BDGP Sequence Production Resources |
Search the DGRC for RE01910
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 19 |
Well: | 10 |
Vector: | pFlc-1 |
Associated Gene/Transcript | boi-RA |
Protein status: | RE01910.pep: gold |
Preliminary Size: | 2121 |
Sequenced Size: | 2731 |
Gene | Date | Evidence |
---|---|---|
CG13756 | 2002-01-01 | Sim4 clustering to Release 2 |
CG32796 | 2002-03-28 | Blastp of sequenced clone |
CG32796 | 2003-01-01 | Sim4 clustering to Release 3 |
boi | 2008-04-29 | Release 5.5 accounting |
boi | 2008-08-15 | Release 5.9 accounting |
boi | 2008-12-18 | 5.12 accounting |
2731 bp (2731 high quality bases) assembled on 2002-03-28
GenBank Submission: AY094843
> RE01910.complete AGTCTATCGATAATGTTGGTCTTTTACACGTTTAATTTTAACAAGTTAAC TTCTGCAGCATTTTTAACAATTTACATTTTTGTATCTATAAATTTATTGT TCCGTCAGTTGCTTAGTGTTCATGAGCTTTCTGAATAGCAATTATCCGAT CTTATTCCTTATCATCGATTTTATATGAAAATGTACATCGATGATCTGGT CTGGCAACGCCAGATATTCAAATGTTCAGAATTCGAGCATGGTGCCTCCG TCACGACCCAATGTCACCCGTCTGTCGGACGAGTCCGTGATGCTGCGCTG GAGTGTGCCACAAAACTCTGGACTCCAGATCACCTTTTTCAAGGTGCAGT ATCGCATGTTGGGCGACGGAAAAAATCGGAGGAAGAACTGGCAGACGACC AGCGACAATATCCCGTACGGAAACGCGCACGGATCCGGGCCTGGCCAGGG GAACAGTCACTGGCGGGCGCGGAACCGGGACAGGGAGTATGAAATGGGCA ATCCGCCCAAGAACTTCACCTCCTCCGTTACGGGACTGACCGCCGGCAAG TACTACCGCTTCCGGATCGTGGCGGTGTACTCCAATAACGACAACAAGGA GGGCAACACCTCCCTCAAGTTCTTCCTGCAGAATGGAACGTCCAAGTCGA ATCTGCCAGTGCCGGAACTACGCGAGGTGGAGACGCTTTCCGAGTCGGCC GTGGTGCTCCATTGGTCCCTGGTATCCTCGACTCAAAATGAGGATATAGA CGGGTACTATGCCTACTATAGGCCAGCGGACTCAGCAGCGGAGTATTTGA AGGCCACGGTGGATGGCGGAATGAGCAGGAGCTTCAAGATAGACCTCCTT CGTCCAGGAACCCCTTATGAGTTCAAATTGCAATCGTTCAACTCCGACGC AGCCTCTGAATTCAGTGCTATTCGGCAAGCGAGGACCAGAAAAACGCACG AGCAACCGGCTTCATCTTCGGCCACGCCAGTGCCAGCCAATAAGGCAGTG GAACAGCACCAGAACTCCTTATATCCACTGATCGCAGGTGCCGCTGGCGG AGGCATACTACTCCTCATCGCCTCATTGGTGGTCTGCCTTTGCCTAAAGA GACGGGAAAACTCTCAGCCGGAGGATGAGAACAAACCGCAATTGGAACAC ATTCAAGCGGACTTTGTTACCTCCGCCGTCCTGGGAGTTGGTGGCCACCA CAAAAGTGGCGATGTAAGGCGCCTCAACGGAGTGATTCCGAGGATGAATA TTACGCCCAATCCGCTGGCCCAGGAAACGGCATCCGATAAGAACAACTCT GGACTGCATCAGAATGGCCTTCACCACGCACAGCCGTACCATCCGCCTGG CACGCCCACTCTGATGCACAAGCGACTGGACTACCACCAGCAGCCGCCGC CGGTGCCTCCGCACTCGGCCTATTACCAACAGGCACCCACGCACCAGCCG TCGCCGATGATGGAGCGCAGTGTCAGGGGTCACCAGCAGCCCGGGGGCTT TCATATGGAGGAGGGCACACCCACGCCGACCAGGATACCATCCCTGCGGC GACAGCGACGCACCTCGGGCAACCAGCAGGTGCACAACAGCCACAGCAAT CTCAATATTGGCCTGAGCCACCACAACAACAACAACAACAACCTGCCGCC GCACCACCAGCATCTGCACCACCACCCCGGCCATCCGGGTGGCCTGGTGG GCATACCCATCGTGCCAGGGAGCCCTAGGGTCCAGAGATCGCCGATGCCG AGCAGGGCGATGATCAAGAGGACGCGCCTGGGCAGCCACACGGACAACAT ATCGTCGGGCAGTCTGAACAGTATTGAGGTGTGATGGCTCGCAGAGGAGG CAATTAACTAGTGGACTAGTGGGCGGAGCAGCACAACGAGGAGAAATATA CCTAAGCGGCAAGCGAAAGTGGTTCCCCAAAAACAGACAGTTTCAAGTAG ACTTAAGGATCCGAAACTAGATGTGTATTATTGAGATAATCGTAGGACAG GTCGGCAGAGCAGCTCGAAACCCTCGAATATTAGCTTTAAGGCACCCGGT ACTGTTTAGTTTTCCAAAAAACCAATTAATTTGGCCAATCATTAAGCTTA GAACTAGGGAATTTGCCATTAACAGAAGTTTCTGTCGTTTCAAATGCTCG AGTAACTTTGTGCTAAAACACTAGTAATCAAGTTTTGTTTTCATTTTGAG CTCATTAAAATGTATTTCGAGCAGAACGTTTAATTAAAAGAAAAAAACAG CTAAGCAGCTAAGTCGTTAAACGTTAATGCTGCTTCGTTTTGTTTTAGTT AAATATTGAATTTGAAAATATACAAACTTTAGTATAAGGAATTGGTAATG TAAGACTTTTTTCGTTGCTGCCGGCCAGATAGTCAGTAGAATTACTAATG TTAAGTTTTTTTTTTTATTATTGATAGAACTATTTCGGGGGCCAAATTTT ATCTCGAATAAGCCCTGTAGCATAGCGTTATTTATTTATTGCAGTGTAAA CGTCAGGCGTCAGCAACTCAAATTGATTAGTTCAATTAACAAGCAACCTA ATGTACGTTTAAGTCAAACCAACTATATAGCATTAAGTTAATACATTTCT AGATGTGACTAATACACAAAACCCAAGAGAGAAGCATCCTAAACTCGATT TAAGCTCATAGGCGGCAGTTTTAAACGAATATGCGAGTCCTGAAATTAAA AAGTGAATCTTTAAACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
