Clone RE02181 Report

Search the DGRC for RE02181

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:21
Well:81
Vector:pFlc-1
Associated Gene/TranscriptGlycogenin-RB
Protein status:RE02181.pep: gold
Sequenced Size:2390

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9480 2002-01-01 Sim4 clustering to Release 2
CG9480 2002-06-10 Blastp of sequenced clone
CG9480 2003-01-01 Sim4 clustering to Release 3
Glycogenin 2008-04-29 Release 5.5 accounting
Glycogenin 2008-08-15 Release 5.9 accounting
Glycogenin 2008-12-18 5.12 accounting

Clone Sequence Records

RE02181.complete Sequence

2390 bp (2390 high quality bases) assembled on 2002-06-10

GenBank Submission: AY121654

> RE02181.complete
AGATTCTCGTCATCGCTCGTGGAAGGCACATCGCAAACGCCGCTCTCGTT
CTCGAATTTATTGTGAAAGCTCAGCCGCCCACCGCCCGCCGGAAAAGTCT
CGCGAGTGTCCCGAAAAAATCGAGTTAACCCCCCAAAAAAATCTATCATA
TAAAATCCTAACAAAATGAGCAAATTCGCTTGGGTGACGCTGACGACAAA
TGACACGTACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGGG
CCAAGACCGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCAG
GCGATGCGCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCAA
TGTGCTCGACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCCG
AACTAGGCGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTTT
GAGAAGTGCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCGA
TGAGCTCTTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGGC
CGGATTGCTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACACC
TTTGCCCAGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCGG
TGACCAGGGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGACA
TTAAGAAGCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTAC
TGTTATCTGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGCA
TTTTGCCGGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACAA
AGGTGGCCAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCAG
CTGTGGTGGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCGA
AATGGCGGGTCTGGCTGGTGCTCTGTCACAGCTACGCATCGGTCAGCAGC
GCACTCCCGAACAGGAGGCCTACGAGAACCAGATGCGCCGCCAGTGCTGG
GAGTCTGGACAGATTGACTACACCGGCGCCGATTCGTTCGAGAATATCTG
GAAGAAAATATCGCAGACGCTGGAGAGGAAGACCGATAAGGAGTCGGAAG
AAACTGGTAGCTCATAGATACAAAACCGAAACTAAACAGAACAAACAAAT
GCAAATCGTTCGTTATTCGTCGTTTTGTTGCCATTTTTTTCTTGTACACG
CGCACACACGTACACACTTAACACCCACCCCTTCTCCACCCTAAAATGAA
AACCCCAAACACGCACACAATCGTATTTTATCCCCCCTCCCTCCCCACCT
TTGGGAGGCAGGCGAACTGTTGCCAATGTCAAGGAGCCGCCGGTCTAATT
GAAATTTAAGGTTTGGCCAAAAAATGTTGTCGAAACGAATTCTTCAGAGT
GTCATAAATGCAATTTTTATTTGCCTTCCCTGTTACAGCCACCCACCCCC
CCGTCCACACACGCACACACACACACACACACGCGCGCATCTTGTTAAAA
AGAATGAGCGAGAAAGCAGAGAAATTTTAATTAAGTTTTCAAATTAAACT
TTTTGCACTGCTGCTACTGCTACTGCTGCTGCTCTCGACATACGTGATGT
GATGCGATGTGTATGTGGGCGACACACTTGGCACAGTTGCCCCAATGCCC
TGCCCCTCCCCCTGCCCCTGCCAAGCCCTTGGACAAAATCGAGAAAAAAT
GAGGCCCGGCCACAAAGTTTTACACTTCATTGTGTTTTAATTGAAATTTT
TGTACTTTCACCCAGTCGTGTGCTTACCGATTTATGGCGATGACTTTCCA
GCTCATCTGCATCAAAACTCATTGTGGCATAAAGGCCATTTCCTGTCCTT
GCCCCACCTATCCCACCCCTGACTACCCTTTTTCCCTCTGCCGCCCCCAA
ACACATATGTACATATGTTTTTCCTATGAATAAAACGCAAACAATGAGTG
TATACAATAACTCTGGAAAAGATAAACGAAAACCATTTAAAATAAAGTAA
AAATCAAAAATGAAATTGTAGCCCACATGTTGTGGCTATTGTGTATATGT
ATCTATGTGTGTGTGTGTTTATGTGTGAGTTAGAGTGTGTGTGCGAAGTG
CCCCGCCCCCTTTTCGACCACTTTTCGGATCGAATTCGAGCTGAGCGTTA
AATGTTTGTTTCAAGTGTTTTGGCAGCCTAAAATTTCTATCTATATACGT
ATATATACCATTTATGTTATAATTTACATTTTGCAAATATTGTCGTAATA
TTTATTCGAGAACAACAACAACAAGAACAACAAAGAAATCCCAAACAACA
CAAACAAAAAATTTTCAATTTATGAAAAAAAAAAAAAAAA

