BDGP Sequence Production Resources |
Search the DGRC for RE01736
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 17 |
Well: | 36 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Hs3st-B-RA |
Protein status: | RE01736.pep: gold |
Preliminary Size: | 1155 |
Sequenced Size: | 2021 |
Gene | Date | Evidence |
---|---|---|
CG7890 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7890 | 2002-05-17 | Blastp of sequenced clone |
CG7890 | 2003-01-01 | Sim4 clustering to Release 3 |
Hs3st-B | 2008-04-29 | Release 5.5 accounting |
Hs3st-B | 2008-08-15 | Release 5.9 accounting |
Hs3st-B | 2008-12-18 | 5.12 accounting |
2021 bp (2021 high quality bases) assembled on 2002-05-17
GenBank Submission: AY119100
> RE01736.complete AGTGGTCCGGGGCGACTGAGTGGCAATGGAATTTGACGGAGCGCTCGGAA CCGATTATACCGCCAGATGCGAGACACGGCAGCCACTAGCGCCCAGCCAG CCATGATTGTGATGAGCATCTGGTGCAGCAGCCTCAGCCTGAGCAGCCGC AGCCTGGCCATCGCCCTGGTGATCTGCGTGACTCTGGTCTACTTCTCCTA CAGCTTCAATGCCTGCCTCCTGGCCAGCATCAGTCGCAGTCTGCAGCAGA GCAACTTACGCAATCTACTGGCGCTGACCTCCTCGCCCCGCAACGAGACC AATAACGCCGCCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGGAACAG CTCATCCACCACCGGTGCTCCGCCGGCACAGACGGTTACTAGCAGCCTGG ATGGGGCGCCCAAGTATCAGCTGCTCCGTCAGCAGGGGCTCCGACCATCG CGCCACCTGCCCGACACGCTCATCATTGGCGTGAAGAAGAGCGGGACGCG GGCGCTGCTCGAGTTCATCCGCCTGCATCCGGACGTGCGGGCCGCCGGTT CGGAGGTGCACTTCTTCGACAGGCACTACCAGCGGGGACTACGCTGGTAC CGCCACCACATGCCGTACACTATCGAGGGCCAGATCACCATGGAGAAGAC GCCCAGCTACTTCGTCACCAAGGAGGTGCCGCAGCGCGTCTACCACATGA ATCCGGCAACAAAATTACTGATTGTGGTGCGGGATCCGGTGACGCGGGCC ATCTCCGACTACACACAGGCGGCGAGCAAGAAGGCGGACATGAAGCTCTT CGAGCAGCTGGCCTTCGTCAACGGTAGCTACTCGGTGGTGGACACCAACT GGGGCCCGGTGAAGATCGGCGTCTATGCACGCTATCTGGAGCGCTGGCTG CTCTACTTTCCGCTCTCGCAGCTGCTCTTCATCAGCGGCGAGCGGCTGAT CATGGATCCCGCCTACGAGATTGGACGCGTACAGGACTTCCTCGGTCTGA AGCGCGTGGTCACCGAGAAGCACTTCTACTTCAATGCCACCAAGGGCTTC CCCTGCCTCTTCAAGTCGGAGGCACGCTCCACGCCCCACTGTCTGGGTAA GACCAAGGGGCGCAACCATCCGCACATAGATCCCGGGGCCATCGAGCGCC TCCGGGAGTTCTACCGGCCCTTCAACAACAAGTTCTACCAGCTGACGGGC ATCAACTTCGCCTGGCCATAGGATCCACGGCTGGGTGAGTAGACGGAACT GGGATACGTGCAAGGCTAGTACCGAAATGGATTGGATTGGCCAGAGGCTA GGCACCTTCACTGATCTGCTCAATTTACATATCACATCCATCCCCATTGG AGTATGCTTGACTATCCCTAAGCCCTAATCCCTAATATCTGGTATCAATT TCCGTTTCAGCGGGCGTGAAATGAATGGAGTTTGAGAATAGGAGATATTG TTGTTGCTGGCCACGGCAACGGACTGATATTGTTGATTGCATTTTTGATA CATATAATTGTACTTATATATAGTATATACACACACACATAAAGTTAGTG CTCAATTAATTGTAGCTTTATCAGGAGACAAATTCAACGAAGTGCGCAAC CTGAAAAGTCCGCACTCAAACAATACGGTTCCTCACTCCAATTCAATTCA AATGAAATGAAATGAAATGAAACTCACTTTTCCCACTATGCTCGAATGTC AGGCAGTTGGACGTGGAGGAGCCACGTTCGATCCGAGATGGACATGGTTC CCCCGTCCGCTGGGCACACACATTGCTATGTACTACCACTACCTAAGATC ATTATACCTAAGATCATTATGTGCATTTATATACAAGAATAGTGAAAAAA TAGAGCTTACTACGAAATTCCTACAGTCTCCTAAACTAAACATATACAAA ATATTGTATGCATAGTTCCAACAATTTCAATTGCATGACTCAACCAATAC GATTGCTTAGCCAATTTCAATTAAAAAACAAACTAAATAAATCGACCTTA AATCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 19139668..19140948 | 714..2004 | 6255 | 99.1 | Plus |