boi-RA | 2721 | boi-RA | 3..2717 | 3..2717 | 13560 | 99.9 | Plus |
boi-RB | 4312 | boi-RB | 1825..4308 | 234..2717 | 12405 | 99.9 | Plus |
boi-RD | 4522 | boi-RD | 3093..4518 | 1292..2717 | 7115 | 99.9 | Plus |
boi-RD | 4522 | boi-RD | 1699..2757 | 234..1292 | 5295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 2338059..2339485 | 2716..1290 | 7030 | 99.5 | Minus |
chrX | 22417052 | chrX | 2340780..2341487 | 941..234 | 3525 | 99.9 | Minus |
chrX | 22417052 | chrX | 2341547..2341777 | 233..3 | 1155 | 100 | Minus |
chrX | 22417052 | chrX | 2340532..2340714 | 1124..942 | 915 | 100 | Minus |
chrX | 22417052 | chrX | 2340301..2340468 | 1291..1124 | 840 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 2444168..2445595 | 2717..1290 | 7125 | 99.9 | Minus |
X | 23542271 | X | 2446890..2447597 | 941..234 | 3540 | 100 | Minus |
X | 23542271 | X | 2447657..2447887 | 233..3 | 1155 | 100 | Minus |
X | 23542271 | X | 2446642..2446824 | 1124..942 | 915 | 100 | Minus |
X | 23542271 | X | 2446411..2446578 | 1291..1124 | 840 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 2452266..2453693 | 2717..1290 | 7125 | 99.9 | Minus |
X | 23527363 | X | 2454988..2455695 | 941..234 | 3540 | 100 | Minus |
X | 23527363 | X | 2455755..2455985 | 233..3 | 1155 | 100 | Minus |
X | 23527363 | X | 2454740..2454922 | 1124..942 | 915 | 100 | Minus |
X | 23527363 | X | 2454509..2454676 | 1291..1124 | 840 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Quasimodo | 7387 | Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. | 5393..5653 | 2425..2180 | 117 | 55.5 | Minus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 5175..5291 | 2428..2315 | 115 | 63 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 2340301..2340467 | 1125..1291 | 100 | <- | Minus |
chrX | 2340532..2340714 | 942..1124 | 100 | <- | Minus |
chrX | 2338059..2339483 | 1292..2716 | 98 | <- | Minus |
chrX | 2340780..2341487 | 234..941 | 99 | <- | Minus |
chrX | 2341547..2341778 | 1..233 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
boi-RA | 1..1644 | 191..1834 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
boi-RA | 1..1644 | 191..1834 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
boi-RA | 1..1644 | 191..1834 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
boi-RA | 1..1644 | 191..1834 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
boi-RA | 1..1644 | 191..1834 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
boi-RA | 2..2715 | 3..2716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
boi-RA | 2..2715 | 3..2716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
