Clone RE01736 Report

Search the DGRC for RE01736

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:17
Well:36
Vector:pFlc-1
Associated Gene/TranscriptHs3st-B-RA
Protein status:RE01736.pep: gold
Preliminary Size:1155
Sequenced Size:2021

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7890 2002-01-01 Sim4 clustering to Release 2
CG7890 2002-05-17 Blastp of sequenced clone
CG7890 2003-01-01 Sim4 clustering to Release 3
Hs3st-B 2008-04-29 Release 5.5 accounting
Hs3st-B 2008-08-15 Release 5.9 accounting
Hs3st-B 2008-12-18 5.12 accounting

Clone Sequence Records

RE01736.complete Sequence

2021 bp (2021 high quality bases) assembled on 2002-05-17

GenBank Submission: AY119100

> RE01736.complete
AGTGGTCCGGGGCGACTGAGTGGCAATGGAATTTGACGGAGCGCTCGGAA
CCGATTATACCGCCAGATGCGAGACACGGCAGCCACTAGCGCCCAGCCAG
CCATGATTGTGATGAGCATCTGGTGCAGCAGCCTCAGCCTGAGCAGCCGC
AGCCTGGCCATCGCCCTGGTGATCTGCGTGACTCTGGTCTACTTCTCCTA
CAGCTTCAATGCCTGCCTCCTGGCCAGCATCAGTCGCAGTCTGCAGCAGA
GCAACTTACGCAATCTACTGGCGCTGACCTCCTCGCCCCGCAACGAGACC
AATAACGCCGCCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAACAG
CTCATCCACCACCGGTGCTCCGCCGGCACAGACGGTTACTAGCAGCCTGG
ATGGGGCGCCCAAGTATCAGCTGCTCCGTCAGCAGGGGCTCCGACCATCG
CGCCACCTGCCCGACACGCTCATCATTGGCGTGAAGAAGAGCGGGACGCG
GGCGCTGCTCGAGTTCATCCGCCTGCATCCGGACGTGCGGGCCGCCGGTT
CGGAGGTGCACTTCTTCGACAGGCACTACCAGCGGGGACTACGCTGGTAC
CGCCACCACATGCCGTACACTATCGAGGGCCAGATCACCATGGAGAAGAC
GCCCAGCTACTTCGTCACCAAGGAGGTGCCGCAGCGCGTCTACCACATGA
ATCCGGCAACAAAATTACTGATTGTGGTGCGGGATCCGGTGACGCGGGCC
ATCTCCGACTACACACAGGCGGCGAGCAAGAAGGCGGACATGAAGCTCTT
CGAGCAGCTGGCCTTCGTCAACGGTAGCTACTCGGTGGTGGACACCAACT
GGGGCCCGGTGAAGATCGGCGTCTATGCACGCTATCTGGAGCGCTGGCTG
CTCTACTTTCCGCTCTCGCAGCTGCTCTTCATCAGCGGCGAGCGGCTGAT
CATGGATCCCGCCTACGAGATTGGACGCGTACAGGACTTCCTCGGTCTGA
AGCGCGTGGTCACCGAGAAGCACTTCTACTTCAATGCCACCAAGGGCTTC
CCCTGCCTCTTCAAGTCGGAGGCACGCTCCACGCCCCACTGTCTGGGTAA
GACCAAGGGGCGCAACCATCCGCACATAGATCCCGGGGCCATCGAGCGCC
TCCGGGAGTTCTACCGGCCCTTCAACAACAAGTTCTACCAGCTGACGGGC
ATCAACTTCGCCTGGCCATAGGATCCACGGCTGGGTGAGTAGACGGAACT
GGGATACGTGCAAGGCTAGTACCGAAATGGATTGGATTGGCCAGAGGCTA
GGCACCTTCACTGATCTGCTCAATTTACATATCACATCCATCCCCATTGG
AGTATGCTTGACTATCCCTAAGCCCTAATCCCTAATATCTGGTATCAATT
TCCGTTTCAGCGGGCGTGAAATGAATGGAGTTTGAGAATAGGAGATATTG
TTGTTGCTGGCCACGGCAACGGACTGATATTGTTGATTGCATTTTTGATA
CATATAATTGTACTTATATATAGTATATACACACACACATAAAGTTAGTG
CTCAATTAATTGTAGCTTTATCAGGAGACAAATTCAACGAAGTGCGCAAC
CTGAAAAGTCCGCACTCAAACAATACGGTTCCTCACTCCAATTCAATTCA
AATGAAATGAAATGAAATGAAACTCACTTTTCCCACTATGCTCGAATGTC
AGGCAGTTGGACGTGGAGGAGCCACGTTCGATCCGAGATGGACATGGTTC
CCCCGTCCGCTGGGCACACACATTGCTATGTACTACCACTACCTAAGATC
ATTATACCTAAGATCATTATGTGCATTTATATACAAGAATAGTGAAAAAA
TAGAGCTTACTACGAAATTCCTACAGTCTCCTAAACTAAACATATACAAA
ATATTGTATGCATAGTTCCAACAATTTCAATTGCATGACTCAACCAATAC
GATTGCTTAGCCAATTTCAATTAAAAAACAAACTAAATAAATCGACCTTA
AATCCAAAAAAAAAAAAAAAA

