BDGP Sequence Production Resources |
Search the DGRC for RE01794
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 17 |
Well: | 94 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mtd-RC |
Protein status: | RE01794.pep: gold |
Sequenced Size: | 2316 |
Gene | Date | Evidence |
---|---|---|
l(3)82Fd-RC | 2010-03-03 | Manual selection by Ken Wan |
2316 bp assembled on 2010-09-29
GenBank Submission: BT125678.1
> RE01794.complete AGTCGGTCGAGCAACTTGTTTGAAAACACACAGAGCTGCCCCCAAAAGGA GCTTTTTAAGTGAAAGAAAAGACGTTAAATATAGAAAAAACATCTGCGGA GAGCACGTTGAAAAGTAAACAAATTTGAATGTTCTAACTAGGAACAAAGT GTTTACGTGTAACGAAGAAAGGCCAAAAACAGTGCTGCAACGGCGAAGAG CGGAAGGCGTAGAGCGTGATAAAAGCGGTGGCAACAACAGAAACGCAAAT AATCGGAGAAAAAAGCTGAAGCAAGTCTCGTGGGTCACAAGACCATTCAG AAAAGCGAAAGAGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGGCGATATGTGGAGCGTTAGAGCTTTCAAACAGTGCTAGC CCAAAAAGTGGGACACCCCCACGCACGAAAGCTTTTGCATCTGCTACCTC TGCCCGCTTCCACTGCTGAACACCGCCACTGTTGGCCATCAGCAACATGT GGTTCGCCATTTCTCTGTTTGCCATCTTGGCCGTTTGCGGGTTGGCCGGC CGCAGGTGGGGTCGCTACCTCTATCTGCACTACGGCCGCCACCTGCTGCC GCGCTCCCTCCTCTCGGCCAAGAACCGCGCGCCCACGCCCCCTCTCTCGC CCACCAAGGACGACCAGAGCCTGGAGGCTCTCCTCGACGAGAGCGGCGAA ATGCACGAAACGGTGCTGTCAATGAGCACAGATGAATATCGCAAGACCTC GCTCTTTGCCACCGGTTCCTTCGACCTGGACTTCCCCATACCAGACCTGA TCGGCAAGACAGAAATCCTTACAGAGGAGCATCGCGAGAAGCTCTGTTCA CATCTGCCGGCTAGAGCCGAGGGATACTCCTGGTCCCTGATCTTCAGCAC CTCACAACATGGTTTCGCACTGAACTCCCTGTACCGCAAAATGGCGCGTC TGGAGAGTCCAGTTCTGATTGTCATTGAGGATACGGAGCACAACGTATTT GGTGCCCTCACCTCCTGCTCACTGCATGTGTCGGATCACTTTTACGGCAC CGGTGAGTCCCTGCTCTACAAGTTTAACCCCAGCTTCAAGGTGTTCCATT GGACTGGCGAGAATATGTACTTCATCAAAGGAAACATGGAGAGCCTTTCG ATTGGCGCTGGAGACGGTCGTTTTGGCCTGTGGCTGGATGGTGATCTGAA CCAGGGACGATCGCAACAGTGCAGCACATACGGCAATGAGCCTCTGGCGC CACAAGAAGACTTTGTTATCAAAACACTCGAATGCTGGGCATTTGTTTAA GTGAATTTCTGTTGTCGACAACAAACATATTTAAGGATGGGAGCGAGGGC CTCCTGCCGACCTATCTATTTAATTAACTATATGTACTTGTACTAAAAAC CAGCAACCTGAGAAAGATGTCAAAAGCTGGTGTGCGTCCAAGGATCATCC CTTCGGAACGGTCCACACAGCCCGAACCCCGAAACACTTGAATACACGAA CACCACCACATGAAGATGGTTTTGAAGGGATCTGATCTGAAGAAAAATGC TTGTGAAAACTCCGTTCTCTGAAGCAACTGCGAGTTAGCTATGCGTTGGA ACGTATTAATTATTTAGTTTTTATATCATATATTATTAAACAAGAGCAAC TAAATTATGTGTTAGACTTAAACAAAACAAAACAGAATATGAGAAAACCC AAGAAACAGACTAGCGACACAAAAACTTAAGCGAAAAGAAATGAGGATAA CATTTGAGGGCATCACACATCTCCATGAAAAACATGGCACACGCATACAC CCACATACGCCTACATTAAAAAACACACATTATGTTTAGTTCTTAATACC GAAAATTATAAACACCAAATTGTGAGAAGAGACATATTGAAAATAGGCAG ATTTTTATCATTTATCGTGTCCAGTTCTCTGGATTGATTTCAGTTTGAAT TTAGTTTCGATTGTTTGAGTTACTAGAGTTATTTGAGAACATTGTGAAAA GCGAAGCGAGCTGAGATGAGAAAAATAAAAAGAATGTCGATATAATTTAT AGTGCAAAAGTGCTGATTGCAAGTAAAACTAAAGCGAAGATAACTTTAAA CGATTTGACTTTTATGTATATGTAAAGAAGGAGCCGCGAAGAGCTGAGAG CGAGCGTTTTATTTTTAGTTTTACACGATATACATACATACATATATTTA ATTACGATTATTTTAATGCTAATGATGTTGACTTTTATGCAATTATACTA AAACAAAAACAGAAACAACACCAGAATGAAATACACAATATTATACAACC AAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1098611..1099746 | 2300..1165 | 5680 | 100 | Minus |
