Clone RE01689 Report

Search the DGRC for RE01689

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:16
Well:89
Vector:pFlc-1
Associated Gene/Transcripttgy-RD
Protein status:RE01689.pep: wuzgold
Preliminary Size:1310
Sequenced Size:1627

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7440 2001-11-29 Blastp of sequenced clone
CG7440 2002-01-01 Sim4 clustering to Release 2
CG7440 2003-01-01 Sim4 clustering to Release 3
tgy 2008-04-29 Release 5.5 accounting
tgy 2008-08-15 Release 5.9 accounting
tgy 2008-12-18 5.12 accounting

Clone Sequence Records

RE01689.complete Sequence

1627 bp (1627 high quality bases) assembled on 2001-11-29

GenBank Submission: AY069768

> RE01689.complete
AGTGTTTCAATGGCCGGGGAATATATCATACTGGAGAACTCGTCGACTTA
TCCGGGCTTCCATTCCAGTTCCAACGGATTGGCGAATGGCATGTACCGCT
CCGCCCAGCGCATCTCCACCGATCGCCTGGTCCTGCTCATTCTGCTGGTG
AGCACCACGGTGATCGGGCTGTTTGCCTACTGGGATGTAATGGTGCTCAA
CGCCGGCGCACTGCCACTGTCCAGAGGCACTAGCTCTGTTGATTACATGG
AGCCTGGACTGCGCAACGAAACCCTGGCCGAGAAGATGCATCGGGAGGTG
AGAGTCCTGTGCTGGGTGCTCACCACACCCAAATACCACAAGACCCGGGC
CATTCACGTTTTGCGAACGTGGGGCAAACGCTGCAATAAGATCTACTTCA
TGACCTCTGAGCCGGATGACGAGCTGCCCACCGTTGTGCTGACCAAGCCG
GACCGATACGAGATGCTGTGGGGCAAGACCAAAGAGGCCTTTGTCCACAT
CCACGAGCAGATGCGCCACGAGGCGGATTGGTTCATAAAGGCGGACGACG
ACACGTATGTGAAAGATTCAGATTCTTAAATAGGGAAAGAGTGGCATTTT
ATTGCAGGAATTGATAAGTGAATGGATGGTTGTTTCGTCACCACAGATAC
ACGTACATATGTATATATGTATGTATGTATTTATTGAACATTATTATCAT
TCTGTTTTACCTTTGTGGTGTAACTACTGATGGTATCTCAATGTTAGGGC
CACAGCCAAAACAGTTGAATGAAGAATAATTAGGAACCGATAAAGAAAAG
ATAGCATTATTAAAGTTTGACTGAACTTTCAATCTGCTCCTATCAATAGC
TACCTCTTTTTGGAAAATCTGCGCTACATGCTCTACCCGTATTCACCGGA
GACACCTATTTATTTTGGATTTAATTACAAGATGGTCGGCACTCACCAGA
AGAACGAGTCATACATGTCCGGCGGCAGTGGCTACGTACTGAGCCGCGAG
GCTCTTAGGATCTTCGCCGAGGGCGTCAACGACACCACCAAGTGTCGCCA
GGAGGACGATCACGCCGAGGACGTCGAGATGGGCAAGTGCCTGTTCAACC
TGGGCGTGAAGGCGGGTGATTCCAGGGACGAGCAGCTGCGCAACCGCTTC
TATCCCATAGCTCCTTATGGAGCCCTTCTCTCGGGCAACGTTGGCATGGA
CTTTTGGTTGTACAAGTACGCCTACTACAATCCGAGATCGTGCATGGACT
GCCTGTCGGAGTACCCGGTGGCCTTTCACTATGTGCACAGCAAGCAGCTG
TACGTGTACGACTACTTCAACTACCAGTTCCAGCTCTCCGGAAGGGCGCA
GGTGGCGGAACGGCTGCCCAAGAAGATCCGGGAGGAGGAGCTGGTCATCC
CCGAGAGCGACAATCCGGTGTCCTAGGCAGGAGCCAGCCATTCTGCCACT
TCAGCAGCAGCAATCTCAAGTCCATATCTACATATTTTCCATCCTTTTTT
TTTTGTGTGTGCTTATCGTGTATTTAATATATTATGGGCACAAGGCGAAC
GTGCCAAGGCTGCCAGATGCTGTCCTGTTGCGACTCCTTGTCCTTGCCCG
ATCCACGTCCTAAAAAAAAAAAAAAAA

