Clone RE01730 Report

Search the DGRC for RE01730

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:17
Well:30
Vector:pFlc-1
Associated Gene/TranscriptSwim-RA
Protein status:RE01730.pep: gold
Preliminary Size:1979
Sequenced Size:2072

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3074 2002-01-01 Sim4 clustering to Release 2
CG3074 2002-04-26 Blastp of sequenced clone
CG3074 2003-01-01 Sim4 clustering to Release 3
CG3074 2008-04-29 Release 5.5 accounting
CG3074 2008-08-15 Release 5.9 accounting
CG3074 2008-12-18 5.12 accounting

Clone Sequence Records

RE01730.complete Sequence

2072 bp (2072 high quality bases) assembled on 2002-04-26

GenBank Submission: AY113377

> RE01730.complete
AGTCTCAGTTTGGGTTCCAAATCTGTCGCGTGCGGATCAGATCAGTCTTT
ACAGTTTATGCCCGATTTGACGCTAATTTCAGCTGACTTTTCGTCTGGCT
GGCTAATAGTGCGCGAGTTTATCTTTAACGTTTGAATCTCAGTTTCGGCG
ATTACCAACTGAATTGTGTGTGACAGTTGCAGATTAGAGGTCGTCCAAAG
AGCCATGTCCATCAAGTGCGTCCACCTGGTGGGCCTTCTGGTCCTGCTAA
TGGGCGGGGCCAACGCCCTTTTCGATCACACACTGAAAAGGGACTTCCCA
GGTCCTTACTGCGCACGGGAGAACACCTGCTGCAAGGATCGGCACGACGG
CTGCTCGGTGCCCATCTCCAACACTCTATGCTACTGCGATGAGTTCTGCG
ATCGGGACGACTCCAGCGACTGCTGTCCCGACTACCGCTCCTTCTGCATC
GGCGAGGTGGACCCAATCATCTCCTGCGAGCACAACGGCGTCTACTTCAG
CAAGTACAATACCACGTGGGACAACTGCAACGAGTGCCGCTGCCTGGAGG
GCGGCAGCGTGCAGTGCGACGAGGATCTGTGCCTCACCGACGACGCGATT
GTGCACAGCGTGAACTCGATTCACAGACTGGGCTGGTCTGCCCGCAAGTA
TGACCAGTGGTGGGGTCGCAAGTACTCCGAGGGACTAAAGCTGCGTCTGG
GCACCAAGGAGCCCACGTACCGCGTGAAGGCGATGACGCGTCTAAAGAAT
CCCACCGATGGCCTGCCCAGCTCCTTCAACGCACTGGACAAGTGGTCCAG
CTACATCTCCGAGGTGCCCGACCAGGGCTGGTGCGGTGCCTCATGGGTGC
TGTCCACCACCTCGGTGGCCAGCGATCGCTTCGCCATCCAGAGCAAGGGC
AAGGAGAATGTCCAGCTGTCCGCCCAGAACATCCTCTCCTGCACACGCCG
CCAGCAGGGCTGCGAGGGTGGCCACTTGGACGCCGCCTGGCGCTACTTGC
ACAAGAAGGGCGTGGTCGACGAGAACTGCTATCCGTACACACAGCACCGC
GACACCTGCAAGATCCGCCACAACAGTCGCTCTCTGAGGGCCAATGGATG
CCAAAAGCCGGTCAATGTGGACAGGGACTCCCTCTACACGGTGGGTCCGG
CCTACAGCTTGAACCGGGAAGCCGACATTATGGCCGAGATCTTCCACTCC
GGTCCCGTACAGGCCACCATGCGGGTTAACAGGGACTTCTTCGCCTACTC
AGGCGGTGTGTACCGCGAGACAGCAGCCAACCGAAAGGCGCCAACTGGGT
TCCACTCGGTGAAGTTGGTGGGCTGGGGAGAGGAGCACAATGGTGAAAAG
TATTGGATCGCAGCGAACTCGTGGGGATCTTGGTGGGGCGAGCATGGCTA
CTTCCGCATCCTACGAGGCTCCAACGAGTGCGGCATCGAGGAGTACGTGC
TGGCCTCCTGGCCCTACGTCTACAGCTACTACAATGTGAAGTCGGCTTAA
GGGGAATCAGAGGGCCTACGCCTCGCACCGAGCAATCTCGAGCTATGCAG
AAATTAAAACAAATTTATCTCATGCTTTAAAATTTTCCATTTGCTGCTAT
ATGGCACTCAAAGTGAATTAGGCGCTTCTATCTGTAATGTTTATGCTTAG
AACCTAGTGACTAAAAATATTAGCTTTAAGTTGCGCATACGCACCAAGTT
AACTGCCCGCAGTACCAGGCCTGTCCCTAACCACTCTCACCCACTAACTG
GTCTCGAAGCAACACGAAACTGCCACCCAACACCGCTCCATCCCCCGAAT
ACTGCCACACCAATCAGAGGAACCGGAAGGACACGAACATCCAGCACCCT
TGTAGCGCATGTGATTGATGGAAGGACGAATAAGGACGCGGAGCTAGATT
CGATCGGCGAGAGTCTGTAGGATATGTACGAGTGCGAACTCATCGTGTAT
TGTAAATGGAAGCTAAGTTAACTGATTGATTGATAGACCGATGGAAATTA
GTCGGCTTATATATTTTTAATAAACGAATTACTTTACATGTTTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

