Clone RE01910 Report

Search the DGRC for RE01910

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:19
Well:10
Vector:pFlc-1
Associated Gene/Transcriptboi-RA
Protein status:RE01910.pep: gold
Preliminary Size:2121
Sequenced Size:2731

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13756 2002-01-01 Sim4 clustering to Release 2
CG32796 2002-03-28 Blastp of sequenced clone
CG32796 2003-01-01 Sim4 clustering to Release 3
boi 2008-04-29 Release 5.5 accounting
boi 2008-08-15 Release 5.9 accounting
boi 2008-12-18 5.12 accounting

Clone Sequence Records

RE01910.complete Sequence

2731 bp (2731 high quality bases) assembled on 2002-03-28

GenBank Submission: AY094843

> RE01910.complete
AGTCTATCGATAATGTTGGTCTTTTACACGTTTAATTTTAACAAGTTAAC
TTCTGCAGCATTTTTAACAATTTACATTTTTGTATCTATAAATTTATTGT
TCCGTCAGTTGCTTAGTGTTCATGAGCTTTCTGAATAGCAATTATCCGAT
CTTATTCCTTATCATCGATTTTATATGAAAATGTACATCGATGATCTGGT
CTGGCAACGCCAGATATTCAAATGTTCAGAATTCGAGCATGGTGCCTCCG
TCACGACCCAATGTCACCCGTCTGTCGGACGAGTCCGTGATGCTGCGCTG
GAGTGTGCCACAAAACTCTGGACTCCAGATCACCTTTTTCAAGGTGCAGT
ATCGCATGTTGGGCGACGGAAAAAATCGGAGGAAGAACTGGCAGACGACC
AGCGACAATATCCCGTACGGAAACGCGCACGGATCCGGGCCTGGCCAGGG
GAACAGTCACTGGCGGGCGCGGAACCGGGACAGGGAGTATGAAATGGGCA
ATCCGCCCAAGAACTTCACCTCCTCCGTTACGGGACTGACCGCCGGCAAG
TACTACCGCTTCCGGATCGTGGCGGTGTACTCCAATAACGACAACAAGGA
GGGCAACACCTCCCTCAAGTTCTTCCTGCAGAATGGAACGTCCAAGTCGA
ATCTGCCAGTGCCGGAACTACGCGAGGTGGAGACGCTTTCCGAGTCGGCC
GTGGTGCTCCATTGGTCCCTGGTATCCTCGACTCAAAATGAGGATATAGA
CGGGTACTATGCCTACTATAGGCCAGCGGACTCAGCAGCGGAGTATTTGA
AGGCCACGGTGGATGGCGGAATGAGCAGGAGCTTCAAGATAGACCTCCTT
CGTCCAGGAACCCCTTATGAGTTCAAATTGCAATCGTTCAACTCCGACGC
AGCCTCTGAATTCAGTGCTATTCGGCAAGCGAGGACCAGAAAAACGCACG
AGCAACCGGCTTCATCTTCGGCCACGCCAGTGCCAGCCAATAAGGCAGTG
GAACAGCACCAGAACTCCTTATATCCACTGATCGCAGGTGCCGCTGGCGG
AGGCATACTACTCCTCATCGCCTCATTGGTGGTCTGCCTTTGCCTAAAGA
GACGGGAAAACTCTCAGCCGGAGGATGAGAACAAACCGCAATTGGAACAC
ATTCAAGCGGACTTTGTTACCTCCGCCGTCCTGGGAGTTGGTGGCCACCA
CAAAAGTGGCGATGTAAGGCGCCTCAACGGAGTGATTCCGAGGATGAATA
TTACGCCCAATCCGCTGGCCCAGGAAACGGCATCCGATAAGAACAACTCT
GGACTGCATCAGAATGGCCTTCACCACGCACAGCCGTACCATCCGCCTGG
CACGCCCACTCTGATGCACAAGCGACTGGACTACCACCAGCAGCCGCCGC
CGGTGCCTCCGCACTCGGCCTATTACCAACAGGCACCCACGCACCAGCCG
TCGCCGATGATGGAGCGCAGTGTCAGGGGTCACCAGCAGCCCGGGGGCTT
TCATATGGAGGAGGGCACACCCACGCCGACCAGGATACCATCCCTGCGGC
GACAGCGACGCACCTCGGGCAACCAGCAGGTGCACAACAGCCACAGCAAT
CTCAATATTGGCCTGAGCCACCACAACAACAACAACAACAACCTGCCGCC
GCACCACCAGCATCTGCACCACCACCCCGGCCATCCGGGTGGCCTGGTGG
GCATACCCATCGTGCCAGGGAGCCCTAGGGTCCAGAGATCGCCGATGCCG
AGCAGGGCGATGATCAAGAGGACGCGCCTGGGCAGCCACACGGACAACAT
ATCGTCGGGCAGTCTGAACAGTATTGAGGTGTGATGGCTCGCAGAGGAGG
CAATTAACTAGTGGACTAGTGGGCGGAGCAGCACAACGAGGAGAAATATA
CCTAAGCGGCAAGCGAAAGTGGTTCCCCAAAAACAGACAGTTTCAAGTAG
ACTTAAGGATCCGAAACTAGATGTGTATTATTGAGATAATCGTAGGACAG
GTCGGCAGAGCAGCTCGAAACCCTCGAATATTAGCTTTAAGGCACCCGGT
ACTGTTTAGTTTTCCAAAAAACCAATTAATTTGGCCAATCATTAAGCTTA
GAACTAGGGAATTTGCCATTAACAGAAGTTTCTGTCGTTTCAAATGCTCG
AGTAACTTTGTGCTAAAACACTAGTAATCAAGTTTTGTTTTCATTTTGAG
CTCATTAAAATGTATTTCGAGCAGAACGTTTAATTAAAAGAAAAAAACAG
CTAAGCAGCTAAGTCGTTAAACGTTAATGCTGCTTCGTTTTGTTTTAGTT
AAATATTGAATTTGAAAATATACAAACTTTAGTATAAGGAATTGGTAATG
TAAGACTTTTTTCGTTGCTGCCGGCCAGATAGTCAGTAGAATTACTAATG
TTAAGTTTTTTTTTTTATTATTGATAGAACTATTTCGGGGGCCAAATTTT
ATCTCGAATAAGCCCTGTAGCATAGCGTTATTTATTTATTGCAGTGTAAA
CGTCAGGCGTCAGCAACTCAAATTGATTAGTTCAATTAACAAGCAACCTA
ATGTACGTTTAAGTCAAACCAACTATATAGCATTAAGTTAATACATTTCT
AGATGTGACTAATACACAAAACCCAAGAGAGAAGCATCCTAAACTCGATT
TAAGCTCATAGGCGGCAGTTTTAAACGAATATGCGAGTCCTGAAATTAAA
AAGTGAATCTTTAAACAAAAAAAAAAAAAAA

