Clone RE01590 Report

Search the DGRC for RE01590

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:15
Well:90
Vector:pFlc-1
Associated Gene/TranscriptCG13126-RA
Protein status:RE01590.pep: gold
Preliminary Size:1392
Sequenced Size:1610

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13126 2001-12-14 Blastp of sequenced clone
CG13126 2002-01-01 Sim4 clustering to Release 2
CG13126 2003-01-01 Sim4 clustering to Release 3
CG13126 2008-04-29 Release 5.5 accounting
CG13126 2008-08-15 Release 5.9 accounting
CG13126 2008-12-18 5.12 accounting

Clone Sequence Records

RE01590.complete Sequence

1610 bp (1610 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070900

> RE01590.complete
ATTTGTTTTGATTTCTCGGTTACTTATTACTTAACTAATTAGAATTTAAT
ATGAATTTTTCACTGAATTTCACAACGAGAAATCTAGTGCCACGACTGCA
CCGATTCACCAGCAAGATTGCAGTGGACGTTGAACCAGCTGTGGTCTCTG
CCCTGGAACATGCCACACTGAAGCCCAGAAAACATCCCGGAGTAGTGAGA
CCCAATCATGTGGAACTGCCGAAACAATTGAATGATACGCTAAAGCGCAT
CGTGGGGGATCATCCCGTCAAAAAACTAATCCACGATGGCCAGCAGCTCA
ACGCCTATATCAAATCCCGCCATCCACCACCCACGCTGGAAGAGATTGAG
AACAAGAAACGCATCGTTATCGAAGAGGTCAACACGAAGATGCCTCTGGA
TCGCCTAGCTACACTCGACGAAGACGAGGCGGAGCGTTGGAGGCGCAAGC
GGGAGCTGGAGATCAACAAGAGGCTGGGTCAGCGTATCTACGCCTGGAAG
CGAATAGAATATGGAGCATACGAGTCGCTTGTGTACGCCATAGCTCGTGG
TGCCCAGGAGTACGCCGTGTTGAAGCGCGTTCTCACGGAGCTGGCGCAGC
GGGATGAACAGTTTCGGCCACGAAGCTTCTTTGACTTCGGATCCGGCATT
GGAACCGGTATGTGGGTGGCCAGCGAACTGTGGCGCGAACACATATTCGA
GTACTACAACGTGGACAGGTCCAGGGAGATGAATGAGATATCAGAGCTCA
TTCTGCGCGATGGCCATGAGAACAAGCAAATAGCCCTGCGCAATGTATTT
TATCGACAGTTCCTGCCCGCCATCGAAACCAATTATGATCTGGTCATTAT
ATCTCATACGCTTTTTGAGTTGGAGAACAAAGAGCAGCGGGAGGATGTGC
TGCGGAATCTGTGGCGGAAGTGCGATGGTTACCTGGTCATTGTGGAGGAG
GGAACGCGCCGTGGCAGCGAGTTAGTCAACGAGGCTAGGCAATTTTTGTT
GGAACAGGAACAAGAAGGTCACACTGTGGCACCATGTCCGCATGATTTGG
TCTGTCCTCGACTTCGGGATCTGGCCGATCGAACGCCCTGCAATTTTCCC
ATCTCCTACGCTCCCCTGCGTTTGGGTAGCGACTTCTTGGCAGACCGTCA
CACCTCCCTCTACAGTTATGCCATCCTGAAGAAGGGTTCCCAATCCGATA
GCTCAAGCTCCTGGCCGCGCATTGTGCGTCCCACCTTGGTAAGGTCAAAG
CATGCCATCTGTCGGCTCTGCACAGAAAAGGGCACTCTCCAAGAGGTTAT
CTTCACGAAGTCCAAGCACGGAAAGTCTGCCTATTCTTGTGCAAAAGTGA
GTCGGTGGGGTGATCGTTTACCTATGTCGCTGGGACAGCCGCAAATCAAA
CAAGAATCAATCGAATCAGAGGAACCACCTGTTTTGGCGTAGTCTAAGAT
GTTGAACCAATTATATTAGGCATAAAGTCACGACCTGAAGCTAATTGATA
CTAAAACTGGCATCCAATTAGTTGACTTAATTATGTGCAAACAAATCGTT
GCGGGTGGAGCTGAATTTAATTAAACAGTTGCATTTAAGTTAACCAAAAA
AAAAAAAAAA

RE01590.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-RA 2039 CG13126-RA 85..1680 1..1596 7980 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9952041..9953074 1034..1 5170 100 Minus
chr2L 23010047 chr2L 9951687..9951978 1326..1035 1460 100 Minus
chr2L 23010047 chr2L 9951359..9951629 1595..1325 1310 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9953110..9954143 1034..1 5170 100 Minus
2L 23513712 2L 9952756..9953047 1326..1035 1460 100 Minus
2L 23513712 2L 9952427..9952698 1596..1325 1360 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9953110..9954143 1034..1 5170 100 Minus
2L 23513712 2L 9952756..9953047 1326..1035 1460 100 Minus
2L 23513712 2L 9952427..9952698 1596..1325 1360 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:18:36 has no hits.