chrX | 22417052 | chrX | 19138649..19139116 | 246..713 | 2340 | 100 | Plus |
chrX | 22417052 | chrX | 19137994..19138242 | 1..249 | 1230 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 19258852..19260142 | 714..2004 | 6440 | 99.9 | Plus |
X | 23527363 | X | 19257833..19258300 | 246..713 | 2340 | 100 | Plus |
X | 23527363 | X | 19257173..19257421 | 1..249 | 1230 | 99.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 19137994..19138242 | 1..249 | 99 | -> | Plus |
chrX | 19138653..19139116 | 250..713 | 91 | -> | Plus |
chrX | 19139668..19140948 | 714..2005 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs3st-B-RA | 1..1155 | 67..1221 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs3st-B-RA | 1..1155 | 67..1221 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs3st-B-RA | 1..1155 | 67..1221 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs3st-B-RA | 1..1155 | 67..1221 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs3st-B-RA | 1..1155 | 67..1221 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs3st-B-RA | 1..2004 | 1..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs3st-B-RA | 1..2004 | 1..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs3st-B-RA | 88..2091 | 1..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs3st-B-RA | 1..2004 | 1..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hs3st-B-RA | 88..2091 | 1..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19249075..19249323 | 1..249 | 99 | -> | Plus |
X | 19249739..19250202 | 250..713 | 100 | -> | Plus |
X | 19250754..19252044 | 714..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19249075..19249323 | 1..249 | 99 | -> | Plus |
X | 19249739..19250202 | 250..713 | 100 | -> | Plus |
X | 19250754..19252044 | 714..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19249075..19249323 | 1..249 | 99 | -> | Plus |
X | 19249739..19250202 | 250..713 | 100 | -> | Plus |
X | 19250754..19252044 | 714..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 19143108..19143356 | 1..249 | 99 | -> | Plus |
arm_X | 19143772..19144235 | 250..713 | 100 | -> | Plus |
arm_X | 19144787..19146077 | 714..2005 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19257173..19257421 | 1..249 | 99 | -> | Plus |
X | 19257837..19258300 | 250..713 | 100 | -> | Plus |
X | 19258852..19260142 | 714..2005 | 99 | Plus |
Translation from 66 to 1220
> RE01736.pep MRDTAATSAQPAMIVMSIWCSSLSLSSRSLAIALVICVTLVYFSYSFNAC LLASISRSLQQSNLRNLLALTSSPRNETNNAANSSSSNSSSSRNSSSTTG APPAQTVTSSLDGAPKYQLLRQQGLRPSRHLPDTLIIGVKKSGTRALLEF IRLHPDVRAAGSEVHFFDRHYQRGLRWYRHHMPYTIEGQITMEKTPSYFV TKEVPQRVYHMNPATKLLIVVRDPVTRAISDYTQAASKKADMKLFEQLAF VNGSYSVVDTNWGPVKIGVYARYLERWLLYFPLSQLLFISGERLIMDPAY EIGRVQDFLGLKRVVTEKHFYFNATKGFPCLFKSEARSTPHCLGKTKGRN HPHIDPGAIERLREFYRPFNNKFYQLTGINFAWP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15993-PA | 374 | GF15993-PA | 1..374 | 13..384 | 1766 | 93.6 | Plus |