RE01910.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
boi-RA 2721 boi-RA 3..2717 3..2717 13560 99.9 Plus
boi-RB 4312 boi-RB 1825..4308 234..2717 12405 99.9 Plus
boi-RD 4522 boi-RD 3093..4518 1292..2717 7115 99.9 Plus
boi-RD 4522 boi-RD 1699..2757 234..1292 5295 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:51:39
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2338059..2339485 2716..1290 7030 99.5 Minus
chrX 22417052 chrX 2340780..2341487 941..234 3525 99.9 Minus
chrX 22417052 chrX 2341547..2341777 233..3 1155 100 Minus
chrX 22417052 chrX 2340532..2340714 1124..942 915 100 Minus
chrX 22417052 chrX 2340301..2340468 1291..1124 840 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:25:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:51:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2444168..2445595 2717..1290 7125 99.9 Minus
X 23542271 X 2446890..2447597 941..234 3540 100 Minus
X 23542271 X 2447657..2447887 233..3 1155 100 Minus
X 23542271 X 2446642..2446824 1124..942 915 100 Minus
X 23542271 X 2446411..2446578 1291..1124 840 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2452266..2453693 2717..1290 7125 99.9 Minus
X 23527363 X 2454988..2455695 941..234 3540 100 Minus
X 23527363 X 2455755..2455985 233..3 1155 100 Minus
X 23527363 X 2454740..2454922 1124..942 915 100 Minus
X 23527363 X 2454509..2454676 1291..1124 840 100 Minus
Blast to na_te.dros performed 2019-03-16 11:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 5393..5653 2425..2180 117 55.5 Minus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 5175..5291 2428..2315 115 63 Minus