RE01590.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:19:28 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9951359..9951629 1325..1595 98 <- Minus
chr2L 9951689..9951978 1035..1324 100 <- Minus
chr2L 9952041..9953074 1..1034 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:45:51 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 1..1392 51..1442 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:02:21 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 1..1392 51..1442 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:13:48 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 1..1392 51..1442 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:49 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 1..1392 51..1442 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:19 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 1..1392 51..1442 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:29:05 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 1..1595 1..1595 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:02:20 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 38..1632 1..1595 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:48 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 39..1633 1..1595 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:49 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 1..1595 1..1595 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:19 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
CG13126-RA 39..1633 1..1595 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:19:28 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9952428..9952698 1325..1595 100 <- Minus
2L 9952758..9953047 1035..1324 100 <- Minus
2L 9953110..9954143 1..1034 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:19:28 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9952428..9952698 1325..1595 100 <- Minus
2L 9952758..9953047 1035..1324 100 <- Minus
2L 9953110..9954143 1..1034 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:19:28 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9952428..9952698 1325..1595 100 <- Minus
2L 9952758..9953047 1035..1324 100 <- Minus
2L 9953110..9954143 1..1034 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:48 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9952428..9952698 1325..1595 100 <- Minus
arm_2L 9952758..9953047 1035..1324 100 <- Minus
arm_2L 9953110..9954143 1..1034 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:02:40 Download gff for RE01590.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9952428..9952698 1325..1595 100 <- Minus
2L 9952758..9953047 1035..1324 100 <- Minus
2L 9953110..9954143 1..1034 100   Minus

RE01590.pep Sequence

Translation from 50 to 1441

> RE01590.pep
MNFSLNFTTRNLVPRLHRFTSKIAVDVEPAVVSALEHATLKPRKHPGVVR
PNHVELPKQLNDTLKRIVGDHPVKKLIHDGQQLNAYIKSRHPPPTLEEIE
NKKRIVIEEVNTKMPLDRLATLDEDEAERWRRKRELEINKRLGQRIYAWK
RIEYGAYESLVYAIARGAQEYAVLKRVLTELAQRDEQFRPRSFFDFGSGI
GTGMWVASELWREHIFEYYNVDRSREMNEISELILRDGHENKQIALRNVF
YRQFLPAIETNYDLVIISHTLFELENKEQREDVLRNLWRKCDGYLVIVEE
GTRRGSELVNEARQFLLEQEQEGHTVAPCPHDLVCPRLRDLADRTPCNFP
ISYAPLRLGSDFLADRHTSLYSYAILKKGSQSDSSSSWPRIVRPTLVRSK
HAICRLCTEKGTLQEVIFTKSKHGKSAYSCAKVSRWGDRLPMSLGQPQIK
QESIESEEPPVLA*

RE01590.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14146-PA 465 GF14146-PA 1..456 1..456 2096 83.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:21:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23991-PA 463 GG23991-PA 1..463 1..463 2329 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10666-PA 465 GH10666-PA 14..457 16..457 1891 76.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-PB 463 CG13126-PB 1..463 1..463 2423 100 Plus
CG13126-PA 463 CG13126-PA 1..463 1..463 2423 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:21:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10996-PA 478 GI10996-PA 27..470 16..457 1836 74.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19194-PA 471 GL19194-PA 1..448 1..445 1984 79.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:21:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12064-PA 471 GA12064-PA 1..448 1..445 1993 79.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:21:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12083-PA 463 GM12083-PA 1..463 1..463 2414 97.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22320-PA 463 GD22320-PA 1..463 1..463 2421 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18305-PA 465 GJ18305-PA 14..456 16..456 1865 75.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14537-PA 475 GK14537-PA 1..467 1..456 1853 73.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10126-PA 463 GE10126-PA 1..463 1..463 2353 96.1 Plus

RE01590.hyp Sequence

Translation from 50 to 1441

> RE01590.hyp
MNFSLNFTTRNLVPRLHRFTSKIAVDVEPAVVSALEHATLKPRKHPGVVR
PNHVELPKQLNDTLKRIVGDHPVKKLIHDGQQLNAYIKSRHPPPTLEEIE
NKKRIVIEEVNTKMPLDRLATLDEDEAERWRRKRELEINKRLGQRIYAWK
RIEYGAYESLVYAIARGAQEYAVLKRVLTELAQRDEQFRPRSFFDFGSGI
GTGMWVASELWREHIFEYYNVDRSREMNEISELILRDGHENKQIALRNVF
YRQFLPAIETNYDLVIISHTLFELENKEQREDVLRNLWRKCDGYLVIVEE
GTRRGSELVNEARQFLLEQEQEGHTVAPCPHDLVCPRLRDLADRTPCNFP
ISYAPLRLGSDFLADRHTSLYSYAILKKGSQSDSSSSWPRIVRPTLVRSK
HAICRLCTEKGTLQEVIFTKSKHGKSAYSCAKVSRWGDRLPMSLGQPQIK
QESIESEEPPVLA*

RE01590.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13126-PB 463 CG13126-PB 1..463 1..463 2423 100 Plus
CG13126-PA 463 CG13126-PA 1..463 1..463 2423 100 Plus