RE01689.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
tgy-RD 1812 tgy-RD 1..1613 1..1612 8025 99.9 Plus
tgy.a 1916 tgy.a 564..1326 850..1612 3815 100 Plus
tgy-RC 1817 tgy-RC 785..1547 850..1612 3815 100 Plus
tgy.a 1916 tgy.a 10..563 1..554 2770 100 Plus
tgy-RC 1817 tgy-RC 231..784 1..554 2770 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19015211..19016169 958..1 4580 98.7 Minus
chrX 22417052 chrX 19014123..19014496 1611..1240 1790 99.2 Minus
chrX 22417052 chrX 19014862..19015145 1240..957 1405 99.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:25:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19126355..19127313 958..1 4745 99.9 Minus
X 23542271 X 19125273..19125645 1612..1240 1865 100 Minus
X 23542271 X 19126006..19126289 1240..957 1420 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:16:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19134453..19135411 958..1 4755 99.8 Minus
X 23527363 X 19133371..19133743 1612..1240 1865 100 Minus
X 23527363 X 19134104..19134387 1240..957 1420 100 Minus
Blast to na_te.dros performed 2019-03-16 19:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Galileo 2304 Dbuz\Galileo GALILEO 2304bp 743..796 676..625 130 74.1 Minus

RE01689.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:14:54 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19014862..19015143 959..1240 99 <- Minus
chrX 19014123..19014495 1241..1611 99 <- Minus
chrX 19015211..19016169 1..958 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:46:00 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
tgy-RC 1..545 10..554 100 == Plus
tgy-RC 546..1122 850..1426 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:19:41 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
tgy-RC 1..545 10..554 100 == Plus
tgy-RC 546..1122 850..1426 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:33:42 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
tgy-RC 1..545 10..554 100 == Plus
tgy-RC 546..1122 850..1426 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:45:51 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
tgy-RC 1..545 10..554 100 == Plus
tgy-RC 546..1122 850..1426 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:31 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
tgy-RC 1..545 10..554 100 == Plus
tgy-RC 546..1122 850..1426 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:53:10 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
tgy-RD 1..1612 1..1611 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:19:41 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
tgy-RD 1..1612 1..1611 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:42 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
tgy-RD 1..1612 1..1611 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:45:51 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
tgy-RD 1..1612 1..1611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:31 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
tgy-RC 4..557 1..554 100 == Plus
tgy-RC 558..1319 850..1611 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:14:54 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
X 19126006..19126287 959..1240 100 <- Minus
X 19126355..19127313 1..958 99   Minus
X 19125274..19125644 1241..1611 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:14:54 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
X 19126006..19126287 959..1240 100 <- Minus
X 19126355..19127313 1..958 99   Minus
X 19125274..19125644 1241..1611 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:14:54 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
X 19126006..19126287 959..1240 100 <- Minus
X 19126355..19127313 1..958 99   Minus
X 19125274..19125644 1241..1611 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:42 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19019307..19019677 1241..1611 100 <- Minus
arm_X 19020039..19020320 959..1240 100 <- Minus
arm_X 19020388..19021346 1..958 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:22:14 Download gff for RE01689.complete
Subject Subject Range Query Range Percent Splice Strand
X 19133372..19133742 1241..1611 100 <- Minus
X 19134104..19134385 959..1240 100 <- Minus
X 19134453..19135411 1..958 99   Minus

RE01689.pep Sequence

Translation from 0 to 578

> RE01689.pep
SVSMAGEYIILENSSTYPGFHSSSNGLANGMYRSAQRISTDRLVLLILLV
STTVIGLFAYWDVMVLNAGALPLSRGTSSVDYMEPGLRNETLAEKMHREV
RVLCWVLTTPKYHKTRAIHVLRTWGKRCNKIYFMTSEPDDELPTVVLTKP
DRYEMLWGKTKEAFVHIHEQMRHEADWFIKADDDTYVKDSDS*

