BDGP Sequence Production Resources |
Search the DGRC for RE01995
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 19 |
Well: | 95 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG34140-RA |
Protein status: | RE01995.pep: gold |
Sequenced Size: | 1745 |
Gene | Date | Evidence |
---|---|---|
CG34140-RA | 2009-02-10 | Manual selection by Sue Celniker |
1745 bp assembled on 2009-05-26
GenBank Submission: BT088434.1
> RE01995.complete AGTTGCCCAAGCCCATCTCTAGCGATATGGATGGTGGTTGTGGGTCGTGC TCTATAACATGTATAGGTATTTGTTGAACATTTCTTACATCGGCACGACT TTTCGTGGTATTCAAAAGACGGTGAACAAGCTGGAGCAGTCCCGCCTGGA CACAAAGTCCATACAAGGCTGTTTGGAGCTGGCGTTGCAGGTTTTTCACC CAACAAACGAAATACACACCGTGCTGTCCAGTCGAACAGACGCCGGTGTA CACGCCCTGCACTCCACGGTGCAGGTGGACTTGGAGAGGCCTAATGGGCA GCCCTATGATACAACTATATTAACTGGTGTGCTCAACCGAACCCTTAACA AACAGCGTCTTCCCATCCGAGTGCTCAGCAGTAAGTTGGTGGCCAACTCC TTCCACTGCCGCTACGACGCCATTGGACGAACCTATCTCTATCGCTTTGC CGTGGCAAAGGTACCAACCCTGGGAGATTGCAGTCTCCGGAATAGGTCGT TCGAGACCTTTATACCAGTTGAAGAAATCGATCGTTGTTACTTTCTGCAA TCTTCTAGCTTCGATATCAAAAGAGTCCAGGCTGCAGCTCGAATGTTTAT CGGCGTCCACGACTTTCGAACTTTCATGAGTGTTAGCCGACAGAAAGTTT GTCGGGATCACCCAATGTTTACAGTGCGCAAAATCGACGAGATTAATATT CGTCCTGGTGAAACACGTGCATTGTCTTCGAACGCTATTCAGGCCGCTGA AACATATAATTATTGGGACATCGAGATCAGGGCTAAATCATTTCTTTACA AACAAGTAAGGCGCATTGTCGGCGCGCTAATCGCTTTGGGTAACGGACGT ATCGACGAGAGGTGCCTATATCAGATGCTCACCGTTCCCTCGAAGAATTC TTGGGATCACCGTGTGCTCCTGGCTCCAGCCTGTGGGCTTTACCTTTGCA GAGTGCACTACCGAGAAACGGACATTTAATACCGCTATGATACTGCTGTA TGAGCTGCAAAGGCGAATGGGCAACCTGAGACCCACCGCCACGGTTGTGA CCACCCCCACCGGTGTACGCTACATTGAGCGAAGCACTTCATCCGTCTGC GTGGAGGACATTGCGCACTGCTCCCAGCAACTGGATCCGCGTGAATACGG CTTTGTCGTGGATACCAAGCCGGACTCTGTGCCCGCCTGCATTCTGAGCG ACTTTCTCTACCTGGGCTCGCAGGATGCAGTTAGCGCGGATAACATCATA AAATATAAGATAACTCACATCCTGAGTGTCGGCATACAGACGCCCGAGGT GGAGTGGCCCTTACCCGTAAATTGTACATTTTTGCCCTGCCTGGATCTGC CGGAAACCAACCTGATGAACTACATCTTGCCCGCGTCAATGGAGTTTATT GAAGATGCGCACAGATCGCAGGGTTGCGTGCTCGTCCACTGCAACGCAGG CGTTTCGCGATCCCCCTCTGTGGTAATCGGTTATTTAATGCAGCGCCGTG ACATGTGCTACGAAGATGCATACAATCTGGTAAAATCATGGAGACCGTGT ATTCAGCCCAATGCGGGATTCATACAACAGTTAAAGAGGTCTGATTAATA GTTTATGATACTGCATATGATAAGTAATTATGAATGTTGTTCTGTTTTTT GTTTGTGGGTTTTAGTTACTAATCCACATTTGTTGTACAACACAACGATA TTATCCACTAAACTCTCAAGTTTTAAACATAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 182484..183664 | 1730..550 | 5905 | 100 | Minus |
chr3L | 24539361 | chr3L | 183720..184035 | 549..234 | 1565 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 184094..184223 | 234..105 | 650 | 100 | Minus |
chr3L | 24539361 | chr3L | 184280..184381 | 105..4 | 510 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 182514..183702 | 1738..550 | 5930 | 99.9 | Minus |
3L | 28110227 | 3L | 183758..184073 | 549..234 | 1565 | 99.7 | Minus |
3L | 28110227 | 3L | 184132..184261 | 234..105 | 650 | 100 | Minus |
3L | 28110227 | 3L | 184318..184419 | 105..4 | 510 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 182514..183702 | 1738..550 | 5930 | 99.9 | Minus |
3L | 28103327 | 3L | 183758..184073 | 549..234 | 1565 | 99.6 | Minus |
3L | 28103327 | 3L | 184132..184261 | 234..105 | 650 | 100 | Minus |
3L | 28103327 | 3L | 184318..184419 | 105..4 | 510 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 182484..183664 | 550..1730 | 100 | <- | Minus |
chr3L | 183720..184034 | 235..549 | 99 | <- | Minus |
chr3L | 184094..184222 | 106..234 | 100 | <- | Minus |
