Clone RE02049 Report

Search the DGRC for RE02049

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:20
Well:49
Vector:pFlc-1
Associated Gene/TranscriptCG32694-RA
Protein status:RE02049.pep: gold
Preliminary Size:633
Sequenced Size:2460

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12634 2002-01-01 Sim4 clustering to Release 2
CG32694 2002-04-22 Blastp of sequenced clone
CG32694 2003-01-01 Sim4 clustering to Release 3
CG32694 2008-04-29 Release 5.5 accounting
CG32694 2008-08-15 Release 5.9 accounting
CG32694 2008-12-18 5.12 accounting

Clone Sequence Records

RE02049.complete Sequence

2460 bp (2460 high quality bases) assembled on 2002-04-22

GenBank Submission: AY113378

> RE02049.complete
AGTATCAATTGCAGGCCCAACAGCCCAGACCACAAAGAGAAGCAGTCGCA
GTCAGTCGCACCACCGATCCACGATCCACTGATCCACCGATCCACGCAAT
TGTTGCTGTTTCTTTTTTAGACAAAAAAGAAATATATATAATTTTTTTTT
GGGCTGTTTACATTTTGGCCAAAACGCCACACCCACACACTCCCACGTCC
CGCTCACACACACACAAACACACACGCGCACGCGACAAAAACAGCATGAG
GCAGCCAAGTAGACAGCACATCCTGGCGCTCCTGATCCTCGGCAGCGCCG
CCTGCCTCATCAGCGCCGTACCGCTACCGCAGCCCGCCAACGGTAATTCC
GAGCTGGACGTCCTCCAAATCCCGCTTGCCAATGGCAAGGAAATCGATGT
CTTGACATTGGGCGCCAAAGACCAAGAATCATTGATAGCCGATCGCAACA
AACGAACGATTGGACTGCTGCGCGAACTTTTCCCCGACATCACCAAGAAT
GGAGCCACTGATACCCAGATCGATTTGTCGGCCATCAACAAGCAATTGGA
GGAGACAATCCGTGTGGCCCGCCAGGTGAAGGAGGCGGAAGCAGCCGCCG
CCGCAGTTGCCGCCCAGTCCCTGTCCCCATCCTCGTCCTCCGCCTCCTCG
CCGGTCGCCCAGGCTCCCATTCCCCTCAAATCCAACGAGCCCATCCAGCT
GAGCTTCAACAACGAACTGCCCAGTGTCTCGCCGTCCTCCGGTGTGAACG
AAAAGGCCCTGAGCACCAATGATCTCCAGCTCTCCGAGTCCAAGTCGCCG
GCGATCGATGAACTCACCCTAGACTCTGCGGAGGAGACCGCCGATCTGGA
CGATCGCAACAAGAGTAATCTGTTCAAAAGGTTCCTCAGCTTTGGCGGTG
CGGGTCTCGCCGGCGGCTCAAGCGGCGGTGCAGGAGGTTCGCCCAGTGGC
AATGCTCTGGGAGCCGGCGGCTCCGGCAACTTCCTGCTGGATGTGGTGAG
GCTCTTTTCGGGCAGTGTTCAGACCCAGCAGGGCGATGAGGCGGCCAACT
CGGTGGGCGGCAGTGCAGGCAGCAGCAGTAGCAGCGGCAGTTTGGGCGGC
GATGGTGACGCCGATGGCGATAGCACTCGCAACGCCGATGGCTACACCGA
GGGCATTCCCGGCCCAGTCACGCGCCTCGTGGTGCTGGCCAATCGCGGTC
TGGCCAATCTCGTCCAGGATTTGATTCTGCGCGTTGCGGCCACCAGCGAG
AAGTTCGTGAACTTCAAGGCCAAGCTGATAACGGCGCTGATCTAAGGTCA
AGGGTCAGCACCGGCCACGCCCTCGCCCGAATTAGTCAAGTCACCAACCT
GTACAGAGTCAAATGCAGCAGATCATTCTCTCTAACTCGCTAGCCCCAAA
CGCCCCGAAAGTCTGTCTCTATCTCCCTCTGTCTCACCCCAGAAATAACC
CCCTTTCCAATGCCCCACACACCCACTCACAACAACCCCACACACACACA
CACACACACAAACACGGCCACTCATTCACACGGAGAGAATTTTGTTCGAT
CAAAGAAATTTCCCGGCAATGTCAACATCTTTTTTTTAAATTCATAGCAA
ATTTTTTTATAACATAAACGAAATTAGTTAAAACAAACTAAACACAAAAA
AAAAATTATAAAACCATAAGCAAAATTGGCAGAAAAAAAAACCCGAATCA
AAGAATTTTATTTATATGTATCAATAAAAGAAACAAAATCGAATCGAAAG
TATGGAAACAACATTCATATGAATATGTTTAGAAGAAGAAACGCCTGATA
CAATTATTCCTGCCCTAGTACTATATCTCTATTTTCCCTGACCCGTCTAT
CCATATCTTTAAAATTTTCAACGGCTTTTGTAAATATTTTGCTATTTGCA
AATTTTCCCCCACCACTTTTCCTAAACCCAATTTCCCTAATTTGTAATTG
ACCTCTTCTCTCCTTTTTGTGTATATTTTGTGTTCTATTAAAAAAAATCA
TGACTGTGGTGTTTTATTTACTATTATTTTTAATTATTTTAAACGAAAAC
GAAACGAAGAAGATGAATGTGAAGATAATGATGATGATGATGATGATGAA
GAAGAAAGCTAAGTGGATGCAGAAGACACGTCAAGTTTCTATTAGATGAA
ATGTAGCCGAGCTTAATGTTTTTTTTTATTTGCTGTTGTTGGTCAAAGAG
CCCCAAAAACACCCATACACAAACACGCACATTCACTGAAGCATACTCAA
TATATAAAACCGATTCGATATGCCTATTATATATATAGAACCGTTCTTGT
TCGACTTCCCTGTGTCCCCTGGATTTGTTTGTAACTCCCCATAATCCTAA
GCGAATTGTGTTTTTCTAACTATGATTTTTTTCTAGCTAGCTAAGTGAAA
CTTTCGAAAAATGTGTATAAAATAAAATAAAATGATTATAAACAAAAAAA
AAAAAAAAAA