RE01730.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3074-RB 2245 CG3074-RB 201..2244 1..2044 10220 100 Plus
CG3074-RA 2002 CG3074-RA 134..2001 177..2044 9340 100 Plus
Vps35-RA 3245 Vps35-RA 3119..3245 2044..1918 635 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 18077132..18078114 1356..371 4730 98.9 Minus
chr2R 21145070 chr2R 18076364..18077054 2043..1356 3285 98.7 Minus
chr2R 21145070 chr2R 18078209..18078405 370..174 970 99.5 Minus
chr2R 21145070 chr2R 18089048..18089223 176..1 850 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:25:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:39:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22190582..22191567 1356..371 4930 100 Minus
2R 25286936 2R 22189816..22190504 2044..1356 3445 100 Minus
2R 25286936 2R 22191662..22191858 370..174 985 100 Minus
2R 25286936 2R 22202490..22202665 176..1 880 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 22191781..22192766 1356..371 4930 100 Minus
2R 25260384 2R 22191015..22191703 2044..1356 3445 100 Minus
2R 25260384 2R 22192861..22193057 370..174 985 100 Minus
2R 25260384 2R 22203689..22203864 176..1 880 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:39:14 has no hits.

RE01730.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:40:21 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 18076364..18077053 1357..2043 98 <- Minus
chr2R 18077132..18078114 371..1356 98 <- Minus
chr2R 18078209..18078402 177..370 99 <- Minus
chr2R 18089048..18089223 1..176 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:24:34 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
CG3074-RA 1..1296 205..1500 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:56:18 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
CG3074-RA 1..1296 205..1500 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:15:32 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
Swim-RB 1..1296 205..1500 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:49:35 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
CG3074-RA 1..1296 205..1500 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:45:09 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
Swim-RB 1..1296 205..1500 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:24:34 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
CG3074-RB 9..2047 1..2039 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:56:18 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
CG3074-RB 9..2047 1..2039 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:15:32 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
Swim-RB 7..2049 1..2043 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:49:36 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
CG3074-RB 9..2047 1..2039 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:45:09 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
Swim-RB 7..2049 1..2043 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:40:21 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22190582..22191567 371..1356 100 <- Minus
2R 22189817..22190503 1357..2043 100 <- Minus
2R 22191662..22191855 177..370 100 <- Minus
2R 22202490..22202665 1..176 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:40:21 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22190582..22191567 371..1356 100 <- Minus
2R 22189817..22190503 1357..2043 100 <- Minus
2R 22191662..22191855 177..370 100 <- Minus
2R 22202490..22202665 1..176 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:40:21 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22190582..22191567 371..1356 100 <- Minus
2R 22189817..22190503 1357..2043 100 <- Minus
2R 22191662..22191855 177..370 100 <- Minus
2R 22202490..22202665 1..176 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:15:32 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18077322..18078008 1357..2043 100 <- Minus
arm_2R 18078087..18079072 371..1356 100 <- Minus
arm_2R 18079167..18079360 177..370 100 <- Minus
arm_2R 18089995..18090170 1..176 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:21:30 Download gff for RE01730.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22191016..22191702 1357..2043 100 <- Minus
2R 22191781..22192766 371..1356 100 <- Minus
2R 22192861..22193054 177..370 100 <- Minus
2R 22203689..22203864 1..176 100   Minus

