
ACTACGACCGCATCAAGGAGATCACCAAGGAGTGGTCTCCCAAGCTGATC
ACGCTCACGGGTAAAGTGGAGGGCGTTACTAGCATCGAGGACCTCGTAAA
GCCCCATCCCGCCGAGAAGATCTATGTACCTGCTTCCCTGGCCACTGGTG
GCGACCAGATCGCCGTGGTCCTGTGCTCCTCCGGCACTGCTGGCTTGCCC
AAGGCAGTTGCCCTCTCCCACCGCCACATTGCATCCACCAACTCGCTGTG
CATCAGTACCGATGTGCTGTACACCAGTGCCACCATCGACTGGATGACCG
GATTCTCGATTACCGTAATGAATCTCACATGTGGCTTCACTCGCATCATA
TCCAGGAGGACATTTAGCGCCGAGACGGCTCTCTACCTGGTCAGCAAGTA
CAAGGTCACCTGCCTGGCAATGGCGCCATGGCAGGCCTACGAGCTCTTCA
CCAGTCCACTGGCCACCAGCGAGCAACTGGAGTCCCTGAAGATAGCCTTC
GTGATTGGAGGATGGATATCCCTGGCACTACTGCGGCGGGCCCAGGAGCT
GCTGCCCAAGACCTACGTGATGTTCTCGTACGGAACCACGGAGACGGGAG
TGGTGACCATCAACATCGACCACAGTCTGGAGTGCTCTGTAGGCAGACTG
GCGCCCGGCATGAGGATCAAGATCCAAGGCGAGGATGGCCAGCAGCTGGG
CGTGAATCAGACGGGCGAGGTGCTCATCGACATCGGCCTGAAGTGGGAGG
GCTACCTCTCGAACCCGGAGGACACGGCCACCACCCTCCAGGATGGATGG
ATCAACCTGGGCGACCTGGGCTACTTCGACGAGGACAACAACCTGTACTT
GGTGGACCGCAAGAAGGACCTGCTGAAGTACAAGTCCAAGCACTACTGGC
CCAACGAGATTGAGCAGATCATCGCCGAGCTCCCGGAGGTGGAGCACGTG
TGCGTGGTAGGCGTGCGGGATGCGAGATACGGTGACGCCGCCGGAGCCCT
GATCATCAAGAAGGAGGGCGCCGAGATCGCCGACCAGAAGGTCATCGACC
ACGTGGCCCAGCGGGTGGTGGTGGACTACAAGCAGCTGAATGCCGGAGTC
ATCTTCGTGGACAAGTTCCCCAAGAACGCCAACGGCAAGGTCATGAGGAG
TTTGGCACGCGAGGTGTTCGAGAAAACCAAGCCCATTACCTTCTAACACC
TACAATCACTATGTACTTTTAAAATTGAGCTACCTGGTTTAATGTGAGGA
CAAAATTAAGTTCTTGTTGCTTGTTGTTAATTCGTGATAATTAAAACTTA
CATTTGATAGATTAAAAAAAAAAAA

RE01528.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4563-RA 1882 CG4563-RA 12..1775 1..1764 8820 100 Plus
CG4830-RA 1903 CG4830-RA 1285..1374 1240..1329 195 81.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20336997..20338065 1763..695 5330 99.9 Minus
chr2R 21145070 chr2R 20338307..20338703 577..181 1985 100 Minus
chr2R 21145070 chr2R 20338769..20338950 182..1 910 100 Minus
chr2R 21145070 chr2R 20338123..20338240 695..578 590 100 Minus
chr3R 27901430 chr3R 8033983..8034149 1406..1240 235 76 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24451083..24452152 1764..695 5350 100 Minus
2R 25286936 2R 24452394..24452790 577..181 1985 100 Minus
2R 25286936 2R 24452856..24453037 182..1 910 100 Minus
2R 25286936 2R 24452210..24452327 695..578 590 100 Minus
3R 32079331 3R 12208597..12208763 1406..1240 220 75.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24452282..24453351 1764..695 5350 100 Minus
2R 25260384 2R 24453593..24453989 577..181 1985 100 Minus
2R 25260384 2R 24454055..24454236 182..1 910 100 Minus
2R 25260384 2R 24453409..24453526 695..578 590 100 Minus
3R 31820162 3R 11949505..11949594 1329..1240 195 81.1 Minus
Blast to na_te.dros performed 2019-03-15 20:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 3289..3346 1724..1670 120 72.4 Minus

