Clone RE01652 Report

Search the DGRC for RE01652

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:16
Well:52
Vector:pFlc-1
Associated Gene/TranscriptCG12171-RA
Protein status:RE01652.pep: gold
Preliminary Size:801
Sequenced Size:1034

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12171 2001-11-29 Blastp of sequenced clone
CG12171 2002-01-01 Sim4 clustering to Release 2
CG12171 2003-01-01 Sim4 clustering to Release 3
CG12171 2008-04-29 Release 5.5 accounting
CG12171 2008-08-15 Release 5.9 accounting
CG12171 2008-12-18 5.12 accounting

Clone Sequence Records

RE01652.complete Sequence

1034 bp (1034 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069767

> RE01652.complete
GACTTCTGGGTCGGGTCTTCAATGTCACCAATCACTATCAGTTAAACCGT
CGAGTGGATCACTTCAACATGCCCAGTTTCAAGGATAAAGTTATAATCGT
GACCGGAGCCAGTTCGGGAATTGGAGCGGGTACTTCGGTGCTCTTGGCTA
AACTGGGAGGCCTGCTCACCATCGTGGGCAGGAATTTGGATAAGCTCAAC
GAGACCGCGGAGCAGATAGTGGCAGCTGGAGGAGCGCCAGCACTCCAGGT
GGCGGCGGACATAAACAGCGAGTCCGACGTCCAGGGCATCGTCTCCGCCA
CATTGGCCAAGCACGGTCGCATCGACGTGCTGGTGAACAACGCCGGAATC
TTGGAGCTAGGCAGCATCGAGAACACCAGTCTGGAGCAGTTTGACCGCGT
TATGAACACCAACGTCCGGTCGCTCTACCAGCTGACCCACCTGGTCACAC
CGGAGCTAATCAAGACCAAGGGCAACATTGTAAACGTGTCTAGTGTGAAC
GGCATCCGTTCCTTTCCCGGAGTCTTAGCATACAATGTTTCCAAGGCTGC
CGTGGATCAGTTCACCAGGTGCGTGGCTCTGGAGCTAGCTCCCAAGGGTG
TGCGTGTGAACTCCGTGAATCCCGGCGTAATCATCACCGAGCTGCAGCGT
CGTGGTGGACTGGACCAGGAAGCCTACGTCAAGTTCCTCGAGCACGCCAA
GGTCACCCATGCCCTGGGTCGACCCGGCGAAGTCAAGGAGGTGGCTGCGG
CCATTGCATTCCTGGCCAGCGACGAGGCCAGCTTCAGCACCGGTATCAGC
CTGCCCGTGGACGGCGGTCGCCATGCCATGTGCCCCAGATAAGAACGGAG
TTTTTTATCCATGCATGCATTTATCTTATTTTTTTATTTTTAATTAAAGT
AGCGCGCTTACCTCGTGTATTTCAAATACTTTTCAAGGATGTGATTCTAT
GTAAATGTAATAGTTTGCTAGAAATAAATAAAATGAAAACCGCCCTATAA
AAATTGGCAACGTACGCCAAAAAAAAAAAAAAAA

RE01652.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-RA 1017 CG12171-RA 1..1017 1..1017 5085 100 Plus
CG31548-RA 946 CG31548-RA 650..804 681..835 535 89.6 Plus
CG31549-RA 1130 CG31549-RA 787..971 651..835 445 82.7 Plus
CG31549-RA 1130 CG31549-RA 432..632 296..496 390 79.6 Plus
CG31548-RA 946 CG31548-RA 296..483 327..514 340 78.7 Plus
CG31548-RA 946 CG31548-RA 521..597 552..628 250 88.3 Plus
CG31549-RA 1130 CG31549-RA 643..764 507..628 205 77.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 1459282..1460298 1..1017 5085 100 Plus
chr3R 27901430 chr3R 1461700..1462208 835..327 985 79.6 Minus
chr3R 27901430 chr3R 1458063..1458820 78..835 970 75.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5633624..5634640 1..1017 5085 100 Plus
3R 32079331 3R 5636042..5636550 835..327 985 79.6 Minus
3R 32079331 3R 5632405..5633162 78..835 970 75.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 5374455..5375471 1..1017 5085 100 Plus
3R 31820162 3R 5376873..5377027 835..681 535 89.6 Minus
3R 31820162 3R 5373809..5373993 651..835 445 82.7 Plus
3R 31820162 3R 5373454..5373654 296..496 390 79.6 Plus
3R 31820162 3R 5377194..5377381 514..327 340 78.7 Minus
3R 31820162 3R 5377080..5377156 628..552 250 88.3 Minus
3R 31820162 3R 5373665..5373786 507..628 205 77.8 Plus
3R 31820162 3R 5375627..5375706 814..735 145 78.7 Minus
Blast to na_te.dros performed on 2019-03-15 16:16:41 has no hits.