RE01689.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 09:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16008-PA 358 GF16008-PA 1..168 4..187 576 59.8 Plus
Dana\GF15693-PA 390 GF15693-PA 89..186 89..186 311 55.1 Plus
Dana\GF14913-PA 452 GF14913-PA 68..191 65..187 305 48.4 Plus
Dana\GF24418-PA 341 GF24418-PA 8..150 44..187 245 33.3 Plus
Dana\GF14985-PA 384 GF14985-PA 78..173 92..187 239 44.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 09:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18081-PA 374 GG18081-PA 1..185 4..187 780 83.2 Plus
Dere\GG24047-PA 388 GG24047-PA 88..185 89..186 317 57.1 Plus
Dere\GG10669-PA 453 GG10669-PA 57..184 57..187 300 45 Plus
Dere\GG24890-PA 386 GG24890-PA 76..173 90..187 284 51 Plus
Dere\GG14746-PA 339 GG14746-PA 49..151 85..187 243 44.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 09:19:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25080-PA 308 GH25080-PA 19..176 44..187 323 41.8 Plus
Dgri\GH23406-PA 327 GH23406-PA 45..143 89..187 319 56.6 Plus
Dgri\GH25083-PA 339 GH25083-PA 30..128 89..187 314 55.6 Plus
Dgri\GH25082-PA 347 GH25082-PA 45..142 89..186 313 56.1 Plus
Dgri\GH10852-PA 339 GH10852-PA 30..128 89..187 311 55.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
tgy-PE 373 CG7440-PE 1..184 4..187 974 99.5 Plus
tgy-PC 373 CG7440-PC 1..184 4..187 974 99.5 Plus
C1GalTA-PA 388 CG9520-PA 88..185 89..186 321 57.1 Plus
C1GalTA-PC 388 CG9520-PC 88..185 89..186 321 57.1 Plus
C1GalTA-PB 388 CG9520-PB 88..185 89..186 321 57.1 Plus
CG8708-PC 444 CG8708-PC 77..174 89..186 293 54.1 Plus
CG8708-PD 450 CG8708-PD 83..180 89..186 293 54.1 Plus
CG8708-PB 450 CG8708-PB 83..180 89..186 293 54.1 Plus
CG2975-PA 385 CG2975-PA 74..170 90..186 277 50.5 Plus
CG34057-PB 344 CG34057-PB 54..156 85..187 249 44.7 Plus
CG34057-PA 355 CG34057-PA 65..167 85..187 249 44.7 Plus
CG34056-PA 341 CG34056-PA 10..148 43..187 233 35.9 Plus
CG18558-PB 588 CG18558-PB 309..409 89..186 232 45.5 Plus
CG2983-PB 344 CG2983-PB 72..161 99..187 219 48.9 Plus
CG3119-PB 184 CG3119-PB 62..150 101..187 209 46.1 Plus
CG3119-PA 355 CG3119-PA 62..150 101..187 209 46.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 09:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15728-PA 376 GI15728-PA 33..185 27..187 483 56.4 Plus
Dmoj\GI12045-PA 391 GI12045-PA 71..186 71..186 321 51.7 Plus
Dmoj\GI12912-PA 264 GI12912-PA 37..137 87..187 307 53.5 Plus
Dmoj\GI17446-PA 390 GI17446-PA 65..175 73..186 306 51.8 Plus
Dmoj\GI12068-PA 352 GI12068-PA 43..141 89..187 296 55.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 09:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14674-PA 303 GL14674-PA 3..124 60..187 500 72.1 Plus
Dper\GL25549-PA 390 GL25549-PA 88..185 89..186 313 57.1 Plus
Dper\GL26713-PA 452 GL26713-PA 91..189 89..187 306 55.6 Plus
Dper\GL15447-PA 379 GL15447-PA 80..174 92..187 280 52.1 Plus