chr3R | 27901430 | chr3R | 1108326..1109040 | 715..1 | 3575 | 100 | Minus |
chr3R | 27901430 | chr3R | 1099813..1099982 | 1164..995 | 850 | 100 | Minus |
chr3R | 27901430 | chr3R | 1100396..1100559 | 997..834 | 820 | 100 | Minus |
chr3R | 27901430 | chr3R | 1100630..1100752 | 834..712 | 615 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5272943..5274082 | 2304..1165 | 5700 | 100 | Minus |
3R | 32079331 | 3R | 5282662..5283376 | 715..1 | 3575 | 100 | Minus |
3R | 32079331 | 3R | 5274149..5274318 | 1164..995 | 850 | 100 | Minus |
3R | 32079331 | 3R | 5274732..5274895 | 997..834 | 820 | 100 | Minus |
3R | 32079331 | 3R | 5274966..5275088 | 834..712 | 615 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 5013774..5014913 | 2304..1165 | 5700 | 100 | Minus |
3R | 31820162 | 3R | 5023493..5024207 | 715..1 | 3575 | 100 | Minus |
3R | 31820162 | 3R | 5014980..5015149 | 1164..995 | 850 | 100 | Minus |
3R | 31820162 | 3R | 5015563..5015726 | 997..834 | 820 | 100 | Minus |
3R | 31820162 | 3R | 5015797..5015919 | 834..712 | 615 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
412 | 7567 | 412 412 7567bp | 6861..6999 | 2157..2297 | 123 | 57 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 6340..6475 | 1600..1736 | 123 | 58.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1100399..1100558 | 835..994 | 100 | <- | Minus |
chr3R | 1100630..1100751 | 713..834 | 100 | <- | Minus |
chr3R | 1098611..1099746 | 1165..2300 | 100 | <- | Minus |
chr3R | 1099813..1099982 | 995..1164 | 100 | <- | Minus |
chr3R | 1108329..1109040 | 1..712 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)82Fd-RC | 1..804 | 497..1300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)82Fd-RC | 1..804 | 497..1300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtd-RC | 1..804 | 497..1300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtd-RC | 1..804 | 497..1300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)82Fd-RC | 1..2279 | 22..2300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
l(3)82Fd-RC | 1..2279 | 22..2300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtd-RC | 4..2303 | 1..2300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mtd-RC | 4..2303 | 1..2300 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5272947..5274082 | 1165..2300 | 100 | <- | Minus |
3R | 5274149..5274318 | 995..1164 | 100 | <- | Minus |
3R | 5274735..5274894 | 835..994 | 100 | <- | Minus |
3R | 5274966..5275087 | 713..834 | 100 | <- | Minus |
