BDGP Sequence Production Resources |
Search the DGRC for RE01590
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 15 |
Well: | 90 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG13126-RA |
Protein status: | RE01590.pep: gold |
Preliminary Size: | 1392 |
Sequenced Size: | 1610 |
Gene | Date | Evidence |
---|---|---|
CG13126 | 2001-12-14 | Blastp of sequenced clone |
CG13126 | 2002-01-01 | Sim4 clustering to Release 2 |
CG13126 | 2003-01-01 | Sim4 clustering to Release 3 |
CG13126 | 2008-04-29 | Release 5.5 accounting |
CG13126 | 2008-08-15 | Release 5.9 accounting |
CG13126 | 2008-12-18 | 5.12 accounting |
1610 bp (1610 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070900
> RE01590.complete ATTTGTTTTGATTTCTCGGTTACTTATTACTTAACTAATTAGAATTTAAT ATGAATTTTTCACTGAATTTCACAACGAGAAATCTAGTGCCACGACTGCA CCGATTCACCAGCAAGATTGCAGTGGACGTTGAACCAGCTGTGGTCTCTG CCCTGGAACATGCCACACTGAAGCCCAGAAAACATCCCGGAGTAGTGAGA CCCAATCATGTGGAACTGCCGAAACAATTGAATGATACGCTAAAGCGCAT CGTGGGGGATCATCCCGTCAAAAAACTAATCCACGATGGCCAGCAGCTCA ACGCCTATATCAAATCCCGCCATCCACCACCCACGCTGGAAGAGATTGAG AACAAGAAACGCATCGTTATCGAAGAGGTCAACACGAAGATGCCTCTGGA TCGCCTAGCTACACTCGACGAAGACGAGGCGGAGCGTTGGAGGCGCAAGC GGGAGCTGGAGATCAACAAGAGGCTGGGTCAGCGTATCTACGCCTGGAAG CGAATAGAATATGGAGCATACGAGTCGCTTGTGTACGCCATAGCTCGTGG TGCCCAGGAGTACGCCGTGTTGAAGCGCGTTCTCACGGAGCTGGCGCAGC GGGATGAACAGTTTCGGCCACGAAGCTTCTTTGACTTCGGATCCGGCATT GGAACCGGTATGTGGGTGGCCAGCGAACTGTGGCGCGAACACATATTCGA GTACTACAACGTGGACAGGTCCAGGGAGATGAATGAGATATCAGAGCTCA TTCTGCGCGATGGCCATGAGAACAAGCAAATAGCCCTGCGCAATGTATTT TATCGACAGTTCCTGCCCGCCATCGAAACCAATTATGATCTGGTCATTAT ATCTCATACGCTTTTTGAGTTGGAGAACAAAGAGCAGCGGGAGGATGTGC TGCGGAATCTGTGGCGGAAGTGCGATGGTTACCTGGTCATTGTGGAGGAG GGAACGCGCCGTGGCAGCGAGTTAGTCAACGAGGCTAGGCAATTTTTGTT GGAACAGGAACAAGAAGGTCACACTGTGGCACCATGTCCGCATGATTTGG TCTGTCCTCGACTTCGGGATCTGGCCGATCGAACGCCCTGCAATTTTCCC ATCTCCTACGCTCCCCTGCGTTTGGGTAGCGACTTCTTGGCAGACCGTCA CACCTCCCTCTACAGTTATGCCATCCTGAAGAAGGGTTCCCAATCCGATA GCTCAAGCTCCTGGCCGCGCATTGTGCGTCCCACCTTGGTAAGGTCAAAG CATGCCATCTGTCGGCTCTGCACAGAAAAGGGCACTCTCCAAGAGGTTAT CTTCACGAAGTCCAAGCACGGAAAGTCTGCCTATTCTTGTGCAAAAGTGA GTCGGTGGGGTGATCGTTTACCTATGTCGCTGGGACAGCCGCAAATCAAA CAAGAATCAATCGAATCAGAGGAACCACCTGTTTTGGCGTAGTCTAAGAT GTTGAACCAATTATATTAGGCATAAAGTCACGACCTGAAGCTAATTGATA CTAAAACTGGCATCCAATTAGTTGACTTAATTATGTGCAAACAAATCGTT GCGGGTGGAGCTGAATTTAATTAAACAGTTGCATTTAAGTTAACCAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13126-RA | 2039 | CG13126-RA | 85..1680 | 1..1596 | 7980 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9952041..9953074 | 1034..1 | 5170 | 100 | Minus |
chr2L | 23010047 | chr2L | 9951687..9951978 | 1326..1035 | 1460 | 100 | Minus |
chr2L | 23010047 | chr2L | 9951359..9951629 | 1595..1325 | 1310 | 98.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9953110..9954143 | 1034..1 | 5170 | 100 | Minus |
2L | 23513712 | 2L | 9952756..9953047 | 1326..1035 | 1460 | 100 | Minus |
2L | 23513712 | 2L | 9952427..9952698 | 1596..1325 | 1360 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9953110..9954143 | 1034..1 | 5170 | 100 | Minus |
2L | 23513712 | 2L | 9952756..9953047 | 1326..1035 | 1460 | 100 | Minus |
2L | 23513712 | 2L | 9952427..9952698 | 1596..1325 | 1360 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9951359..9951629 | 1325..1595 | 98 | <- | Minus |
chr2L | 9951689..9951978 | 1035..1324 | 100 | <- | Minus |