RE01528.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:05:23 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20336997..20338065 695..1763 99 <- Minus
chr2R 20338124..20338240 578..694 100 <- Minus
chr2R 20338307..20338701 183..577 100 <- Minus
chr2R 20338769..20338950 1..182 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:45:47 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4563-RA 1..1614 33..1646 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:36 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4563-RA 1..1614 33..1646 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:06:13 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4563-RA 1..1614 33..1646 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:41:08 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4563-RA 1..1614 33..1646 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:55 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4563-RA 1..1614 33..1646 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:25:16 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4563-RA 1..1763 1..1763 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:36 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4563-RA 1..1763 1..1763 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:13 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4563-RA 4..1766 1..1763 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:41:08 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4563-RA 1..1763 1..1763 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:55 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4563-RA 4..1766 1..1763 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:23 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24451084..24452152 695..1763 100 <- Minus
2R 24452211..24452327 578..694 100 <- Minus
2R 24452394..24452788 183..577 100 <- Minus
2R 24452856..24453037 1..182 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:23 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24451084..24452152 695..1763 100 <- Minus
2R 24452211..24452327 578..694 100 <- Minus
2R 24452394..24452788 183..577 100 <- Minus
2R 24452856..24453037 1..182 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:23 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24451084..24452152 695..1763 100 <- Minus
2R 24452211..24452327 578..694 100 <- Minus
2R 24452394..24452788 183..577 100 <- Minus
2R 24452856..24453037 1..182 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:13 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20338607..20339675 695..1763 100 <- Minus
arm_2R 20339734..20339850 578..694 100 <- Minus
arm_2R 20339917..20340311 183..577 100 <- Minus
arm_2R 20340379..20340560 1..182 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:13:26 Download gff for RE01528.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24452301..24453369 695..1763 100 <- Minus
2R 24453428..24453544 578..694 100 <- Minus
2R 24453611..24454005 183..577 100 <- Minus
2R 24454073..24454254 1..182 100   Minus

RE01528.pep Sequence

Translation from 32 to 1645

> RE01528.pep
MPTKAVFPTFFNKETQVWSGPPRPTVYDHNTSVGQIVFNSLRCWPTNVIQ
ITDDDGTVLTNADMLAYATRIALFFKSEGLTQEDRVGIIANSSTFVIPVA
TACFFQATPFHAVNYSREPAIVQGLYSVTKPKIMFIDGPDYDRIKEITKE
WSPKLITLTGKVEGVTSIEDLVKPHPAEKIYVPASLATGGDQIAVVLCSS
GTAGLPKAVALSHRHIASTNSLCISTDVLYTSATIDWMTGFSITVMNLTC
GFTRIISRRTFSAETALYLVSKYKVTCLAMAPWQAYELFTSPLATSEQLE
SLKIAFVIGGWISLALLRRAQELLPKTYVMFSYGTTETGVVTINIDHSLE
CSVGRLAPGMRIKIQGEDGQQLGVNQTGEVLIDIGLKWEGYLSNPEDTAT
TLQDGWINLGDLGYFDEDNNLYLVDRKKDLLKYKSKHYWPNEIEQIIAEL
PEVEHVCVVGVRDARYGDAAGALIIKKEGAEIADQKVIDHVAQRVVVDYK
QLNAGVIFVDKFPKNANGKVMRSLAREVFEKTKPITF*