RE02049.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG32694-RA 2471 CG32694-RA 33..2471 4..2442 12165 99.9 Plus
CG32694.a 1310 CG32694.a 33..526 4..497 2470 100 Plus
CG32694-RB 1341 CG32694-RB 5..498 4..497 2470 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9897313..9898534 1229..2442 5815 98.9 Plus
chrX 22417052 chrX 9896030..9896400 495..865 1855 100 Plus
chrX 22417052 chrX 9897015..9897243 1001..1229 1115 99.1 Plus
chrX 22417052 chrX 9884617..9884829 178..390 1065 100 Plus
chrX 22417052 chrX 9881337..9881510 4..177 870 100 Plus
chrX 22417052 chrX 9896789..9896930 860..1001 695 99.3 Plus
chrX 22417052 chrX 9890832..9890941 388..497 550 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:25:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:52:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10005672..10006885 1229..2442 6055 99.9 Plus
X 23542271 X 10004389..10004759 495..865 1855 100 Plus
X 23542271 X 10005374..10005602 1001..1229 1130 99.6 Plus
X 23542271 X 9992978..9993190 178..390 1065 100 Plus
X 23542271 X 9989699..9989872 4..177 870 100 Plus
X 23542271 X 10005148..10005289 860..1001 695 99.3 Plus
X 23542271 X 9999191..9999300 388..497 550 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10013770..10014983 1229..2442 6055 99.9 Plus
X 23527363 X 10012487..10012857 495..865 1855 100 Plus
X 23527363 X 10013472..10013700 1001..1229 1130 99.5 Plus
X 23527363 X 10001076..10001288 178..390 1065 100 Plus
X 23527363 X 9997797..9997970 4..177 870 100 Plus
X 23527363 X 10013246..10013387 860..1001 695 99.2 Plus
X 23527363 X 10007289..10007398 388..497 550 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:52:47 has no hits.