3R | 5282665..5283376 | 1..712 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5272947..5274082 | 1165..2300 | 100 | <- | Minus |
3R | 5274149..5274318 | 995..1164 | 100 | <- | Minus |
3R | 5274735..5274894 | 835..994 | 100 | <- | Minus |
3R | 5274966..5275087 | 713..834 | 100 | <- | Minus |
3R | 5282665..5283376 | 1..712 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5272947..5274082 | 1165..2300 | 100 | <- | Minus |
3R | 5274149..5274318 | 995..1164 | 100 | <- | Minus |
3R | 5274735..5274894 | 835..994 | 100 | <- | Minus |
3R | 5274966..5275087 | 713..834 | 100 | <- | Minus |
3R | 5282665..5283376 | 1..712 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1100688..1100809 | 713..834 | 100 | <- | Minus |
arm_3R | 1098669..1099804 | 1165..2300 | 100 | <- | Minus |
arm_3R | 1099871..1100040 | 995..1164 | 100 | <- | Minus |
arm_3R | 1100457..1100616 | 835..994 | 100 | <- | Minus |
arm_3R | 1108387..1109098 | 1..712 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5013778..5014913 | 1165..2300 | 100 | <- | Minus |
3R | 5014980..5015149 | 995..1164 | 100 | <- | Minus |
3R | 5015566..5015725 | 835..994 | 100 | <- | Minus |
3R | 5015797..5015918 | 713..834 | 100 | <- | Minus |
3R | 5023496..5024207 | 1..712 | 100 | Minus |
Translation from 496 to 1299
> RE01794.pep MWFAISLFAILAVCGLAGRRWGRYLYLHYGRHLLPRSLLSAKNRAPTPPL SPTKDDQSLEALLDESGEMHETVLSMSTDEYRKTSLFATGSFDLDFPIPD LIGKTEILTEEHREKLCSHLPARAEGYSWSLIFSTSQHGFALNSLYRKMA RLESPVLIVIEDTEHNVFGALTSCSLHVSDHFYGTGESLLYKFNPSFKVF HWTGENMYFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQQCSTYGNEPL APQEDFVIKTLECWAFV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16064-PA | 267 | GF16064-PA | 1..267 | 1..267 | 1391 | 96.6 | Plus |
Dana\GF24274-PA | 592 | GF24274-PA | 423..590 | 116..267 | 221 | 30.6 | Plus |
Dana\GF14028-PA | 450 | GF14028-PA | 234..398 | 107..265 | 168 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11111-PA | 192 | GG11111-PA | 1..192 | 76..267 | 1032 | 100 | Plus |
Dere\GG11082-PA | 94 | GG11082-PA | 1..93 | 1..97 | 391 | 81.4 | Plus |
Dere\GG21540-PA | 592 | GG21540-PA | 423..590 | 116..267 | 221 | 30.6 | Plus |
Dere\GG23536-PA | 447 | GG23536-PA | 243..398 | 116..265 | 171 | 30.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22698-PA | 266 | GH22698-PA | 1..266 | 1..267 | 1341 | 92.1 | Plus |
Dgri\GH11143-PA | 621 | GH11143-PA | 452..619 | 116..267 | 219 | 30.6 | Plus |
Dgri\GH13150-PA | 448 | GH13150-PA | 243..398 | 116..265 | 183 | 31.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mtd-PC | 267 | CG32464-PC | 1..267 | 1..267 | 1426 | 100 | Plus |
mtd-PR | 789 | CG32464-PR | 579..789 | 53..267 | 1050 | 93 | Plus |
mtd-PF | 869 | CG32464-PF | 659..869 | 53..267 | 1050 | 93 | Plus |