chr2L | 9952041..9953074 | 1..1034 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13126-RA | 1..1392 | 51..1442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13126-RA | 1..1392 | 51..1442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13126-RA | 1..1392 | 51..1442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13126-RA | 1..1392 | 51..1442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13126-RA | 1..1392 | 51..1442 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13126-RA | 1..1595 | 1..1595 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13126-RA | 38..1632 | 1..1595 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13126-RA | 39..1633 | 1..1595 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13126-RA | 1..1595 | 1..1595 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG13126-RA | 39..1633 | 1..1595 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9952428..9952698 | 1325..1595 | 100 | <- | Minus |
2L | 9952758..9953047 | 1035..1324 | 100 | <- | Minus |
2L | 9953110..9954143 | 1..1034 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9952428..9952698 | 1325..1595 | 100 | <- | Minus |
2L | 9952758..9953047 | 1035..1324 | 100 | <- | Minus |
2L | 9953110..9954143 | 1..1034 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9952428..9952698 | 1325..1595 | 100 | <- | Minus |
2L | 9952758..9953047 | 1035..1324 | 100 | <- | Minus |
2L | 9953110..9954143 | 1..1034 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9952428..9952698 | 1325..1595 | 100 | <- | Minus |
arm_2L | 9952758..9953047 | 1035..1324 | 100 | <- | Minus |
arm_2L | 9953110..9954143 | 1..1034 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9952428..9952698 | 1325..1595 | 100 | <- | Minus |
2L | 9952758..9953047 | 1035..1324 | 100 | <- | Minus |
2L | 9953110..9954143 | 1..1034 | 100 | Minus |
Translation from 50 to 1441
> RE01590.pep MNFSLNFTTRNLVPRLHRFTSKIAVDVEPAVVSALEHATLKPRKHPGVVR PNHVELPKQLNDTLKRIVGDHPVKKLIHDGQQLNAYIKSRHPPPTLEEIE NKKRIVIEEVNTKMPLDRLATLDEDEAERWRRKRELEINKRLGQRIYAWK RIEYGAYESLVYAIARGAQEYAVLKRVLTELAQRDEQFRPRSFFDFGSGI GTGMWVASELWREHIFEYYNVDRSREMNEISELILRDGHENKQIALRNVF YRQFLPAIETNYDLVIISHTLFELENKEQREDVLRNLWRKCDGYLVIVEE GTRRGSELVNEARQFLLEQEQEGHTVAPCPHDLVCPRLRDLADRTPCNFP ISYAPLRLGSDFLADRHTSLYSYAILKKGSQSDSSSSWPRIVRPTLVRSK HAICRLCTEKGTLQEVIFTKSKHGKSAYSCAKVSRWGDRLPMSLGQPQIK QESIESEEPPVLA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14146-PA | 465 | GF14146-PA | 1..456 | 1..456 | 2096 | 83.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23991-PA | 463 | GG23991-PA | 1..463 | 1..463 | 2329 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH10666-PA | 465 | GH10666-PA | 14..457 | 16..457 | 1891 | 76.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG13126-PB | 463 | CG13126-PB | 1..463 | 1..463 | 2423 | 100 | Plus |
CG13126-PA | 463 | CG13126-PA | 1..463 | 1..463 | 2423 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10996-PA | 478 | GI10996-PA | 27..470 | 16..457 | 1836 | 74.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19194-PA | 471 | GL19194-PA | 1..448 | 1..445 | 1984 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12064-PA | 471 | GA12064-PA | 1..448 | 1..445 | 1993 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12083-PA | 463 | GM12083-PA | 1..463 | 1..463 | 2414 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22320-PA | 463 | GD22320-PA | 1..463 | 1..463 | 2421 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18305-PA | 465 | GJ18305-PA | 14..456 | 16..456 | 1865 | 75.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14537-PA | 475 | GK14537-PA | 1..467 | 1..456 | 1853 | 73.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10126-PA | 463 | GE10126-PA | 1..463 | 1..463 | 2353 | 96.1 | Plus |
Translation from 50 to 1441
> RE01590.hyp MNFSLNFTTRNLVPRLHRFTSKIAVDVEPAVVSALEHATLKPRKHPGVVR PNHVELPKQLNDTLKRIVGDHPVKKLIHDGQQLNAYIKSRHPPPTLEEIE NKKRIVIEEVNTKMPLDRLATLDEDEAERWRRKRELEINKRLGQRIYAWK RIEYGAYESLVYAIARGAQEYAVLKRVLTELAQRDEQFRPRSFFDFGSGI GTGMWVASELWREHIFEYYNVDRSREMNEISELILRDGHENKQIALRNVF YRQFLPAIETNYDLVIISHTLFELENKEQREDVLRNLWRKCDGYLVIVEE GTRRGSELVNEARQFLLEQEQEGHTVAPCPHDLVCPRLRDLADRTPCNFP ISYAPLRLGSDFLADRHTSLYSYAILKKGSQSDSSSSWPRIVRPTLVRSK HAICRLCTEKGTLQEVIFTKSKHGKSAYSCAKVSRWGDRLPMSLGQPQIK QESIESEEPPVLA*