Clone RE01995 Report

Search the DGRC for RE01995

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:19
Well:95
Vector:pFlc-1
Associated Gene/TranscriptCG34140-RA
Protein status:RE01995.pep: gold
Sequenced Size:1745

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG34140-RA 2009-02-10 Manual selection by Sue Celniker

Clone Sequence Records

RE01995.complete Sequence

1745 bp assembled on 2009-05-26

GenBank Submission: BT088434.1

> RE01995.complete
AGTTGCCCAAGCCCATCTCTAGCGATATGGATGGTGGTTGTGGGTCGTGC
TCTATAACATGTATAGGTATTTGTTGAACATTTCTTACATCGGCACGACT
TTTCGTGGTATTCAAAAGACGGTGAACAAGCTGGAGCAGTCCCGCCTGGA
CACAAAGTCCATACAAGGCTGTTTGGAGCTGGCGTTGCAGGTTTTTCACC
CAACAAACGAAATACACACCGTGCTGTCCAGTCGAACAGACGCCGGTGTA
CACGCCCTGCACTCCACGGTGCAGGTGGACTTGGAGAGGCCTAATGGGCA
GCCCTATGATACAACTATATTAACTGGTGTGCTCAACCGAACCCTTAACA
AACAGCGTCTTCCCATCCGAGTGCTCAGCAGTAAGTTGGTGGCCAACTCC
TTCCACTGCCGCTACGACGCCATTGGACGAACCTATCTCTATCGCTTTGC
CGTGGCAAAGGTACCAACCCTGGGAGATTGCAGTCTCCGGAATAGGTCGT
TCGAGACCTTTATACCAGTTGAAGAAATCGATCGTTGTTACTTTCTGCAA
TCTTCTAGCTTCGATATCAAAAGAGTCCAGGCTGCAGCTCGAATGTTTAT
CGGCGTCCACGACTTTCGAACTTTCATGAGTGTTAGCCGACAGAAAGTTT
GTCGGGATCACCCAATGTTTACAGTGCGCAAAATCGACGAGATTAATATT
CGTCCTGGTGAAACACGTGCATTGTCTTCGAACGCTATTCAGGCCGCTGA
AACATATAATTATTGGGACATCGAGATCAGGGCTAAATCATTTCTTTACA
AACAAGTAAGGCGCATTGTCGGCGCGCTAATCGCTTTGGGTAACGGACGT
ATCGACGAGAGGTGCCTATATCAGATGCTCACCGTTCCCTCGAAGAATTC
TTGGGATCACCGTGTGCTCCTGGCTCCAGCCTGTGGGCTTTACCTTTGCA
GAGTGCACTACCGAGAAACGGACATTTAATACCGCTATGATACTGCTGTA
TGAGCTGCAAAGGCGAATGGGCAACCTGAGACCCACCGCCACGGTTGTGA
CCACCCCCACCGGTGTACGCTACATTGAGCGAAGCACTTCATCCGTCTGC
GTGGAGGACATTGCGCACTGCTCCCAGCAACTGGATCCGCGTGAATACGG
CTTTGTCGTGGATACCAAGCCGGACTCTGTGCCCGCCTGCATTCTGAGCG
ACTTTCTCTACCTGGGCTCGCAGGATGCAGTTAGCGCGGATAACATCATA
AAATATAAGATAACTCACATCCTGAGTGTCGGCATACAGACGCCCGAGGT
GGAGTGGCCCTTACCCGTAAATTGTACATTTTTGCCCTGCCTGGATCTGC
CGGAAACCAACCTGATGAACTACATCTTGCCCGCGTCAATGGAGTTTATT
GAAGATGCGCACAGATCGCAGGGTTGCGTGCTCGTCCACTGCAACGCAGG
CGTTTCGCGATCCCCCTCTGTGGTAATCGGTTATTTAATGCAGCGCCGTG
ACATGTGCTACGAAGATGCATACAATCTGGTAAAATCATGGAGACCGTGT
ATTCAGCCCAATGCGGGATTCATACAACAGTTAAAGAGGTCTGATTAATA
GTTTATGATACTGCATATGATAAGTAATTATGAATGTTGTTCTGTTTTTT
GTTTGTGGGTTTTAGTTACTAATCCACATTTGTTGTACAACACAACGATA
TTATCCACTAAACTCTCAAGTTTTAAACATAAAAAAAAAAAAAAA

RE01995.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
Mkp-RB 1730 Mkp-RB 4..1730 4..1730 8620 99.9 Plus
CG34140-RA 1730 CG34140-RA 4..1730 4..1730 8620 99.9 Plus
Mkp-RA 1181 Mkp-RA 1..1181 550..1730 5905 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 182484..183664 1730..550 5905 100 Minus
chr3L 24539361 chr3L 183720..184035 549..234 1565 99.7 Minus
chr3L 24539361 chr3L 184094..184223 234..105 650 100 Minus
chr3L 24539361 chr3L 184280..184381 105..4 510 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:25:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 182514..183702 1738..550 5930 99.9 Minus
3L 28110227 3L 183758..184073 549..234 1565 99.7 Minus
3L 28110227 3L 184132..184261 234..105 650 100 Minus
3L 28110227 3L 184318..184419 105..4 510 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 182514..183702 1738..550 5930 99.9 Minus
3L 28103327 3L 183758..184073 549..234 1565 99.6 Minus
3L 28103327 3L 184132..184261 234..105 650 100 Minus
3L 28103327 3L 184318..184419 105..4 510 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:36:21 has no hits.