RE01736.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-RA 2151 Hs3st-B-RA 138..2141 1..2004 9990 99.9 Plus
Hs3st-B.a 2635 Hs3st-B.a 622..2625 1..2004 9990 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19139668..19140948 714..2004 6255 99.1 Plus
chrX 22417052 chrX 19138649..19139116 246..713 2340 100 Plus
chrX 22417052 chrX 19137994..19138242 1..249 1230 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:25:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19250754..19252044 714..2004 6440 99.9 Plus
X 23542271 X 19249735..19250202 246..713 2340 100 Plus
X 23542271 X 19249075..19249323 1..249 1230 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19258852..19260142 714..2004 6440 99.9 Plus
X 23527363 X 19257833..19258300 246..713 2340 100 Plus
X 23527363 X 19257173..19257421 1..249 1230 99.5 Plus
Blast to na_te.dros performed on 2019-03-15 20:04:27 has no hits.

RE01736.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:05:26 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19137994..19138242 1..249 99 -> Plus
chrX 19138653..19139116 250..713 91 -> Plus
chrX 19139668..19140948 714..2005 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:46:02 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 1..1155 67..1221 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:48:37 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 1..1155 67..1221 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:06:16 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 1..1155 67..1221 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:41:09 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 1..1155 67..1221 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:14:59 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 1..1155 67..1221 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:25:17 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 1..2004 1..2005 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:48:37 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 1..2004 1..2005 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:06:16 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 88..2091 1..2005 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:41:09 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 1..2004 1..2005 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:14:59 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
Hs3st-B-RA 88..2091 1..2005 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:26 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
X 19249075..19249323 1..249 99 -> Plus
X 19249739..19250202 250..713 100 -> Plus
X 19250754..19252044 714..2005 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:26 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
X 19249075..19249323 1..249 99 -> Plus
X 19249739..19250202 250..713 100 -> Plus
X 19250754..19252044 714..2005 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:26 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
X 19249075..19249323 1..249 99 -> Plus
X 19249739..19250202 250..713 100 -> Plus
X 19250754..19252044 714..2005 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:06:16 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19143108..19143356 1..249 99 -> Plus
arm_X 19143772..19144235 250..713 100 -> Plus
arm_X 19144787..19146077 714..2005 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:13:27 Download gff for RE01736.complete
Subject Subject Range Query Range Percent Splice Strand
X 19257173..19257421 1..249 99 -> Plus
X 19257837..19258300 250..713 100 -> Plus
X 19258852..19260142 714..2005 99   Plus