boi-RA | 2..2715 | 3..2716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
boi-RA | 2..2715 | 3..2716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
boi-RA | 4..2719 | 1..2716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2447657..2447888 | 1..233 | 99 | Minus | |
X | 2444169..2445593 | 1292..2716 | 99 | <- | Minus |
X | 2446411..2446577 | 1125..1291 | 100 | <- | Minus |
X | 2446642..2446824 | 942..1124 | 100 | <- | Minus |
X | 2446890..2447597 | 234..941 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2447657..2447888 | 1..233 | 99 | Minus | |
X | 2444169..2445593 | 1292..2716 | 99 | <- | Minus |
X | 2446411..2446577 | 1125..1291 | 100 | <- | Minus |
X | 2446642..2446824 | 942..1124 | 100 | <- | Minus |
X | 2446890..2447597 | 234..941 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2447657..2447888 | 1..233 | 99 | Minus | |
X | 2444169..2445593 | 1292..2716 | 99 | <- | Minus |
X | 2446411..2446577 | 1125..1291 | 100 | <- | Minus |
X | 2446642..2446824 | 942..1124 | 100 | <- | Minus |
X | 2446890..2447597 | 234..941 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 2338202..2339626 | 1292..2716 | 99 | <- | Minus |
arm_X | 2340444..2340610 | 1125..1291 | 100 | <- | Minus |
arm_X | 2340675..2340857 | 942..1124 | 100 | <- | Minus |
arm_X | 2340923..2341630 | 234..941 | 100 | <- | Minus |
arm_X | 2341690..2341921 | 1..233 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 2452267..2453691 | 1292..2716 | 99 | <- | Minus |
X | 2454509..2454675 | 1125..1291 | 100 | <- | Minus |
X | 2454740..2454922 | 942..1124 | 100 | <- | Minus |
X | 2454988..2455695 | 234..941 | 100 | <- | Minus |
X | 2455755..2455986 | 1..233 | 99 | Minus |
Translation from 190 to 1833
> RE01910.hyp MIWSGNARYSNVQNSSMVPPSRPNVTRLSDESVMLRWSVPQNSGLQITFF KVQYRMLGDGKNRRKNWQTTSDNIPYGNAHGSGPGQGNSHWRARNRDREY EMGNPPKNFTSSVTGLTAGKYYRFRIVAVYSNNDNKEGNTSLKFFLQNGT SKSNLPVPELREVETLSESAVVLHWSLVSSTQNEDIDGYYAYYRPADSAA EYLKATVDGGMSRSFKIDLLRPGTPYEFKLQSFNSDAASEFSAIRQARTR KTHEQPASSSATPVPANKAVEQHQNSLYPLIAGAAGGGILLLIASLVVCL CLKRRENSQPEDENKPQLEHIQADFVTSAVLGVGGHHKSGDVRRLNGVIP RMNITPNPLAQETASDKNNSGLHQNGLHHAQPYHPPGTPTLMHKRLDYHQ QPPPVPPHSAYYQQAPTHQPSPMMERSVRGHQQPGGFHMEEGTPTPTRIP SLRRQRRTSGNQQVHNSHSNLNIGLSHHNNNNNNLPPHHQHLHHHPGHPG GLVGIPIVPGSPRVQRSPMPSRAMIKRTRLGSHTDNISSGSLNSIEV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
boi-PA | 547 | CG32796-PA | 1..547 | 1..547 | 2930 | 100 | Plus |
boi-PF | 998 | CG32796-PF | 466..998 | 15..547 | 2850 | 99.8 | Plus |
boi-PE | 998 | CG32796-PE | 466..998 | 15..547 | 2850 | 99.8 | Plus |
boi-PB | 998 | CG32796-PB | 466..998 | 15..547 | 2850 | 99.8 | Plus |
boi-PG | 1105 | CG32796-PG | 466..821 | 15..370 | 1846 | 99.2 | Plus |
Translation from 190 to 1833
> RE01910.pep MIWSGNARYSNVQNSSMVPPSRPNVTRLSDESVMLRWSVPQNSGLQITFF KVQYRMLGDGKNRRKNWQTTSDNIPYGNAHGSGPGQGNSHWRARNRDREY EMGNPPKNFTSSVTGLTAGKYYRFRIVAVYSNNDNKEGNTSLKFFLQNGT SKSNLPVPELREVETLSESAVVLHWSLVSSTQNEDIDGYYAYYRPADSAA EYLKATVDGGMSRSFKIDLLRPGTPYEFKLQSFNSDAASEFSAIRQARTR KTHEQPASSSATPVPANKAVEQHQNSLYPLIAGAAGGGILLLIASLVVCL CLKRRENSQPEDENKPQLEHIQADFVTSAVLGVGGHHKSGDVRRLNGVIP RMNITPNPLAQETASDKNNSGLHQNGLHHAQPYHPPGTPTLMHKRLDYHQ QPPPVPPHSAYYQQAPTHQPSPMMERSVRGHQQPGGFHMEEGTPTPTRIP SLRRQRRTSGNQQVHNSHSNLNIGLSHHNNNNNNLPPHHQHLHHHPGHPG GLVGIPIVPGSPRVQRSPMPSRAMIKRTRLGSHTDNISSGSLNSIEV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21949-PA | 1001 | GF21949-PA | 460..1001 | 9..547 | 1755 | 72.7 | Plus |