RE02049.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:53:39 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9884673..9884828 234..389 100 -> Plus
chrX 9890834..9890941 390..497 100 -> Plus
chrX 9896033..9896400 498..865 100 -> Plus
chrX 9896795..9896930 866..1001 100 -> Plus
chrX 9897016..9897069 1002..1055 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:42:44 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RC 1..1050 246..1295 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:58:01 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RC 1..1050 246..1295 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:10:24 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 1..1050 246..1295 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:51:25 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RC 1..1050 246..1295 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:31 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 1..1050 246..1295 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:42:44 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 1..2443 1..2442 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:58:01 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 1..2443 1..2442 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:10:24 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 1..2440 1..2439 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:51:25 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 1..2443 1..2442 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:31 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
CG32694-RA 1..2440 1..2439 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:53:39 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
X 10005154..10005289 866..1001 100 -> Plus
X 10005375..10005602 1002..1229 99 -> Plus
X 9999193..9999300 390..497 100 -> Plus
X 10004392..10004759 498..865 100 -> Plus
X 9989695..9989872 1..177 99 -> Plus
X 9992978..9993189 178..389 100 -> Plus
X 10005673..10006885 1230..2443 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:53:39 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
X 10005154..10005289 866..1001 100 -> Plus
X 10005375..10005602 1002..1229 99 -> Plus
X 9999193..9999300 390..497 100 -> Plus
X 10004392..10004759 498..865 100 -> Plus
X 9989695..9989872 1..177 99 -> Plus
X 9992978..9993189 178..389 100 -> Plus
X 10005673..10006885 1230..2443 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:53:39 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
X 10005154..10005289 866..1001 100 -> Plus
X 10005375..10005602 1002..1229 99 -> Plus
X 9999193..9999300 390..497 100 -> Plus
X 10004392..10004759 498..865 100 -> Plus
X 9989695..9989872 1..177 99 -> Plus
X 9992978..9993189 178..389 100 -> Plus
X 10005673..10006885 1230..2443 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:10:24 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9899187..9899322 866..1001 100 -> Plus
arm_X 9883728..9883905 1..177 99 -> Plus
arm_X 9887011..9887222 178..389 100 -> Plus
arm_X 9893226..9893333 390..497 100 -> Plus
arm_X 9899408..9899635 1002..1229 99 -> Plus
arm_X 9898425..9898792 498..865 100 -> Plus
arm_X 9899706..9900918 1230..2443 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:23:19 Download gff for RE02049.complete
Subject Subject Range Query Range Percent Splice Strand
X 10001076..10001287 178..389 100 -> Plus
X 10007291..10007398 390..497 100 -> Plus
X 10012490..10012857 498..865 100 -> Plus
X 10013252..10013387 866..1001 100 -> Plus
X 10013473..10013700 1002..1229 99 -> Plus
X 10013771..10014983 1230..2443 99   Plus
X 9997793..9997970 1..177 99 -> Plus

RE02049.hyp Sequence

Translation from 0 to 1294

> RE02049.hyp
SNQLQAQQPRPQREAVAVSRTTDPRSTDPPIHAIVAVSFLDKKEIYIIFF
WAVYILAKTPHPHTPTSRSHTHKHTRARDKNSMRQPSRQHILALLILGSA
ACLISAVPLPQPANGNSELDVLQIPLANGKEIDVLTLGAKDQESLIADRN
KRTIGLLRELFPDITKNGATDTQIDLSAINKQLEETIRVARQVKEAEAAA
AAVAAQSLSPSSSSASSPVAQAPIPLKSNEPIQLSFNNELPSVSPSSGVN
EKALSTNDLQLSESKSPAIDELTLDSAEETADLDDRNKSNLFKRFLSFGG
AGLAGGSSGGAGGSPSGNALGAGGSGNFLLDVVRLFSGSVQTQQGDEAAN
SVGGSAGSSSSSGSLGGDGDADGDSTRNADGYTEGIPGPVTRLVVLANRG
LANLVQDLILRVAATSEKFVNFKAKLITALI*