RE01736.pep Sequence

Translation from 66 to 1220

> RE01736.pep
MRDTAATSAQPAMIVMSIWCSSLSLSSRSLAIALVICVTLVYFSYSFNAC
LLASISRSLQQSNLRNLLALTSSPRNETNNAANSSSSNSSSSRNSSSTTG
APPAQTVTSSLDGAPKYQLLRQQGLRPSRHLPDTLIIGVKKSGTRALLEF
IRLHPDVRAAGSEVHFFDRHYQRGLRWYRHHMPYTIEGQITMEKTPSYFV
TKEVPQRVYHMNPATKLLIVVRDPVTRAISDYTQAASKKADMKLFEQLAF
VNGSYSVVDTNWGPVKIGVYARYLERWLLYFPLSQLLFISGERLIMDPAY
EIGRVQDFLGLKRVVTEKHFYFNATKGFPCLFKSEARSTPHCLGKTKGRN
HPHIDPGAIERLREFYRPFNNKFYQLTGINFAWP*

RE01736.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:34:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15993-PA 374 GF15993-PA 1..374 13..384 1766 93.6 Plus
Dana\GF11113-PA 621 GF11113-PA 257..371 128..240 387 63.5 Plus
Dana\GF11113-PA 621 GF11113-PA 475..619 235..384 352 43.7 Plus
Dana\GF23539-PA 1052 GF23539-PA 762..1031 131..376 294 30.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19219-PA 371 GG19219-PA 1..371 13..384 1952 97.8 Plus
Dere\GG21921-PA 613 GG21921-PA 248..362 128..240 386 63.5 Plus
Dere\GG21921-PA 613 GG21921-PA 467..611 235..384 351 43.7 Plus
Dere\GG15349-PA 859 GG15349-PA 569..838 131..376 291 31.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:34:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24726-PA 384 GH24726-PA 4..384 17..384 1707 83.3 Plus
Dgri\GH23421-PA 477 GH23421-PA 141..257 126..240 383 62.4 Plus
Dgri\GH23421-PA 477 GH23421-PA 339..475 243..384 343 45.5 Plus
Dgri\GH15162-PA 1086 GH15162-PA 796..1065 131..376 294 30.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-PB 384 CG7890-PB 1..384 1..384 1998 100 Plus
Hs3st-B-PA 384 CG7890-PA 1..384 1..384 1998 100 Plus
Hs3st-A-PB 605 CG33147-PB 145..353 30..240 400 44 Plus
Hs3st-A-PA 605 CG33147-PA 145..353 30..240 400 44 Plus
Hs3st-A-PB 605 CG33147-PB 452..603 226..384 336 43.8 Plus
Hs3st-A-PA 605 CG33147-PA 452..603 226..384 336 43.8 Plus
sfl-PB 1048 CG8339-PB 758..1027 131..376 288 30.5 Plus
sfl-PA 1048 CG8339-PA 758..1027 131..376 288 30.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:34:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14881-PA 390 GI14881-PA 1..390 14..384 1700 82.1 Plus
Dmoj\GI19219-PA 588 GI19219-PA 249..363 128..240 389 64.3 Plus
Dmoj\GI19219-PA 588 GI19219-PA 450..586 243..384 339 44.8 Plus
Dmoj\GI12102-PA 1025 GI12102-PA 735..1004 131..376 294 31.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:34:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13007-PA 381 GL13007-PA 1..380 13..383 1693 86.6 Plus
Dper\GL10768-PA 596 GL10768-PA 246..360 128..240 383 63.5 Plus
Dper\GL10768-PA 596 GL10768-PA 450..594 235..384 344 43.7 Plus
Dper\GL22583-PA 995 GL22583-PA 698..974 131..376 270 29 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20664-PA 381 GA20664-PA 1..380 13..383 1698 86.8 Plus
Dpse\GA17321-PA 596 GA17321-PA 248..362 128..240 383 63.5 Plus
Dpse\GA17321-PA 596 GA17321-PA 450..594 235..384 345 43.7 Plus
Dpse\GA21002-PA 815 GA21002-PA 518..794 131..376 269 29 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:34:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22954-PA 385 GM22954-PA 1..385 1..384 2024 98.4 Plus
Dsec\GM21913-PA 607 GM21913-PA 242..356 128..240 385 63.5 Plus
Dsec\GM21913-PA 607 GM21913-PA 461..605 235..384 350 43.7 Plus
Dsec\GM14789-PA 874 GM14789-PA 584..853 131..376 290 31.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24871-PA 203 GD24871-PA 1..203 182..384 1107 99.5 Plus
Dsim\GD11407-PA 609 GD11407-PA 243..357 128..240 370 61.7 Plus
Dsim\GD11407-PA 609 GD11407-PA 463..607 235..384 352 43.7 Plus
Dsim\GD13961-PA 875 GD13961-PA 585..854 131..376 289 31.2 Plus
Dsim\GD17439-PA 88 GD17439-PA 1..64 1..64 259 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15310-PA 373 GJ15310-PA 1..373 14..384 1731 85.9 Plus
Dvir\GJ20291-PA 583 GJ20291-PA 244..360 126..240 386 63.2 Plus
Dvir\GJ20291-PA 583 GJ20291-PA 445..581 243..384 344 45.5 Plus
Dvir\GJ13376-PA 1013 GJ13376-PA 723..992 131..376 291 30.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16348-PA 375 GK16348-PA 1..375 13..384 1675 86.1 Plus
Dwil\GK20921-PA 573 GK20921-PA 227..343 126..240 386 62.4 Plus
Dwil\GK20921-PA 573 GK20921-PA 435..571 243..384 348 45.5 Plus
Dwil\GK12546-PA 1080 GK12546-PA 782..1059 131..376 279 28.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:34:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15838-PA 372 GE15838-PA 1..372 13..384 1980 98.7 Plus
Dyak\GE11996-PA 606 GE11996-PA 240..354 128..240 384 63.5 Plus
Dyak\GE11996-PA 606 GE11996-PA 460..604 235..384 350 43.7 Plus
Dyak\GE21567-PA 871 GE21567-PA 581..850 131..376 287 30.9 Plus