RE01910.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:52:21 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2340301..2340467 1125..1291 100 <- Minus
chrX 2340532..2340714 942..1124 100 <- Minus
chrX 2338059..2339483 1292..2716 98 <- Minus
chrX 2340780..2341487 234..941 99 <- Minus
chrX 2341547..2341778 1..233 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:46:11 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
boi-RA 1..1644 191..1834 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:23:49 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
boi-RA 1..1644 191..1834 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:08:34 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
boi-RA 1..1644 191..1834 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:59:59 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
boi-RA 1..1644 191..1834 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:40 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
boi-RA 1..1644 191..1834 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:50:40 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
boi-RA 2..2715 3..2716 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:23:49 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
boi-RA 2..2715 3..2716 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:08:34 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
boi-RA 2..2715 3..2716 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:59:59 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
boi-RA 2..2715 3..2716 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:40 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
boi-RA 4..2719 1..2716 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:21 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
X 2447657..2447888 1..233 99   Minus
X 2444169..2445593 1292..2716 99 <- Minus
X 2446411..2446577 1125..1291 100 <- Minus
X 2446642..2446824 942..1124 100 <- Minus
X 2446890..2447597 234..941 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:21 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
X 2447657..2447888 1..233 99   Minus
X 2444169..2445593 1292..2716 99 <- Minus
X 2446411..2446577 1125..1291 100 <- Minus
X 2446642..2446824 942..1124 100 <- Minus
X 2446890..2447597 234..941 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:21 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
X 2447657..2447888 1..233 99   Minus
X 2444169..2445593 1292..2716 99 <- Minus
X 2446411..2446577 1125..1291 100 <- Minus
X 2446642..2446824 942..1124 100 <- Minus
X 2446890..2447597 234..941 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:08:34 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2338202..2339626 1292..2716 99 <- Minus
arm_X 2340444..2340610 1125..1291 100 <- Minus
arm_X 2340675..2340857 942..1124 100 <- Minus
arm_X 2340923..2341630 234..941 100 <- Minus
arm_X 2341690..2341921 1..233 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:32:56 Download gff for RE01910.complete
Subject Subject Range Query Range Percent Splice Strand
X 2452267..2453691 1292..2716 99 <- Minus
X 2454509..2454675 1125..1291 100 <- Minus
X 2454740..2454922 942..1124 100 <- Minus
X 2454988..2455695 234..941 100 <- Minus
X 2455755..2455986 1..233 99   Minus

RE01910.hyp Sequence

Translation from 190 to 1833

> RE01910.hyp
MIWSGNARYSNVQNSSMVPPSRPNVTRLSDESVMLRWSVPQNSGLQITFF
KVQYRMLGDGKNRRKNWQTTSDNIPYGNAHGSGPGQGNSHWRARNRDREY
EMGNPPKNFTSSVTGLTAGKYYRFRIVAVYSNNDNKEGNTSLKFFLQNGT
SKSNLPVPELREVETLSESAVVLHWSLVSSTQNEDIDGYYAYYRPADSAA
EYLKATVDGGMSRSFKIDLLRPGTPYEFKLQSFNSDAASEFSAIRQARTR
KTHEQPASSSATPVPANKAVEQHQNSLYPLIAGAAGGGILLLIASLVVCL
CLKRRENSQPEDENKPQLEHIQADFVTSAVLGVGGHHKSGDVRRLNGVIP
RMNITPNPLAQETASDKNNSGLHQNGLHHAQPYHPPGTPTLMHKRLDYHQ
QPPPVPPHSAYYQQAPTHQPSPMMERSVRGHQQPGGFHMEEGTPTPTRIP
SLRRQRRTSGNQQVHNSHSNLNIGLSHHNNNNNNLPPHHQHLHHHPGHPG
GLVGIPIVPGSPRVQRSPMPSRAMIKRTRLGSHTDNISSGSLNSIEV*

RE01910.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
boi-PA 547 CG32796-PA 1..547 1..547 2930 100 Plus
boi-PF 998 CG32796-PF 466..998 15..547 2850 99.8 Plus
boi-PE 998 CG32796-PE 466..998 15..547 2850 99.8 Plus
boi-PB 998 CG32796-PB 466..998 15..547 2850 99.8 Plus
boi-PG 1105 CG32796-PG 466..821 15..370 1846 99.2 Plus