RE01995.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:37:10 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 182484..183664 550..1730 100 <- Minus
chr3L 183720..184034 235..549 99 <- Minus
chr3L 184094..184222 106..234 100 <- Minus
chr3L 184280..184384 1..105 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:09:39 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
CG34140-RA 1..921 59..979 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:46:28 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
CG34140-RA 1..921 59..979 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:49:50 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
CG34140-RA 1..921 59..979 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:38 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
CG34140-RA 1..921 59..979 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-26 10:38:50 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
Mkp-RB 1..1730 1..1730 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:46:28 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
CG34140-RA 1..1730 1..1730 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:50 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
CG34140-RA 1..1730 1..1730 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:38 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
CG34140-RA 1..1730 1..1730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:10 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
3L 182522..183702 550..1730 100 <- Minus
3L 183758..184072 235..549 99 <- Minus
3L 184132..184260 106..234 100 <- Minus
3L 184318..184422 1..105 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:10 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
3L 182522..183702 550..1730 100 <- Minus
3L 183758..184072 235..549 99 <- Minus
3L 184132..184260 106..234 100 <- Minus
3L 184318..184422 1..105 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:37:10 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
3L 182522..183702 550..1730 100 <- Minus
3L 183758..184072 235..549 99 <- Minus
3L 184132..184260 106..234 100 <- Minus
3L 184318..184422 1..105 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:50 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 182522..183702 550..1730 100 <- Minus
arm_3L 183758..184072 235..549 99 <- Minus
arm_3L 184132..184260 106..234 100 <- Minus
arm_3L 184318..184422 1..105 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:21:48 Download gff for RE01995.complete
Subject Subject Range Query Range Percent Splice Strand
3L 184132..184260 106..234 100 <- Minus
3L 184318..184422 1..105 99   Minus
3L 182522..183702 550..1730 100 <- Minus
3L 183758..184072 235..549 99 <- Minus

RE01995.pep Sequence

Translation from 58 to 978

> RE01995.pep
MYRYLLNISYIGTTFRGIQKTVNKLEQSRLDTKSIQGCLELALQVFHPTN
EIHTVLSSRTDAGVHALHSTVQVDLERPNGQPYDTTILTGVLNRTLNKQR
LPIRVLSSKLVANSFHCRYDAIGRTYLYRFAVAKVPTLGDCSLRNRSFET
FIPVEEIDRCYFLQSSSFDIKRVQAAARMFIGVHDFRTFMSVSRQKVCRD
HPMFTVRKIDEINIRPGETRALSSNAIQAAETYNYWDIEIRAKSFLYKQV
RRIVGALIALGNGRIDERCLYQMLTVPSKNSWDHRVLLAPACGLYLCRVH
YRETDI*

RE01995.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24924-PA 307 GF24924-PA 1..307 1..305 1233 76.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25359-PB 288 GG25359-PB 1..283 1..283 1423 92.9 Plus
Dere\GG25359-PA 499 GG25359-PA 1..285 1..285 1419 92.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:28:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH25313-PB 317 GH25313-PB 1..307 1..304 1255 74.6 Plus
Dgri\GH25313-PA 496 GH25313-PA 1..286 1..283 1150 73.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG34140-PA 306 CG34140-PA 1..306 1..306 1590 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24889-PB 320 GI24889-PB 1..310 1..304 1269 76.1 Plus
Dmoj\GI24889-PA 499 GI24889-PA 1..292 1..286 1176 75.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16086-PA 504 GL16086-PA 1..298 1..297 1283 78.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:28:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20054-PA 504 GA20054-PA 1..298 1..297 1282 78.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14299-PA 499 GM14299-PA 1..285 1..285 1452 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13536-PA 499 GD13536-PA 1..285 1..285 1460 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:28:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12898-PA 513 GJ12898-PA 1..301 1..298 1197 73.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25867-PB 313 GK25867-PB 1..306 1..305 1284 76.5 Plus
Dwil\GK25867-PA 508 GK12492-PA 1..287 1..286 1193 76 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26463-PB 306 GE26463-PB 1..306 1..306 1510 91.5 Plus
Dyak\GE26463-PA 495 GE21044-PA 1..286 1..286 1397 91.3 Plus

RE01995.hyp Sequence

Translation from 58 to 978

> RE01995.hyp
MYRYLLNISYIGTTFRGIQKTVNKLEQSRLDTKSIQGCLELALQVFHPTN
EIHTVLSSRTDAGVHALHSTVQVDLERPNGQPYDTTILTGVLNRTLNKQR
LPIRVLSSKLVANSFHCRYDAIGRTYLYRFAVAKVPTLGDCSLRNRSFET
FIPVEEIDRCYFLQSSSFDIKRVQAAARMFIGVHDFRTFMSVSRQKVCRD
HPMFTVRKIDEINIRPGETRALSSNAIQAAETYNYWDIEIRAKSFLYKQV
RRIVGALIALGNGRIDERCLYQMLTVPSKNSWDHRVLLAPACGLYLCRVH
YRETDI*

RE01995.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG34140-PA 306 CG34140-PA 1..306 1..306 1590 100 Plus