RE01528.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11249-PA 538 GF11249-PA 1..535 1..535 2448 82.2 Plus
Dana\GF12064-PA 534 GF12064-PA 2..526 5..529 1264 45.5 Plus
Dana\GF12065-PA 536 GF12065-PA 4..528 7..529 1230 44.7 Plus
Dana\GF12067-PA 535 GF12067-PA 5..527 9..529 1179 43.4 Plus
Dana\GF12066-PA 535 GF12066-PA 14..531 17..533 1150 43.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19929-PA 537 GG19929-PA 1..537 1..537 2789 95.7 Plus
Dere\GG22583-PA 535 GG22583-PA 2..527 5..529 1294 47.8 Plus
Dere\GG22584-PA 535 GG22584-PA 4..527 7..529 1204 42.6 Plus
Dere\GG17154-PA 534 GG17154-PA 4..527 7..529 1144 41.8 Plus
Dere\GG23505-PA 539 GG23505-PA 6..525 9..527 1031 39.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20894-PA 534 GH20894-PA 1..532 1..532 1686 58.3 Plus
Dgri\GH20051-PA 537 GH20051-PA 2..531 5..533 1330 46.8 Plus
Dgri\GH21197-PA 532 GH21197-PA 2..527 5..529 1311 45.7 Plus
Dgri\GH21195-PA 467 GH21195-PA 2..463 5..465 1095 44.3 Plus
Dgri\GH15849-PA 540 GH15849-PA 7..526 9..527 1038 39.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG4563-PA 537 CG4563-PA 1..537 1..537 2786 100 Plus
CG8834-PA 535 CG8834-PA 2..527 5..529 1257 46.5 Plus
CG4830-PA 534 CG4830-PA 5..527 8..529 1140 42.3 Plus
CG11453-PA 539 CG11453-PA 6..525 9..527 1048 39.9 Plus
CG11407-PA 538 CG11407-PA 7..534 9..533 924 36.4 Plus
CG11659-PA 546 CG11659-PA 9..523 11..522 920 37.2 Plus
CG6300-PA 537 CG6300-PA 9..530 11..529 917 36.9 Plus
CG11391-PA 542 CG11391-PA 10..535 9..529 903 38.1 Plus
CG5568-PA 545 CG5568-PA 17..538 11..529 849 34.3 Plus
CG18586-PB 545 CG18586-PB 17..540 11..531 844 34.3 Plus
CG18586-PC 536 CG18586-PC 17..531 11..531 832 34.5 Plus
CG17999-PA 545 CG17999-PA 7..530 11..522 639 30.2 Plus
CG9993-PA 543 CG9993-PA 4..529 9..522 629 30.2 Plus
CG6178-PA 544 CG6178-PA 11..541 17..533 507 26.9 Plus
pdgy-PC 597 CG9009-PC 215..595 163..529 371 27.5 Plus
pdgy-PB 597 CG9009-PB 215..595 163..529 371 27.5 Plus
pdgy-PD 597 CG9009-PD 215..595 163..529 371 27.5 Plus
pdgy-PA 597 CG9009-PA 215..595 163..529 371 27.5 Plus
CG12512-PA 593 CG12512-PA 238..582 199..530 242 26.1 Plus
hll-PA 681 CG4500-PA 361..542 266..460 183 31.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:33:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18712-PA 540 GI18712-PA 1..532 1..530 1746 57.9 Plus
Dmoj\GI18713-PA 540 GI18713-PA 1..532 1..530 1744 57.3 Plus
Dmoj\GI18904-PA 534 GI18904-PA 1..530 1..530 1737 59.7 Plus
Dmoj\GI20482-PA 532 GI20482-PA 2..527 5..529 1297 46.9 Plus
Dmoj\GI20460-PA 537 GI20460-PA 2..531 5..533 1284 46 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10440-PA 535 GL10440-PA 2..527 5..529 1277 46.3 Plus
Dper\GL10442-PA 498 GL10442-PA 1..490 41..529 1143 45.4 Plus
Dper\GL21570-PA 533 GL21570-PA 2..527 5..529 1138 41.8 Plus
Dper\GL12674-PA 523 GL12674-PA 6..509 9..527 998 38 Plus
Dper\GL20432-PA 245 GL20432-PA 1..221 1..221 895 71.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:33:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18261-PA 534 GA18261-PA 1..531 1..531 2202 73.8 Plus
Dpse\GA21356-PA 535 GA21356-PA 2..527 5..529 1278 46.5 Plus
Dpse\GA24368-PA 498 GA24368-PA 1..490 41..529 1144 45.2 Plus
Dpse\GA18463-PA 533 GA18463-PA 2..527 5..529 1139 41.8 Plus
Dpse\GA27586-PA 539 GA27586-PA 6..525 9..527 1066 39.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11829-PA 537 GM11829-PA 1..537 1..537 2816 97.8 Plus
Dsec\GM20363-PA 535 GM20363-PA 2..527 5..529 1267 46.1 Plus
Dsec\GM20364-PA 535 GM20364-PA 4..531 7..533 1208 42.6 Plus
Dsec\GM26036-PA 534 GM26036-PA 4..527 7..529 1163 42.5 Plus
Dsec\GM20876-PA 539 GM20876-PA 6..525 9..527 1069 39.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24951-PA 537 GD24951-PA 1..537 1..537 2840 98.5 Plus
Dsim\GD25843-PA 535 GD25843-PA 2..527 5..529 1271 46.3 Plus
Dsim\GD25845-PA 535 GD25845-PA 4..531 7..533 1232 43.9 Plus
Dsim\GD25844-PA 534 GD25844-PA 4..531 7..533 1230 43.6 Plus
Dsim\GD19314-PA 539 GD19314-PA 6..525 9..527 1071 39.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21731-PA 540 GJ21731-PA 1..536 1..534 1813 59.3 Plus
Dvir\GJ20728-PA 534 GJ20728-PA 1..530 1..530 1798 61.1 Plus
Dvir\GJ22310-PA 538 GJ22310-PA 2..530 5..532 1312 46.3 Plus
Dvir\GJ22332-PA 532 GJ22332-PA 5..527 8..529 1277 45.6 Plus
Dvir\GJ22334-PA 533 GJ22334-PA 11..524 16..527 1192 44.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19685-PA 1227 GK19685-PA 1..516 1..517 1967 68.3 Plus
Dwil\GK21534-PA 489 GK21534-PA 1..485 1..520 1688 59.4 Plus
Dwil\GK21395-PA 533 GK21395-PA 4..529 5..529 1262 45.2 Plus
Dwil\GK11566-PA 532 GK11566-PA 5..526 8..529 1187 43.1 Plus
Dwil\GK12124-PA 540 GK12124-PA 9..535 11..535 1106 40.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11456-PA 537 GE11456-PA 1..537 1..537 2824 97 Plus
Dyak\GE13451-PA 535 GE13451-PA 2..527 5..529 1272 46.7 Plus
Dyak\GE13453-PA 535 GE13453-PA 4..527 7..529 1196 42.6 Plus
Dyak\GE24544-PA 534 GE24544-PA 4..527 7..529 1149 41.9 Plus
Dyak\GE13452-PA 672 GE13452-PA 4..526 7..529 1117 40.8 Plus
Dyak\GE13452-PA 672 GE13452-PA 549..664 404..529 359 54 Plus