RE01652.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:17:34 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 1459282..1460298 1..1018 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:45:53 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 1..774 69..842 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:40 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 1..774 69..842 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:58:38 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 1..774 69..842 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:50 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 1..774 69..842 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:32:14 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 1..774 69..842 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:53:08 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 1..1017 1..1017 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:39 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 1..1017 1..1017 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:38 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 1..1014 4..1017 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:50 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 1..1017 1..1017 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:32:14 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
CG12171-RA 1..1014 4..1017 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:34 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5633624..5634640 1..1018 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:34 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5633624..5634640 1..1018 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:17:34 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5633624..5634640 1..1018 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:38 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1459346..1460362 1..1018 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:13 Download gff for RE01652.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5374455..5375471 1..1018 99   Plus

RE01652.hyp Sequence

Translation from 2 to 841

> RE01652.hyp
LLGRVFNVTNHYQLNRRVDHFNMPSFKDKVIIVTGASSGIGAGTSVLLAK
LGGLLTIVGRNLDKLNETAEQIVAAGGAPALQVAADINSESDVQGIVSAT
LAKHGRIDVLVNNAGILELGSIENTSLEQFDRVMNTNVRSLYQLTHLVTP
ELIKTKGNIVNVSSVNGIRSFPGVLAYNVSKAAVDQFTRCVALELAPKGV
RVNSVNPGVIITELQRRGGLDQEAYVKFLEHAKVTHALGRPGEVKEVAAA
IAFLASDEASFSTGISLPVDGGRHAMCPR*

RE01652.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-PA 257 CG12171-PA 1..257 23..279 1269 100 Plus
CG31549-PB 257 CG31549-PB 1..257 23..279 1058 80.9 Plus
CG31549-PA 257 CG31549-PA 1..257 23..279 1058 80.9 Plus
CG31548-PA 256 CG31548-PA 2..256 25..279 901 68.6 Plus
CG31546-PA 264 CG31546-PA 11..264 26..279 672 52.9 Plus

RE01652.pep Sequence

Translation from 68 to 841

> RE01652.pep
MPSFKDKVIIVTGASSGIGAGTSVLLAKLGGLLTIVGRNLDKLNETAEQI
VAAGGAPALQVAADINSESDVQGIVSATLAKHGRIDVLVNNAGILELGSI
ENTSLEQFDRVMNTNVRSLYQLTHLVTPELIKTKGNIVNVSSVNGIRSFP
GVLAYNVSKAAVDQFTRCVALELAPKGVRVNSVNPGVIITELQRRGGLDQ
EAYVKFLEHAKVTHALGRPGEVKEVAAAIAFLASDEASFSTGISLPVDGG
RHAMCPR*