chr3L | 184280..184384 | 1..105 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34140-RA | 1..921 | 59..979 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34140-RA | 1..921 | 59..979 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34140-RA | 1..921 | 59..979 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34140-RA | 1..921 | 59..979 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Mkp-RB | 1..1730 | 1..1730 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34140-RA | 1..1730 | 1..1730 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34140-RA | 1..1730 | 1..1730 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG34140-RA | 1..1730 | 1..1730 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 182522..183702 | 550..1730 | 100 | <- | Minus |
3L | 183758..184072 | 235..549 | 99 | <- | Minus |
3L | 184132..184260 | 106..234 | 100 | <- | Minus |
3L | 184318..184422 | 1..105 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 182522..183702 | 550..1730 | 100 | <- | Minus |
3L | 183758..184072 | 235..549 | 99 | <- | Minus |
3L | 184132..184260 | 106..234 | 100 | <- | Minus |
3L | 184318..184422 | 1..105 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 182522..183702 | 550..1730 | 100 | <- | Minus |
3L | 183758..184072 | 235..549 | 99 | <- | Minus |
3L | 184132..184260 | 106..234 | 100 | <- | Minus |
3L | 184318..184422 | 1..105 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 182522..183702 | 550..1730 | 100 | <- | Minus |
arm_3L | 183758..184072 | 235..549 | 99 | <- | Minus |
arm_3L | 184132..184260 | 106..234 | 100 | <- | Minus |
arm_3L | 184318..184422 | 1..105 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 184132..184260 | 106..234 | 100 | <- | Minus |
3L | 184318..184422 | 1..105 | 99 | Minus | |
3L | 182522..183702 | 550..1730 | 100 | <- | Minus |
3L | 183758..184072 | 235..549 | 99 | <- | Minus |
Translation from 58 to 978
> RE01995.pep MYRYLLNISYIGTTFRGIQKTVNKLEQSRLDTKSIQGCLELALQVFHPTN EIHTVLSSRTDAGVHALHSTVQVDLERPNGQPYDTTILTGVLNRTLNKQR LPIRVLSSKLVANSFHCRYDAIGRTYLYRFAVAKVPTLGDCSLRNRSFET FIPVEEIDRCYFLQSSSFDIKRVQAAARMFIGVHDFRTFMSVSRQKVCRD HPMFTVRKIDEINIRPGETRALSSNAIQAAETYNYWDIEIRAKSFLYKQV RRIVGALIALGNGRIDERCLYQMLTVPSKNSWDHRVLLAPACGLYLCRVH YRETDI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24924-PA | 307 | GF24924-PA | 1..307 | 1..305 | 1233 | 76.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25359-PB | 288 | GG25359-PB | 1..283 | 1..283 | 1423 | 92.9 | Plus |
Dere\GG25359-PA | 499 | GG25359-PA | 1..285 | 1..285 | 1419 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH25313-PB | 317 | GH25313-PB | 1..307 | 1..304 | 1255 | 74.6 | Plus |
Dgri\GH25313-PA | 496 | GH25313-PA | 1..286 | 1..283 | 1150 | 73.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG34140-PA | 306 | CG34140-PA | 1..306 | 1..306 | 1590 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24889-PB | 320 | GI24889-PB | 1..310 | 1..304 | 1269 | 76.1 | Plus |
Dmoj\GI24889-PA | 499 | GI24889-PA | 1..292 | 1..286 | 1176 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16086-PA | 504 | GL16086-PA | 1..298 | 1..297 | 1283 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20054-PA | 504 | GA20054-PA | 1..298 | 1..297 | 1282 | 78.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14299-PA | 499 | GM14299-PA | 1..285 | 1..285 | 1452 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13536-PA | 499 | GD13536-PA | 1..285 | 1..285 | 1460 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12898-PA | 513 | GJ12898-PA | 1..301 | 1..298 | 1197 | 73.8 | Plus |
Translation from 58 to 978
> RE01995.hyp MYRYLLNISYIGTTFRGIQKTVNKLEQSRLDTKSIQGCLELALQVFHPTN EIHTVLSSRTDAGVHALHSTVQVDLERPNGQPYDTTILTGVLNRTLNKQR LPIRVLSSKLVANSFHCRYDAIGRTYLYRFAVAKVPTLGDCSLRNRSFET FIPVEEIDRCYFLQSSSFDIKRVQAAARMFIGVHDFRTFMSVSRQKVCRD HPMFTVRKIDEINIRPGETRALSSNAIQAAETYNYWDIEIRAKSFLYKQV RRIVGALIALGNGRIDERCLYQMLTVPSKNSWDHRVLLAPACGLYLCRVH YRETDI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG34140-PA | 306 | CG34140-PA | 1..306 | 1..306 | 1590 | 100 | Plus |