Clone RE01674 Report

Search the DGRC for RE01674

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:16
Well:74
Vector:pFlc-1
Associated Gene/TranscriptCG17490-RD
Protein status:RE01674.pep: gold
Sequenced Size:1394

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17490 2008-04-29 Release 5.5 accounting
CG17490 2008-08-15 Release 5.9 accounting
CG17490 2008-12-18 5.12 accounting

Clone Sequence Records

RE01674.complete Sequence

1394 bp (1394 high quality bases) assembled on 2005-08-09

GenBank Submission: BT023831

> RE01674.complete
AGTTAAGGAACTCTCCTTATAAATAAATAACGTTTTACCGCTTTATACTC
GCCAAGGTACCGGTAGAAAGTTGTGGAAATACATTCCGAGCAATTTTCAG
TGGAAGAATAGTACCTGCGAAATACAGGTTGAACAATAAGCAATTTATGG
AAAGGAAACCAAGTATACCAAAAATCAGGCAGGTCAGCAGTCTTGGAAGT
CAATTCACTTTTCCCAATATAGCGGATCTATTTTGCAATGCCGTCTCCAT
TCACAATGACTATTGTAAATTGCATTTTATAAACGAAAAGTTGCAATTCC
ATTTAAATGGAATGTTGGAAAGTAAAGATGCTTCAGCGATTTACTATTTT
AAGCAACATATTATTCTAAACTCGGATCAACTGGAATCTGCATCCAAAAA
TTATGACATGACCTTTCATACAATAATGAGAAGGTGGGAAACTGACCGGA
AAACGTAAAGCCGACGCTGTCGATATACTAGGCCAAGTTGACAGGTTGCT
TGTGAGGCTCGAGTGCAGGGAAATAGAAGGAGAGAGTGGAGGGGAGAGCC
GTGCACTGCAAACTGCAAGCGCGGGAGACACCCGCTGACTATATGAGGGA
CTTAATCGAGAGAGTCTCGAAAACTTGGAAAACCAGCCAGAGGAGGTAGG
ACACGTAACAGACCAAATGGAGACCACAATGGGTGAAGCAGCCGGAGGAA
TAGAACTACCACCACTTGGCTATACTAGGTGTCCCTCCAGTGTGCTTCCG
CGGTACCAGTCAAGTTCAGAAGACCGGTCGGATGCTACGGACAGGCGTGA
ACGAGAGCTAATGAAAATGAGCGTACAAATAAACGCTCTGAAGAAGAAGG
TGGATGAATTACACGCCGCAGAGACCTTTACGGAGCAAGACCAATACCAC
CACATGCACTACCTAGAATTCGTACGGATAGCTTTCTAAGGCTTCAAGAC
ACACCGACACCAGTAAAAGTGTCGCAAGAGTGCTGTAACGACCAGATGCA
TCGATTGAGGGAGCCCAGGCGAACGGCGAAACCACAGTAGATACCTTAAG
AATGCGTTGCCGAGGAACCCAGTCACCAGTTTTTCTCCAAGTAATGACCA
TCACCTCCGGTTTTCGAATTCGTAAAATTTTTTGATTTGTGAAATGGGTA
CTTTTGTCTGTCCGAAATGCCTGTAAAAGTAAAGTAAATGCCTGTTTTCA
TATCAAATCAGATCTTATTTTTAAAGGGAAAATTAGTTCACTTAGCCTAT
TGATGTTTATTCCATATCCCCAAAATGTCATTCTAGCCACTAAGGTATTT
TATAATAAATTTATTTGCGACTCTACCACAGATTTGACATAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