Dper\GL15448-PA 597 GL15448-PA 296..417 71..187 267 45.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 09:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20354-PA 369 GA20354-PA 1..180 4..187 554 58.6 Plus
Dpse\GA21851-PA 390 GA21851-PA 88..185 89..186 313 57.1 Plus
Dpse\GA29031-PA 452 GA29031-PA 91..189 89..187 306 55.6 Plus
Dpse\GA28803-PA 347 GA28803-PA 80..174 92..187 281 52.1 Plus
Dpse\GA14990-PA 597 GA14990-PA 296..417 71..187 268 45.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 09:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22770-PA 373 GM22770-PA 1..184 4..187 934 93.5 Plus
Dsec\GM12650-PA 379 GM12650-PA 79..176 89..186 316 57.1 Plus
Dsec\GM20714-PA 446 GM20714-PA 86..184 89..187 293 53.5 Plus
Dsec\GM18370-PA 383 GM18370-PA 78..172 93..187 276 50.5 Plus
Dsec\GM14364-PA 335 GM14364-PA 45..147 85..187 243 43.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 09:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24465-PA 373 GD24465-PA 1..184 4..187 943 94.6 Plus
Dsim\GD22375-PA 388 GD22375-PA 88..185 89..186 317 57.1 Plus
Dsim\GD10181-PA 446 GD10181-PA 86..184 89..187 292 53.5 Plus
Dsim\GD23186-PA 386 GD23186-PA 78..172 93..187 276 51.6 Plus
Dsim\GD22797-PA 588 GD22797-PA 309..410 89..187 233 46.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 09:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15256-PA 373 GJ15256-PA 35..186 29..187 511 60.6 Plus
Dvir\GJ14135-PA 386 GJ14135-PA 71..186 71..186 308 49.1 Plus
Dvir\GJ14139-PA 441 GJ14139-PA 80..178 89..187 306 55.6 Plus
Dvir\GJ14138-PA 335 GJ14138-PA 51..147 91..187 305 56.7 Plus
Dvir\GJ13625-PA 339 GJ13625-PA 3..147 42..187 254 38.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 09:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25098-PA 373 GK25098-PA 1..182 4..187 521 54.8 Plus
Dwil\GK24754-PA 403 GK24754-PA 81..179 89..187 326 58.6 Plus
Dwil\GK24753-PA 440 GK24753-PA 86..184 89..187 311 56.6 Plus
Dwil\GK14790-PA 390 GK14790-PA 71..186 71..186 310 50.9 Plus
Dwil\GK14791-PA 371 GK14791-PA 71..186 71..186 309 50.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 09:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15477-PA 375 GE15477-PA 1..186 4..187 818 82.3 Plus
Dyak\GE10709-PA 388 GE10709-PA 88..185 89..186 317 57.1 Plus
Dyak\GE23251-PA 451 GE23251-PA 86..184 89..187 297 54.5 Plus
Dyak\GE18184-PA 385 GE18184-PA 74..171 90..187 278 51 Plus
Dyak\GE21108-PA 339 GE21108-PA 49..151 85..187 238 43.7 Plus

RE01689.hyp Sequence

Translation from 0 to 578

> RE01689.hyp
SVSMAGEYIILENSSTYPGFHSSSNGLANGMYRSAQRISTDRLVLLILLV
STTVIGLFAYWDVMVLNAGALPLSRGTSSVDYMEPGLRNETLAEKMHREV
RVLCWVLTTPKYHKTRAIHVLRTWGKRCNKIYFMTSEPDDELPTVVLTKP
DRYEMLWGKTKEAFVHIHEQMRHEADWFIKADDDTYVKDSDS*

RE01689.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
tgy-PE 373 CG7440-PE 1..184 4..187 974 99.5 Plus
tgy-PC 373 CG7440-PC 1..184 4..187 974 99.5 Plus
C1GalTA-PA 388 CG9520-PA 88..185 89..186 321 57.1 Plus
C1GalTA-PC 388 CG9520-PC 88..185 89..186 321 57.1 Plus
C1GalTA-PB 388 CG9520-PB 88..185 89..186 321 57.1 Plus