RE01652.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16339-PA 257 GF16339-PA 1..257 1..257 1229 91.1 Plus
Dana\GF16338-PA 257 GF16338-PA 1..257 1..257 1102 80.2 Plus
Dana\GF18656-PA 256 GF18656-PA 2..256 3..257 931 69.1 Plus
Dana\GF22046-PA 251 GF22046-PA 2..251 3..257 643 53.3 Plus
Dana\GF18657-PA 264 GF18657-PA 11..263 4..256 550 45.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12970-PA 257 GG12970-PA 1..257 1..257 1310 97.7 Plus
Dere\GG12965-PA 257 GG12965-PA 1..257 1..257 1111 80.5 Plus
Dere\GG10914-PA 256 GG10914-PA 2..256 3..257 926 67.5 Plus
Dere\GG12728-PA 251 GG12728-PA 2..251 3..257 656 54.5 Plus
Dere\GG10919-PA 264 GG10919-PA 11..264 4..257 615 52.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22973-PA 257 GH22973-PA 1..257 1..257 1104 79.8 Plus
Dgri\GH22984-PA 257 GH22984-PA 1..257 1..257 1072 79 Plus
Dgri\GH17517-PA 257 GH17517-PA 2..257 3..257 829 61.3 Plus
Dgri\GH17658-PA 242 GH17658-PA 5..238 4..250 323 36.4 Plus
Dgri\GH12482-PA 248 GH12482-PA 9..246 7..250 265 33.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12171-PA 257 CG12171-PA 1..257 1..257 1269 100 Plus
CG31549-PB 257 CG31549-PB 1..257 1..257 1058 80.9 Plus
CG31549-PA 257 CG31549-PA 1..257 1..257 1058 80.9 Plus
CG31548-PA 256 CG31548-PA 2..256 3..257 901 68.6 Plus
CG31546-PA 264 CG31546-PA 11..264 4..257 672 52.9 Plus
CG3699-PA 251 CG3699-PA 2..251 3..257 651 53.7 Plus
CG7322-PC 242 CG7322-PC 8..238 7..250 320 35.7 Plus
CG7322-PB 242 CG7322-PB 8..238 7..250 320 35.7 Plus
CG7322-PA 242 CG7322-PA 8..238 7..250 320 35.7 Plus
CG3603-PB 249 CG3603-PB 9..247 7..250 277 32.8 Plus
CG3603-PA 249 CG3603-PA 9..247 7..250 277 32.8 Plus
CG10672-PA 317 CG10672-PA 66..315 1..253 263 29.8 Plus
CG7601-PA 326 CG7601-PA 54..243 7..192 226 29.5 Plus
scu-PA 255 CG7113-PA 3..234 5..229 225 29.8 Plus
CG2065-PB 300 CG2065-PB 15..221 7..209 213 30.4 Plus
CG2065-PA 300 CG2065-PA 15..221 7..209 213 30.4 Plus
CG2064-PA 330 CG2064-PA 44..255 7..206 212 29.3 Plus
antdh-PA 250 CG1386-PA 1..203 1..192 207 29.1 Plus
CG40485-PC 247 CG40485-PC 1..203 1..192 201 27.6 Plus
CG40485-PB 247 CG40485-PB 1..203 1..192 201 27.6 Plus
CG30491-PB 331 CG30491-PB 46..248 7..197 200 32.2 Plus
CG30491-PA 331 CG30491-PA 46..248 7..197 200 32.2 Plus
CG7675-PE 287 CG7675-PE 4..204 7..194 197 31.7 Plus
CG7675-PC 287 CG7675-PC 4..204 7..194 197 31.7 Plus
CG7675-PA 287 CG7675-PA 4..204 7..194 197 31.7 Plus
CG7675-PD 336 CG7675-PD 53..253 7..194 197 31.7 Plus
CG7675-PB 336 CG7675-PB 53..253 7..194 197 31.7 Plus
CG5590-PA 412 CG5590-PA 10..201 7..189 196 26.9 Plus
CG13284-PE 325 CG13284-PE 60..244 10..192 190 28.5 Plus
CG13284-PA 325 CG13284-PA 60..244 10..192 190 28.5 Plus
CG13284-PC 338 CG13284-PC 73..257 10..192 190 28.5 Plus
CG13284-PD 339 CG13284-PD 74..258 10..192 190 28.5 Plus
CG13284-PB 339 CG13284-PB 74..258 10..192 190 28.5 Plus
CG6012-PA 308 CG6012-PA 54..259 11..205 188 30.4 Plus
Mfe2-PB 598 CG3415-PB 10..197 4..185 188 29.2 Plus
Mfe2-PA 598 CG3415-PA 10..197 4..185 188 29.2 Plus
CG10962-PB 249 CG10962-PB 1..202 1..192 187 26.7 Plus
CG31809-PC 316 CG31809-PC 52..247 10..198 187 29.3 Plus
CG31809-PB 316 CG31809-PB 52..247 10..198 187 29.3 Plus
CG31810-PA 324 CG31810-PA 60..255 10..198 187 29.3 Plus