RE01674.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-RD 1347 CG17490-RD 1..1346 1..1346 6700 99.8 Plus
CG17490-RC 1381 CG17490-RC 112..1381 56..1325 6335 99.9 Plus
nc_4316.a 4508 nc_4316.a 69..813 1172..428 3710 99.8 Minus
CG17490-RC 1381 CG17490-RC 1..46 13..58 230 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 22438779..22439691 428..1340 4535 99.8 Plus
chr2L 23010047 chr2L 22431192..22431565 55..428 1870 100 Plus
chr2L 23010047 chr2L 22429473..22429530 1..58 290 100 Plus
chr3LHet 2555433 chr3LHet 839951..840021 682..612 220 87.3 Minus
chr2L 23010047 chr2L 22454958..22455017 428..487 210 90 Plus
chr3L 24539361 chr3L 23252038..23252105 1105..1172 205 86.8 Plus
chr2L 23010047 chr2L 22479866..22479911 473..428 200 95.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22547539..22548457 428..1346 4565 99.8 Plus
2L 23513712 2L 22539951..22540324 55..428 1870 100 Plus
2L 23513712 2L 22538232..22538289 1..58 290 100 Plus
3L 28110227 3L 25354475..25354545 682..612 220 87.3 Minus
2L 23513712 2L 22563720..22563779 428..487 210 90 Plus
3L 28110227 3L 23263121..23263188 1105..1172 205 86.8 Plus
2L 23513712 2L 22588646..22588691 473..428 200 95.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22547539..22548457 428..1346 4565 99.7 Plus
2L 23513712 2L 22539951..22540324 55..428 1870 100 Plus
2L 23513712 2L 22538232..22538289 1..58 290 100 Plus
3L 28103327 3L 25347575..25347645 682..612 220 87.3 Minus
2L 23513712 2L 22563720..22563779 428..487 210 90 Plus
3L 28103327 3L 23256221..23256288 1105..1172 205 86.7 Plus
2L 23513712 2L 22588646..22588691 473..428 200 95.6 Minus
3L 28103327 3L 25347215..25347302 1082..995 155 78.4 Minus
Blast to na_te.dros performed on 2019-03-16 20:53:32 has no hits.

RE01674.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:54:27 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 22429473..22429528 1..56 100 -> Plus
chr2L 22431194..22431565 57..428 100 -> Plus
chr2L 22438780..22439691 429..1340 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:40:04 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..405 55..458 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:55:03 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..405 55..458 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:29:50 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..405 55..458 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:35:43 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..405 55..458 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:24 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RC 1..405 55..458 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:40:04 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RD 1..1340 1..1340 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:03 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RD 1..1340 1..1340 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:50 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RD 1..1340 1..1340 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:35:44 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RD 1..1340 1..1340 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:24 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
CG17490-RD 3..1342 1..1340 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:27 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22538232..22538287 1..56 100 -> Plus
2L 22539953..22540324 57..428 100 -> Plus
2L 22547540..22548451 429..1340 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:27 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22538232..22538287 1..56 100 -> Plus
2L 22539953..22540324 57..428 100 -> Plus
2L 22547540..22548451 429..1340 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:54:27 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22538232..22538287 1..56 100 -> Plus
2L 22539953..22540324 57..428 100 -> Plus
2L 22547540..22548451 429..1340 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:50 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22430964..22431019 1..56 100 -> Plus
arm_2L 22432685..22433056 57..428 100 -> Plus
arm_2L 22440272..22441183 429..1340 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:14:18 Download gff for RE01674.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22539953..22540324 57..428 100 -> Plus
2L 22547540..22548451 429..1340 99   Plus
2L 22538232..22538287 1..56 100 -> Plus

RE01674.pep Sequence

Translation from 146 to 457

> RE01674.pep
MERKPSIPKIRQVSSLGSQFTFPNIADLFCNAVSIHNDYCKLHFINEKLQ
FHLNGMLESKDASAIYYFKQHIILNSDQLESASKNYDMTFHTIMRRWETD
RKT*

RE01674.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PG 707 CG17490-PG 578..671 1..94 494 100 Plus
CG17490-PE 707 CG17490-PE 578..671 1..94 494 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26731-PA 707 GM26731-PA 578..671 1..94 421 85.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:19:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17705-PA 707 GD17705-PA 578..671 1..94 415 84 Plus

RE01674.hyp Sequence

Translation from 146 to 457

> RE01674.hyp
MERKPSIPKIRQVSSLGSQFTFPNIADLFCNAVSIHNDYCKLHFINEKLQ
FHLNGMLESKDASAIYYFKQHIILNSDQLESASKNYDMTFHTIMRRWETD
RKT*

RE01674.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17490-PD 103 CG17490-PD 1..103 1..103 546 100 Plus
CG17490-PC 134 CG17490-PC 32..134 1..103 546 100 Plus
CG17490-PF 130 CG17490-PF 1..94 1..94 494 100 Plus
CG17490-PA 130 CG17490-PA 1..94 1..94 494 100 Plus
CG17490-PG 707 CG17490-PG 578..671 1..94 494 100 Plus