mtd-PAA | 871 | CG32464-PAA | 661..871 | 53..267 | 1050 | 93 | Plus |
mtd-PM | 1012 | CG32464-PM | 802..1012 | 53..267 | 1050 | 93 | Plus |
mtd-PO | 1025 | CG32464-PO | 815..1025 | 53..267 | 1050 | 93 | Plus |
mtd-PG | 1033 | CG32464-PG | 823..1033 | 53..267 | 1050 | 93 | Plus |
mtd-PT | 1106 | CG32464-PT | 896..1106 | 53..267 | 1050 | 93 | Plus |
mtd-PS | 1106 | CG32464-PS | 896..1106 | 53..267 | 1050 | 93 | Plus |
mtd-PY | 1158 | CG32464-PY | 948..1158 | 53..267 | 1050 | 93 | Plus |
mtd-PU | 1246 | CG32464-PU | 1036..1246 | 53..267 | 1050 | 93 | Plus |
mtd-PJ | 1270 | CG32464-PJ | 1060..1270 | 53..267 | 1050 | 93 | Plus |
mtd-PB | 1270 | CG32464-PB | 1060..1270 | 53..267 | 1050 | 93 | Plus |
mtd-PN | 1270 | CG32464-PN | 1060..1270 | 53..267 | 1050 | 93 | Plus |
mtd-PP | 1314 | CG32464-PP | 1104..1314 | 53..267 | 1050 | 93 | Plus |
mtd-PA | 210 | CG32464-PA | 16..210 | 73..267 | 1043 | 100 | Plus |
mtd-PI | 213 | CG32464-PI | 19..213 | 73..267 | 1043 | 100 | Plus |
mtd-PK | 1055 | CG32464-PK | 861..1055 | 73..267 | 1043 | 100 | Plus |
mtd-PX | 1127 | CG32464-PX | 933..1127 | 73..267 | 1043 | 100 | Plus |
mtd-PW | 1180 | CG32464-PW | 986..1180 | 73..267 | 1043 | 100 | Plus |
mtd-PV | 1344 | CG32464-PV | 1150..1344 | 73..267 | 1043 | 100 | Plus |
mtd-PQ | 192 | CG32464-PQ | 1..192 | 76..267 | 1031 | 100 | Plus |
mtd-PH | 192 | CG32464-PH | 1..192 | 76..267 | 1031 | 100 | Plus |
sky-PK | 597 | CG9339-PK | 410..595 | 96..267 | 226 | 30 | Plus |
sky-PL | 606 | CG9339-PL | 419..604 | 96..267 | 226 | 30 | Plus |
sky-PJ | 607 | CG9339-PJ | 420..605 | 96..267 | 226 | 30 | Plus |
sky-PG | 568 | CG9339-PG | 399..566 | 116..267 | 219 | 30.6 | Plus |
sky-PD | 568 | CG9339-PD | 399..566 | 116..267 | 219 | 30.6 | Plus |
sky-PE | 568 | CG9339-PE | 399..566 | 116..267 | 219 | 30.6 | Plus |
sky-PI | 573 | CG9339-PI | 404..571 | 116..267 | 219 | 30.6 | Plus |
sky-PF | 573 | CG9339-PF | 404..571 | 116..267 | 219 | 30.6 | Plus |
sky-PA | 587 | CG9339-PA | 418..585 | 116..267 | 219 | 30.6 | Plus |
sky-PH | 587 | CG9339-PH | 418..585 | 116..267 | 219 | 30.6 | Plus |
sky-PB | 587 | CG9339-PB | 418..585 | 116..267 | 219 | 30.6 | Plus |
sky-PC | 592 | CG9339-PC | 423..590 | 116..267 | 219 | 30.6 | Plus |
CG5149-PA | 448 | CG5149-PA | 249..398 | 123..265 | 168 | 29.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10212-PA | 267 | GI10212-PA | 1..267 | 1..267 | 1359 | 93.6 | Plus |
Dmoj\GI17849-PA | 621 | GI17849-PA | 452..619 | 116..267 | 219 | 30.6 | Plus |
Dmoj\GI17790-PA | 449 | GI17790-PA | 243..398 | 116..265 | 186 | 31.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22193-PA | 210 | GL22193-PA | 12..210 | 69..267 | 1030 | 96.5 | Plus |
Dper\GL22192-PA | 118 | GL22192-PA | 1..73 | 1..73 | 319 | 89 | Plus |