RE01528.hyp Sequence

Translation from 32 to 1645

> RE01528.hyp
MPTKAVFPTFFNKETQVWSGPPRPTVYDHNTSVGQIVFNSLRCWPTNVIQ
ITDDDGTVLTNADMLAYATRIALFFKSEGLTQEDRVGIIANSSTFVIPVA
TACFFQATPFHAVNYSREPAIVQGLYSVTKPKIMFIDGPDYDRIKEITKE
WSPKLITLTGKVEGVTSIEDLVKPHPAEKIYVPASLATGGDQIAVVLCSS
GTAGLPKAVALSHRHIASTNSLCISTDVLYTSATIDWMTGFSITVMNLTC
GFTRIISRRTFSAETALYLVSKYKVTCLAMAPWQAYELFTSPLATSEQLE
SLKIAFVIGGWISLALLRRAQELLPKTYVMFSYGTTETGVVTINIDHSLE
CSVGRLAPGMRIKIQGEDGQQLGVNQTGEVLIDIGLKWEGYLSNPEDTAT
TLQDGWINLGDLGYFDEDNNLYLVDRKKDLLKYKSKHYWPNEIEQIIAEL
PEVEHVCVVGVRDARYGDAAGALIIKKEGAEIADQKVIDHVAQRVVVDYK
QLNAGVIFVDKFPKNANGKVMRSLAREVFEKTKPITF*

RE01528.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG4563-PA 537 CG4563-PA 1..537 1..537 2786 100 Plus
CG8834-PA 535 CG8834-PA 2..527 5..529 1257 46.5 Plus
CG4830-PA 534 CG4830-PA 5..527 8..529 1140 42.3 Plus
CG11453-PA 539 CG11453-PA 6..525 9..527 1048 39.9 Plus
CG11407-PA 538 CG11407-PA 7..534 9..533 924 36.4 Plus