RE01730.pep Sequence

Translation from 204 to 1499

> RE01730.pep
MSIKCVHLVGLLVLLMGGANALFDHTLKRDFPGPYCARENTCCKDRHDGC
SVPISNTLCYCDEFCDRDDSSDCCPDYRSFCIGEVDPIISCEHNGVYFSK
YNTTWDNCNECRCLEGGSVQCDEDLCLTDDAIVHSVNSIHRLGWSARKYD
QWWGRKYSEGLKLRLGTKEPTYRVKAMTRLKNPTDGLPSSFNALDKWSSY
ISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKENVQLSAQNILSCTRRQ
QGCEGGHLDAAWRYLHKKGVVDENCYPYTQHRDTCKIRHNSRSLRANGCQ
KPVNVDRDSLYTVGPAYSLNREADIMAEIFHSGPVQATMRVNRDFFAYSG
GVYRETAANRKAPTGFHSVKLVGWGEEHNGEKYWIAANSWGSWWGEHGYF
RILRGSNECGIEEYVLASWPYVYSYYNVKSA*

RE01730.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:24:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12327-PA 431 GF12327-PA 1..430 1..431 2005 83.5 Plus
Dana\GF22391-PA 342 GF22391-PA 18..339 121..420 371 31.4 Plus
Dana\GF13132-PA 392 GF13132-PA 148..383 151..411 278 31.5 Plus
Dana\GF17600-PA 333 GF17600-PA 64..333 140..422 273 29.7 Plus
Dana\GF13722-PA 417 GF13722-PA 188..417 175..422 269 32.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20712-PA 431 GG20712-PA 1..431 1..431 2151 91 Plus
Dere\GG19486-PA 340 GG19486-PA 82..338 182..420 332 33.1 Plus
Dere\GG20691-PA 378 GG20691-PA 139..378 168..422 272 30.6 Plus
Dere\GG20414-PA 341 GG20414-PA 112..341 175..422 263 31.6 Plus
Dere\GG10644-PA 344 GG10644-PA 136..343 200..422 230 31.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20676-PA 432 GH20676-PA 1..431 1..430 1855 78.2 Plus
Dgri\GH17748-PA 340 GH17748-PA 88..338 187..420 329 33.9 Plus
Dgri\GH22826-PA 340 GH22826-PA 123..340 187..422 259 32 Plus
Dgri\GH23906-PA 358 GH23906-PA 143..349 187..411 259 31 Plus
Dgri\GH21411-PA 391 GH21411-PA 176..382 187..411 259 31 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Swim-PA 431 CG3074-PA 1..431 1..431 2415 100 Plus
Swim-PB 431 CG3074-PB 1..431 1..431 2415 100 Plus
CtsB1-PC 340 CG10992-PC 82..338 182..420 366 35.2 Plus
CtsB1-PA 340 CG10992-PA 82..338 182..420 366 35.2 Plus
CG4847-PE 390 CG4847-PE 139..390 157..422 287 30.9 Plus
CG4847-PC 390 CG4847-PC 139..390 157..422 287 30.9 Plus
CG4847-PA 390 CG4847-PA 139..390 157..422 287 30.9 Plus
CG4847-PD 420 CG4847-PD 169..420 157..422 287 30.9 Plus
Cp1-PD 249 CG6692-PD 44..249 201..422 279 32.2 Plus
Cp1-PE 338 CG6692-PE 133..338 201..422 279 32.2 Plus
Cp1-PA 341 CG6692-PA 136..341 201..422 279 32.2 Plus
Cp1-PC 371 CG6692-PC 166..371 201..422 279 32.2 Plus
CG12163-PB 475 CG12163-PB 255..467 187..413 242 29.6 Plus
CG12163-PA 614 CG12163-PA 394..606 187..413 242 29.6 Plus
CG11459-PB 336 CG11459-PB 129..327 200..411 238 30.6 Plus
CG11459-PA 336 CG11459-PA 129..327 200..411 238 30.6 Plus
CG6347-PA 352 CG6347-PA 152..343 210..411 225 32.7 Plus
CG5367-PA 338 CG5367-PA 133..332 197..414 202 29.3 Plus
26-29-p-PA 549 CG8947-PA 328..540 185..411 197 27.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19039-PA 432 GI19039-PA 1..431 1..431 1921 82.1 Plus
Dmoj\GI15503-PA 342 GI15503-PA 21..340 122..420 336 30.1 Plus
Dmoj\GI21205-PA 339 GI21205-PA 98..339 161..422 261 29.6 Plus
Dmoj\GI18587-PA 366 GI18587-PA 151..357 187..411 247 31.4 Plus
Dmoj\GI18640-PA 243 GI18640-PA 15..234 181..411 235 32.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16940-PA 433 GL16940-PA 1..433 1..431 1965 82.2 Plus
Dper\GL17172-PA 341 GL17172-PA 136..341 201..422 272 33.9 Plus
Dper\GL19846-PA 329 GL19846-PA 13..329 118..422 271 28.1 Plus
Dper\GL11434-PA 372 GL11434-PA 156..363 187..411 271 31.2 Plus
Dper\GL22196-PA 627 GL22196-PA 390..624 181..418 228 27.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:24:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15908-PA 433 GA15908-PA 1..433 1..431 1966 82.2 Plus
Dpse\GA10694-PA 338 GA10694-PA 13..336 118..420 338 30.6 Plus
Dpse\GA18475-PA 372 GA18475-PA 156..363 187..411 269 31.7 Plus
Dpse\GA25021-PB 319 GA25021-PB 114..319 201..422 268 33 Plus
Dpse\GA25021-PA 341 GA25021-PA 136..341 201..422 266 33 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15657-PA 431 GM15657-PA 1..431 1..431 2261 97 Plus
Dsec\GM17589-PA 340 GM17589-PA 23..338 127..420 350 31.8 Plus
Dsec\GM21790-PA 382 GM21790-PA 66..382 87..422 288 28.3 Plus
Dsec\GM21500-PA 341 GM21500-PA 112..341 175..422 266 32 Plus
Dsec\GM10654-PA 615 GM10654-PA 395..612 187..418 230 29 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:24:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25141-PA 484 GD25141-PA 1..426 1..426 2260 97.7 Plus
Dsim\GD15875-PA 340 GD15875-PA 23..338 127..420 342 31.2 Plus
Dsim\GD11280-PA 382 GD11280-PA 66..382 87..422 288 28.3 Plus
Dsim\GD10995-PA 341 GD10995-PA 112..341 175..422 262 31.6 Plus
Dsim\GD10987-PA 352 GD10987-PA 152..343 210..411 217 32.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20006-PA 432 GJ20006-PA 1..432 1..431 1959 83.3 Plus
Dvir\GJ19262-PA 338 GJ19262-PA 86..336 187..420 335 34.5 Plus
Dvir\GJ20806-PA 339 GJ20806-PA 134..339 201..422 264 32.5 Plus
Dvir\GJ20585-PA 333 GJ20585-PA 116..333 187..422 254 30.3 Plus
Dvir\GJ20385-PA 370 GJ20385-PA 155..361 187..411 246 30.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20838-PA 432 GK20838-PA 3..432 1..431 1918 81.2 Plus
Dwil\GK24603-PA 341 GK24603-PA 24..339 127..420 390 33.1 Plus
Dwil\GK16352-PA 340 GK16352-PA 73..338 173..420 355 33.9 Plus
Dwil\GK19626-PA 341 GK19626-PA 136..341 201..422 258 33.3 Plus
Dwil\GK22908-PA 381 GK22908-PA 104..381 132..422 256 28.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11695-PA 431 GE11695-PA 1..431 1..431 2114 92.6 Plus
Dyak\GE16138-PA 340 GE16138-PA 23..338 127..420 337 30.9 Plus
Dyak\GE11675-PA 384 GE11675-PA 133..384 157..422 270 30.2 Plus
Dyak\GE12574-PA 341 GE12574-PA 112..341 175..422 264 31.6 Plus
Dyak\GE10178-PA 336 GE10178-PA 129..336 200..422 223 30.1 Plus