CG17121-PA 361 CG17121-PA 93..260 7..173 184 28 Plus
spidey-PA 321 CG1444-PA 56..245 10..194 181 27.8 Plus
CG40486-PC 247 CG40486-PC 1..207 1..196 177 27.5 Plus
CG40486-PB 247 CG40486-PB 1..207 1..196 177 27.5 Plus
CG13833-PA 321 CG13833-PA 49..240 3..190 176 27.6 Plus
CG40485-PA 231 CG40485-PA 1..202 1..193 174 25.2 Plus
Pdh-PD 260 CG4899-PD 2..188 3..192 174 27.6 Plus
Pdh-PB 277 CG4899-PB 19..205 3..192 174 27.6 Plus
Pdh-PC 261 CG4899-PC 2..189 3..192 170 27 Plus
Pdh-PA 278 CG4899-PA 19..206 3..192 170 27 Plus
CG2070-PB 325 CG2070-PB 44..243 7..194 169 27.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10241-PA 257 GI10241-PA 1..257 1..257 1069 76.7 Plus
Dmoj\GI10240-PA 257 GI10240-PA 1..257 1..257 1032 78.2 Plus
Dmoj\GI22521-PA 256 GI22521-PA 2..256 3..257 932 68.2 Plus
Dmoj\GI14997-PA 255 GI14997-PA 2..255 3..257 654 53.1 Plus
Dmoj\GI21510-PA 242 GI21510-PA 5..238 4..250 302 34.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24511-PA 257 GL24511-PA 1..257 1..257 1169 86 Plus
Dper\GL24510-PA 257 GL24510-PA 1..257 1..257 1090 80.2 Plus
Dper\GL23021-PA 256 GL23021-PA 2..256 3..257 1012 76.2 Plus
Dper\GL14417-PA 255 GL14417-PA 2..255 3..257 647 52.7 Plus
Dper\GL21318-PA 350 GL21318-PA 113..346 4..250 323 36.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11451-PA 257 GA11451-PA 1..257 1..257 1170 86.4 Plus
Dpse\GA27306-PA 257 GA27306-PA 1..257 1..257 1090 80.2 Plus
Dpse\GA16317-PA 256 GA16317-PA 2..256 3..257 1001 75 Plus
Dpse\GA17622-PA 255 GA17622-PA 2..255 3..257 647 52.7 Plus
Dpse\GA20258-PA 242 GA20258-PA 5..238 4..250 323 36.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10826-PA 257 GM10826-PA 1..257 1..257 1298 96.9 Plus
Dsec\GM10825-PA 257 GM10825-PA 1..257 1..257 1109 80.9 Plus
Dsec\GM10606-PA 256 GM10606-PA 2..256 3..257 942 69 Plus
Dsec\GM19006-PA 251 GM19006-PA 2..251 3..257 657 53.7 Plus
Dsec\GM10607-PA 264 GM10607-PA 11..264 4..257 615 52.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19803-PA 257 GD19803-PA 1..257 1..257 1291 96.9 Plus
Dsim\GD19595-PA 256 GD19595-PA 2..256 3..257 942 69 Plus
Dsim\GD16445-PA 251 GD16445-PA 2..251 3..257 657 53.7 Plus
Dsim\GD19596-PA 264 GD19596-PA 11..264 4..257 615 52.9 Plus
Dsim\GD19802-PA 1449 GD19802-PA 1351..1449 159..257 467 81.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11045-PA 257 GJ11045-PA 1..257 1..257 1088 80.2 Plus
Dvir\GJ11044-PA 257 GJ11044-PA 1..257 1..257 1021 79 Plus
Dvir\GJ10125-PA 255 GJ10125-PA 2..255 3..257 946 69.4 Plus
Dvir\GJ10124-PA 255 GJ10124-PA 2..255 3..257 922 66.7 Plus
Dvir\GJ15354-PA 255 GJ15354-PA 2..255 3..257 657 53.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13928-PA 257 GK13928-PA 1..257 1..257 1140 85.2 Plus
Dwil\GK13927-PA 257 GK13927-PA 1..257 1..257 1097 80.2 Plus
Dwil\GK13365-PA 256 GK13365-PA 2..256 3..257 867 67.8 Plus
Dwil\GK10169-PA 255 GK10169-PA 2..255 3..257 641 52.7 Plus
Dwil\GK20088-PA 242 GK20088-PA 5..238 4..250 353 37.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10147-PA 257 GE10147-PA 1..257 1..257 1277 95.3 Plus
Dyak\GE10146-PA 257 GE10146-PA 1..257 1..257 1102 79.8 Plus
Dyak\GE24152-PA 256 GE24152-PA 2..256 3..257 946 69 Plus
Dyak\GE16554-PA 251 GE16554-PA 2..251 3..257 640 53.3 Plus
Dyak\GE24153-PA 264 GE24153-PA 11..264 4..257 611 52.9 Plus