Dana\GF11113-PA | 621 | GF11113-PA | 257..371 | 128..240 | 387 | 63.5 | Plus |
Dana\GF11113-PA | 621 | GF11113-PA | 475..619 | 235..384 | 352 | 43.7 | Plus |
Dana\GF23539-PA | 1052 | GF23539-PA | 762..1031 | 131..376 | 294 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19219-PA | 371 | GG19219-PA | 1..371 | 13..384 | 1952 | 97.8 | Plus |
Dere\GG21921-PA | 613 | GG21921-PA | 248..362 | 128..240 | 386 | 63.5 | Plus |
Dere\GG21921-PA | 613 | GG21921-PA | 467..611 | 235..384 | 351 | 43.7 | Plus |
Dere\GG15349-PA | 859 | GG15349-PA | 569..838 | 131..376 | 291 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24726-PA | 384 | GH24726-PA | 4..384 | 17..384 | 1707 | 83.3 | Plus |
Dgri\GH23421-PA | 477 | GH23421-PA | 141..257 | 126..240 | 383 | 62.4 | Plus |
Dgri\GH23421-PA | 477 | GH23421-PA | 339..475 | 243..384 | 343 | 45.5 | Plus |
Dgri\GH15162-PA | 1086 | GH15162-PA | 796..1065 | 131..376 | 294 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hs3st-B-PB | 384 | CG7890-PB | 1..384 | 1..384 | 1998 | 100 | Plus |
Hs3st-B-PA | 384 | CG7890-PA | 1..384 | 1..384 | 1998 | 100 | Plus |
Hs3st-A-PB | 605 | CG33147-PB | 145..353 | 30..240 | 400 | 44 | Plus |
Hs3st-A-PA | 605 | CG33147-PA | 145..353 | 30..240 | 400 | 44 | Plus |
Hs3st-A-PB | 605 | CG33147-PB | 452..603 | 226..384 | 336 | 43.8 | Plus |
Hs3st-A-PA | 605 | CG33147-PA | 452..603 | 226..384 | 336 | 43.8 | Plus |
sfl-PB | 1048 | CG8339-PB | 758..1027 | 131..376 | 288 | 30.5 | Plus |
sfl-PA | 1048 | CG8339-PA | 758..1027 | 131..376 | 288 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14881-PA | 390 | GI14881-PA | 1..390 | 14..384 | 1700 | 82.1 | Plus |
Dmoj\GI19219-PA | 588 | GI19219-PA | 249..363 | 128..240 | 389 | 64.3 | Plus |
Dmoj\GI19219-PA | 588 | GI19219-PA | 450..586 | 243..384 | 339 | 44.8 | Plus |
Dmoj\GI12102-PA | 1025 | GI12102-PA | 735..1004 | 131..376 | 294 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13007-PA | 381 | GL13007-PA | 1..380 | 13..383 | 1693 | 86.6 | Plus |
Dper\GL10768-PA | 596 | GL10768-PA | 246..360 | 128..240 | 383 | 63.5 | Plus |
Dper\GL10768-PA | 596 | GL10768-PA | 450..594 | 235..384 | 344 | 43.7 | Plus |
Dper\GL22583-PA | 995 | GL22583-PA | 698..974 | 131..376 | 270 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20664-PA | 381 | GA20664-PA | 1..380 | 13..383 | 1698 | 86.8 | Plus |
Dpse\GA17321-PA | 596 | GA17321-PA | 248..362 | 128..240 | 383 | 63.5 | Plus |
Dpse\GA17321-PA | 596 | GA17321-PA | 450..594 | 235..384 | 345 | 43.7 | Plus |