RE01910.pep Sequence

Translation from 190 to 1833

> RE01910.pep
MIWSGNARYSNVQNSSMVPPSRPNVTRLSDESVMLRWSVPQNSGLQITFF
KVQYRMLGDGKNRRKNWQTTSDNIPYGNAHGSGPGQGNSHWRARNRDREY
EMGNPPKNFTSSVTGLTAGKYYRFRIVAVYSNNDNKEGNTSLKFFLQNGT
SKSNLPVPELREVETLSESAVVLHWSLVSSTQNEDIDGYYAYYRPADSAA
EYLKATVDGGMSRSFKIDLLRPGTPYEFKLQSFNSDAASEFSAIRQARTR
KTHEQPASSSATPVPANKAVEQHQNSLYPLIAGAAGGGILLLIASLVVCL
CLKRRENSQPEDENKPQLEHIQADFVTSAVLGVGGHHKSGDVRRLNGVIP
RMNITPNPLAQETASDKNNSGLHQNGLHHAQPYHPPGTPTLMHKRLDYHQ
QPPPVPPHSAYYQQAPTHQPSPMMERSVRGHQQPGGFHMEEGTPTPTRIP
SLRRQRRTSGNQQVHNSHSNLNIGLSHHNNNNNNLPPHHQHLHHHPGHPG
GLVGIPIVPGSPRVQRSPMPSRAMIKRTRLGSHTDNISSGSLNSIEV*

RE01910.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21949-PA 1001 GF21949-PA 460..1001 9..547 1755 72.7 Plus
Dana\GF14467-PA 880 GF14467-PA 458..753 15..326 778 49.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12612-PA 1103 GG12612-PA 464..817 15..368 1765 93.2 Plus
Dere\GG23567-PA 879 GG23567-PA 459..796 17..382 749 46.4 Plus
Dere\GG12612-PA 1103 GG12612-PA 923..1103 367..547 730 96.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12751-PA 1292 GH12751-PA 540..929 8..368 1082 62.5 Plus
Dgri\GH11362-PA 888 GH11362-PA 444..736 13..326 783 53.7 Plus
Dgri\GH12751-PA 1292 GH12751-PA 1247..1292 502..547 212 91.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
boi-PA 547 CG32796-PA 1..547 1..547 2930 100 Plus
boi-PF 998 CG32796-PF 466..998 15..547 2850 99.8 Plus
boi-PE 998 CG32796-PE 466..998 15..547 2850 99.8 Plus
boi-PB 998 CG32796-PB 466..998 15..547 2850 99.8 Plus
boi-PG 1105 CG32796-PG 466..821 15..370 1846 99.2 Plus
boi-PG 1105 CG32796-PG 908..1105 350..547 1022 92.4 Plus
ihog-PA 886 CG9211-PA 461..886 13..547 791 38.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15895-PA 1068 GI15895-PA 467..971 8..471 1304 60 Plus
Dmoj\GI17739-PA 897 GI17739-PA 447..750 4..326 769 49.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14456-PA 736 GL14456-PA 351..726 107..453 1236 70.5 Plus
Dper\GL25599-PA 906 GL25599-PA 466..807 15..375 725 46.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22276-PA 1026 GA22276-PA 472..1026 17..547 1722 69.2 Plus
Dpse\GA21616-PA 903 GA21616-PA 466..804 15..375 730 46.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18878-PA 998 GM18878-PA 467..998 15..547 2795 98.1 Plus
Dsec\GM13730-PA 880 GM13730-PA 459..749 17..326 752 50.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16363-PA 998 GD16363-PA 467..998 15..547 2805 98.5 Plus
Dsim\GD22528-PA 713 GD22528-PA 292..582 17..326 737 49.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16643-PA 1042 GJ16643-PA 469..937 11..462 1335 64.9 Plus
Dvir\GJ17563-PA 907 GJ17563-PA 462..757 13..326 805 53.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24917-PA 1040 GK24917-PA 477..1040 5..547 1448 62.8 Plus
Dwil\GK24246-PA 881 GK24246-PA 448..753 17..335 720 50.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16943-PA 1103 GE16943-PA 466..818 15..368 1726 91.3 Plus
Dyak\GE16943-PA 1103 GE16943-PA 926..1103 367..547 757 94.5 Plus
Dyak\GE18390-PA 880 GE18390-PA 459..749 17..326 737 50.2 Plus