Dper\GL19586-PA | 621 | GL19586-PA | 452..619 | 116..267 | 219 | 30.6 | Plus |
Dper\GL19228-PA | 450 | GL19228-PA | 253..398 | 127..265 | 177 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27407-PA | 210 | GA27407-PA | 12..210 | 69..267 | 1030 | 96.5 | Plus |
Dpse\GA27406-PA | 85 | GA27406-PA | 1..73 | 1..73 | 314 | 89 | Plus |
Dpse\GA26020-PA | 621 | GA26020-PA | 452..619 | 116..267 | 219 | 30.6 | Plus |
Dpse\GA18692-PA | 450 | GA18692-PA | 253..398 | 127..265 | 177 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10650-PA | 192 | GM10650-PA | 1..192 | 76..267 | 1032 | 100 | Plus |
Dsec\GM10648-PA | 74 | GM10648-PA | 1..72 | 1..72 | 381 | 100 | Plus |
Dsec\GM23295-PA | 592 | GM23295-PA | 423..590 | 116..267 | 221 | 30.6 | Plus |
Dsec\GM23297-PA | 178 | GM23297-PA | 4..176 | 96..267 | 194 | 28.7 | Plus |
Dsec\GM13572-PA | 448 | GM13572-PA | 243..398 | 116..265 | 167 | 29.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19632-PA | 267 | GD19632-PA | 1..267 | 1..267 | 1430 | 100 | Plus |
Dsim\GD21669-PA | 350 | GD21669-PA | 181..348 | 116..267 | 221 | 30.6 | Plus |
Dsim\GD22498-PA | 448 | GD22498-PA | 243..398 | 116..265 | 167 | 29.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11014-PA | 267 | GJ11014-PA | 1..267 | 1..267 | 1398 | 95.9 | Plus |
Dvir\GJ17344-PA | 621 | GJ17344-PA | 452..619 | 116..267 | 221 | 30.6 | Plus |
Dvir\GJ17615-PA | 448 | GJ17615-PA | 243..398 | 116..265 | 180 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14285-PA | 268 | GK14285-PA | 1..268 | 1..267 | 1350 | 93.7 | Plus |
Dwil\GK14678-PA | 592 | GK14678-PA | 423..590 | 116..267 | 221 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25299-PA | 192 | GE25299-PA | 1..192 | 76..267 | 1032 | 100 | Plus |
Dyak\GE25296-PA | 112 | GE25296-PA | 1..72 | 1..72 | 385 | 98.6 | Plus |
Dyak\GE13017-PA | 592 | GE13017-PA | 423..590 | 116..267 | 221 | 30.6 | Plus |
Dyak\GE18362-PA | 448 | GE18362-PA | 243..398 | 116..265 | 170 | 30.4 | Plus |
Translation from 496 to 1299
> RE01794.hyp MWFAISLFAILAVCGLAGRRWGRYLYLHYGRHLLPRSLLSAKNRAPTPPL SPTKDDQSLEALLDESGEMHETVLSMSTDEYRKTSLFATGSFDLDFPIPD LIGKTEILTEEHREKLCSHLPARAEGYSWSLIFSTSQHGFALNSLYRKMA RLESPVLIVIEDTEHNVFGALTSCSLHVSDHFYGTGESLLYKFNPSFKVF HWTGENMYFIKGNMESLSIGAGDGRFGLWLDGDLNQGRSQQCSTYGNEPL APQEDFVIKTLECWAFV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mtd-PC | 267 | CG32464-PC | 1..267 | 1..267 | 1426 | 100 | Plus |
mtd-PA | 210 | CG32464-PA | 16..210 | 73..267 | 1043 | 100 | Plus |
mtd-PI | 213 | CG32464-PI | 19..213 | 73..267 | 1043 | 100 | Plus |
mtd-PQ | 192 | CG32464-PQ | 1..192 | 76..267 | 1031 | 100 | Plus |
mtd-PH | 192 | CG32464-PH | 1..192 | 76..267 | 1031 | 100 | Plus |