RE01730.hyp Sequence

Translation from 204 to 1499

> RE01730.hyp
MSIKCVHLVGLLVLLMGGANALFDHTLKRDFPGPYCARENTCCKDRHDGC
SVPISNTLCYCDEFCDRDDSSDCCPDYRSFCIGEVDPIISCEHNGVYFSK
YNTTWDNCNECRCLEGGSVQCDEDLCLTDDAIVHSVNSIHRLGWSARKYD
QWWGRKYSEGLKLRLGTKEPTYRVKAMTRLKNPTDGLPSSFNALDKWSSY
ISEVPDQGWCGASWVLSTTSVASDRFAIQSKGKENVQLSAQNILSCTRRQ
QGCEGGHLDAAWRYLHKKGVVDENCYPYTQHRDTCKIRHNSRSLRANGCQ
KPVNVDRDSLYTVGPAYSLNREADIMAEIFHSGPVQATMRVNRDFFAYSG
GVYRETAANRKAPTGFHSVKLVGWGEEHNGEKYWIAANSWGSWWGEHGYF
RILRGSNECGIEEYVLASWPYVYSYYNVKSA*

RE01730.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
Swim-PA 431 CG3074-PA 1..431 1..431 2415 100 Plus
Swim-PB 431 CG3074-PB 1..431 1..431 2415 100 Plus
CtsB1-PC 340 CG10992-PC 82..338 182..420 366 35.2 Plus
CtsB1-PA 340 CG10992-PA 82..338 182..420 366 35.2 Plus
CG4847-PE 390 CG4847-PE 139..390 157..422 287 30.9 Plus