Dpse\GA21002-PA | 815 | GA21002-PA | 518..794 | 131..376 | 269 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22954-PA | 385 | GM22954-PA | 1..385 | 1..384 | 2024 | 98.4 | Plus |
Dsec\GM21913-PA | 607 | GM21913-PA | 242..356 | 128..240 | 385 | 63.5 | Plus |
Dsec\GM21913-PA | 607 | GM21913-PA | 461..605 | 235..384 | 350 | 43.7 | Plus |
Dsec\GM14789-PA | 874 | GM14789-PA | 584..853 | 131..376 | 290 | 31.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24871-PA | 203 | GD24871-PA | 1..203 | 182..384 | 1107 | 99.5 | Plus |
Dsim\GD11407-PA | 609 | GD11407-PA | 243..357 | 128..240 | 370 | 61.7 | Plus |
Dsim\GD11407-PA | 609 | GD11407-PA | 463..607 | 235..384 | 352 | 43.7 | Plus |
Dsim\GD13961-PA | 875 | GD13961-PA | 585..854 | 131..376 | 289 | 31.2 | Plus |
Dsim\GD17439-PA | 88 | GD17439-PA | 1..64 | 1..64 | 259 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15310-PA | 373 | GJ15310-PA | 1..373 | 14..384 | 1731 | 85.9 | Plus |
Dvir\GJ20291-PA | 583 | GJ20291-PA | 244..360 | 126..240 | 386 | 63.2 | Plus |
Dvir\GJ20291-PA | 583 | GJ20291-PA | 445..581 | 243..384 | 344 | 45.5 | Plus |
Dvir\GJ13376-PA | 1013 | GJ13376-PA | 723..992 | 131..376 | 291 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16348-PA | 375 | GK16348-PA | 1..375 | 13..384 | 1675 | 86.1 | Plus |
Dwil\GK20921-PA | 573 | GK20921-PA | 227..343 | 126..240 | 386 | 62.4 | Plus |
Dwil\GK20921-PA | 573 | GK20921-PA | 435..571 | 243..384 | 348 | 45.5 | Plus |
Dwil\GK12546-PA | 1080 | GK12546-PA | 782..1059 | 131..376 | 279 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15838-PA | 372 | GE15838-PA | 1..372 | 13..384 | 1980 | 98.7 | Plus |
Dyak\GE11996-PA | 606 | GE11996-PA | 240..354 | 128..240 | 384 | 63.5 | Plus |
Dyak\GE11996-PA | 606 | GE11996-PA | 460..604 | 235..384 | 350 | 43.7 | Plus |
Dyak\GE21567-PA | 871 | GE21567-PA | 581..850 | 131..376 | 287 | 30.9 | Plus |
Translation from 66 to 1220
> RE01736.hyp MRDTAATSAQPAMIVMSIWCSSLSLSSRSLAIALVICVTLVYFSYSFNAC LLASISRSLQQSNLRNLLALTSSPRNETNNAANSSSSNSSSSRNSSSTTG APPAQTVTSSLDGAPKYQLLRQQGLRPSRHLPDTLIIGVKKSGTRALLEF IRLHPDVRAAGSEVHFFDRHYQRGLRWYRHHMPYTIEGQITMEKTPSYFV TKEVPQRVYHMNPATKLLIVVRDPVTRAISDYTQAASKKADMKLFEQLAF VNGSYSVVDTNWGPVKIGVYARYLERWLLYFPLSQLLFISGERLIMDPAY EIGRVQDFLGLKRVVTEKHFYFNATKGFPCLFKSEARSTPHCLGKTKGRN HPHIDPGAIERLREFYRPFNNKFYQLTGINFAWP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hs3st-B-PB | 384 | CG7890-PB | 1..384 | 1..384 | 1998 | 100 | Plus |
Hs3st-B-PA | 384 | CG7890-PA | 1..384 | 1..384 | 1998 | 100 | Plus |
Hs3st-A-PB | 605 | CG33147-PB | 145..353 | 30..240 | 400 | 44 | Plus |
Hs3st-A-PA | 605 | CG33147-PA | 145..353 | 30..240 | 400 | 44 | Plus |
Hs3st-A-PB | 605 | CG33147-PB | 452..603 | 226..384 | 336 | 43.8 | Plus |
Hs3st-A-PA | 605 | CG33147-PA | 452..603 | 226..384 | 336 | 43.8 | Plus |
sfl-PB | 1048 | CG8339-PB | 758..1027 | 131..376 | 288 | 30.5 | Plus |