RE01736.hyp Sequence

Translation from 66 to 1220

> RE01736.hyp
MRDTAATSAQPAMIVMSIWCSSLSLSSRSLAIALVICVTLVYFSYSFNAC
LLASISRSLQQSNLRNLLALTSSPRNETNNAANSSSSNSSSSRNSSSTTG
APPAQTVTSSLDGAPKYQLLRQQGLRPSRHLPDTLIIGVKKSGTRALLEF
IRLHPDVRAAGSEVHFFDRHYQRGLRWYRHHMPYTIEGQITMEKTPSYFV
TKEVPQRVYHMNPATKLLIVVRDPVTRAISDYTQAASKKADMKLFEQLAF
VNGSYSVVDTNWGPVKIGVYARYLERWLLYFPLSQLLFISGERLIMDPAY
EIGRVQDFLGLKRVVTEKHFYFNATKGFPCLFKSEARSTPHCLGKTKGRN
HPHIDPGAIERLREFYRPFNNKFYQLTGINFAWP*

RE01736.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
Hs3st-B-PB 384 CG7890-PB 1..384 1..384 1998 100 Plus
Hs3st-B-PA 384 CG7890-PA 1..384 1..384 1998 100 Plus
Hs3st-A-PB 605 CG33147-PB 145..353 30..240 400 44 Plus
Hs3st-A-PA 605 CG33147-PA 145..353 30..240 400 44 Plus
Hs3st-A-PB 605 CG33147-PB 452..603 226..384 336 43.8 Plus
Hs3st-A-PA 605 CG33147-PA 452..603 226..384 336 43.8 Plus
sfl-PB 1048 CG8339-PB 758..1027 131..376 288 30.5 Plus