RE02049.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG32694-PC 349 CG32694-PC 1..349 83..431 1707 100 Plus
CG32694-PA 349 CG32694-PA 1..349 83..431 1707 100 Plus
CG32694-PF 344 CG32694-PF 1..344 83..431 1666 98.6 Plus
CG32694-PG 195 CG32694-PG 1..185 83..248 435 55.7 Plus
CG32694-PE 187 CG32694-PE 1..142 83..217 429 70.4 Plus

RE02049.pep Sequence

Translation from 245 to 1294

> RE02049.pep
MRQPSRQHILALLILGSAACLISAVPLPQPANGNSELDVLQIPLANGKEI
DVLTLGAKDQESLIADRNKRTIGLLRELFPDITKNGATDTQIDLSAINKQ
LEETIRVARQVKEAEAAAAAVAAQSLSPSSSSASSPVAQAPIPLKSNEPI
QLSFNNELPSVSPSSGVNEKALSTNDLQLSESKSPAIDELTLDSAEETAD
LDDRNKSNLFKRFLSFGGAGLAGGSSGGAGGSPSGNALGAGGSGNFLLDV
VRLFSGSVQTQQGDEAANSVGGSAGSSSSSGSLGGDGDADGDSTRNADGY
TEGIPGPVTRLVVLANRGLANLVQDLILRVAATSEKFVNFKAKLITALI*

RE02049.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19160-PA 289 GF19160-PA 187..289 245..349 479 92.4 Plus
Dana\GF19160-PA 289 GF19160-PA 1..91 1..93 300 76.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18334-PA 450 GG18334-PA 184..450 83..349 1294 97.8 Plus
Dere\GG18334-PA 450 GG18334-PA 1..99 1..106 431 83 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11811-PA 445 GH11811-PA 188..445 85..349 833 80.7 Plus
Dgri\GH11811-PA 445 GH11811-PA 1..98 1..106 350 69.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG32694-PC 349 CG32694-PC 1..349 1..349 1707 100 Plus
CG32694-PA 349 CG32694-PA 1..349 1..349 1707 100 Plus
CG32694-PF 344 CG32694-PF 1..344 1..349 1666 98.6 Plus
CG32694-PB 364 CG32694-PB 1..226 1..207 438 48.1 Plus
CG32694-PG 195 CG32694-PG 1..185 1..166 435 55.7 Plus
CG32694-PE 187 CG32694-PE 1..142 1..135 429 70.4 Plus
CG32694-PH 167 CG32694-PH 1..84 1..84 415 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15997-PA 524 GI15997-PA 256..524 85..349 804 76.3 Plus
Dmoj\GI15997-PA 524 GI15997-PA 1..99 1..108 357 71.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22929-PA 260 GL22929-PA 1..260 85..349 685 71.1 Plus
Dper\GL16386-PA 189 GL16386-PA 1..82 1..84 360 88.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:09:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17079-PA 457 GA17079-PA 191..457 85..349 869 79.5 Plus
Dpse\GA17079-PA 457 GA17079-PA 1..97 1..106 371 76.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:09:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18828-PA 255 GM18828-PA 1..245 1..268 579 59.7 Plus
Dsec\GM18829-PA 66 GM18829-PA 1..66 284..349 332 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24704-PA 167 GD24704-PA 1..84 1..84 433 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:09:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18723-PA 553 GJ18723-PA 293..553 85..349 683 73.8 Plus
Dvir\GJ18723-PA 553 GJ18723-PA 1..99 1..108 365 72.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25367-PA 672 GK25367-PA 413..672 81..349 886 83.5 Plus
Dwil\GK25367-PA 672 GK25367-PA 1..101 1..108 361 71.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:09:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17821-PA 152 GE17821-PA 10..152 207..349 693 98.6 Plus