Dana\GF14467-PA | 880 | GF14467-PA | 458..753 | 15..326 | 778 | 49.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12612-PA | 1103 | GG12612-PA | 464..817 | 15..368 | 1765 | 93.2 | Plus |
Dere\GG23567-PA | 879 | GG23567-PA | 459..796 | 17..382 | 749 | 46.4 | Plus |
Dere\GG12612-PA | 1103 | GG12612-PA | 923..1103 | 367..547 | 730 | 96.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12751-PA | 1292 | GH12751-PA | 540..929 | 8..368 | 1082 | 62.5 | Plus |
Dgri\GH11362-PA | 888 | GH11362-PA | 444..736 | 13..326 | 783 | 53.7 | Plus |
Dgri\GH12751-PA | 1292 | GH12751-PA | 1247..1292 | 502..547 | 212 | 91.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
boi-PA | 547 | CG32796-PA | 1..547 | 1..547 | 2930 | 100 | Plus |
boi-PF | 998 | CG32796-PF | 466..998 | 15..547 | 2850 | 99.8 | Plus |
boi-PE | 998 | CG32796-PE | 466..998 | 15..547 | 2850 | 99.8 | Plus |
boi-PB | 998 | CG32796-PB | 466..998 | 15..547 | 2850 | 99.8 | Plus |
boi-PG | 1105 | CG32796-PG | 466..821 | 15..370 | 1846 | 99.2 | Plus |
boi-PG | 1105 | CG32796-PG | 908..1105 | 350..547 | 1022 | 92.4 | Plus |
ihog-PA | 886 | CG9211-PA | 461..886 | 13..547 | 791 | 38.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15895-PA | 1068 | GI15895-PA | 467..971 | 8..471 | 1304 | 60 | Plus |
Dmoj\GI17739-PA | 897 | GI17739-PA | 447..750 | 4..326 | 769 | 49.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14456-PA | 736 | GL14456-PA | 351..726 | 107..453 | 1236 | 70.5 | Plus |
Dper\GL25599-PA | 906 | GL25599-PA | 466..807 | 15..375 | 725 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA22276-PA | 1026 | GA22276-PA | 472..1026 | 17..547 | 1722 | 69.2 | Plus |
Dpse\GA21616-PA | 903 | GA21616-PA | 466..804 | 15..375 | 730 | 46.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18878-PA | 998 | GM18878-PA | 467..998 | 15..547 | 2795 | 98.1 | Plus |
Dsec\GM13730-PA | 880 | GM13730-PA | 459..749 | 17..326 | 752 | 50.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16363-PA | 998 | GD16363-PA | 467..998 | 15..547 | 2805 | 98.5 | Plus |
Dsim\GD22528-PA | 713 | GD22528-PA | 292..582 | 17..326 | 737 | 49.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16643-PA | 1042 | GJ16643-PA | 469..937 | 11..462 | 1335 | 64.9 | Plus |
Dvir\GJ17563-PA | 907 | GJ17563-PA | 462..757 | 13..326 | 805 | 53.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24917-PA | 1040 | GK24917-PA | 477..1040 | 5..547 | 1448 | 62.8 | Plus |
Dwil\GK24246-PA | 881 | GK24246-PA | 448..753 | 17..335 | 720 | 50.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16943-PA | 1103 | GE16943-PA | 466..818 | 15..368 | 1726 | 91.3 | Plus |
Dyak\GE16943-PA | 1103 | GE16943-PA | 926..1103 | 367..547 | 757 | 94.5 | Plus |
Dyak\GE18390-PA | 880 | GE18390-PA | 459..749 | 17..326 | 737 | 50.2 | Plus |