RE02181.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:50:37
Subject Length Description Subject Range Query Range Score Percent Strand
Glycogenin.h 3782 Glycogenin.h 56..2432 1..2377 11885 100 Plus
Glycogenin-RB 2509 Glycogenin-RB 56..2432 1..2377 11885 100 Plus
Glycogenin.d 2468 Glycogenin.d 1048..2468 954..2374 7105 100 Plus
Glycogenin.d 2468 Glycogenin.d 26..979 1..954 4770 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17094872..17096300 954..2374 6510 97.6 Plus
chr2R 21145070 chr2R 17091015..17091327 173..485 1505 98.7 Plus
chr2R 21145070 chr2R 17091416..17091708 483..775 1420 99 Plus
chr2R 21145070 chr2R 17086908..17087079 1..172 860 100 Plus
chr2R 21145070 chr2R 17091768..17091949 774..955 835 97.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:25:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21208469..21209892 954..2377 7120 100 Plus
2R 25286936 2R 21204613..21204925 173..485 1565 100 Plus
2R 25286936 2R 21205009..21205301 483..775 1465 100 Plus
2R 25286936 2R 21205361..21205542 774..955 910 100 Plus
2R 25286936 2R 21200487..21200658 1..172 860 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21209668..21211091 954..2377 7120 100 Plus
2R 25260384 2R 21205812..21206124 173..485 1565 100 Plus
2R 25260384 2R 21206208..21206500 483..775 1465 100 Plus
2R 25260384 2R 21206560..21206741 774..955 910 100 Plus
2R 25260384 2R 21201686..21201857 1..172 860 100 Plus
Blast to na_te.dros performed 2019-03-16 04:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 2233..2320 1976..2069 131 64.9 Plus

RE02181.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:43:11 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17086908..17087079 1..172 100 -> Plus
chr2R 17091015..17091325 173..483 98 -> Plus
chr2R 17091417..17091706 484..773 98 -> Plus
chr2R 17091768..17091948 774..954 97 -> Plus
chr2R 17094873..17096021 955..2089 93 == Plus
chr2R 17096076..17096300 2144..2374 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:46:28 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 1..1002 166..1167 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:26:39 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 1..1002 166..1167 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:39:35 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 1..1002 166..1167 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:17:06 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 1..1002 166..1167 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:48:38 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 1..1002 166..1167 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:55:05 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 1..2374 1..2374 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:26:39 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 14..2387 1..2374 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:35 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 5..2378 1..2374 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:17:06 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 1..2374 1..2374 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:48:38 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
Glycogenin-RB 5..2378 1..2374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:43:11 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21205010..21205299 484..773 100 -> Plus
2R 21205361..21205541 774..954 100 -> Plus
2R 21200487..21200658 1..172 100 -> Plus
2R 21204613..21204923 173..483 100 -> Plus
2R 21208470..21209889 955..2374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:43:11 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21205010..21205299 484..773 100 -> Plus
2R 21205361..21205541 774..954 100 -> Plus
2R 21200487..21200658 1..172 100 -> Plus
2R 21204613..21204923 173..483 100 -> Plus
2R 21208470..21209889 955..2374 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:43:11 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21205010..21205299 484..773 100 -> Plus
2R 21205361..21205541 774..954 100 -> Plus
2R 21200487..21200658 1..172 100 -> Plus
2R 21204613..21204923 173..483 100 -> Plus
2R 21208470..21209889 955..2374 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:35 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17092118..17092428 173..483 100 -> Plus
arm_2R 17092515..17092804 484..773 100 -> Plus
arm_2R 17092866..17093046 774..954 100 -> Plus
arm_2R 17087992..17088163 1..172 100 -> Plus
arm_2R 17095975..17097394 955..2374 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:50:27 Download gff for RE02181.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21205812..21206122 173..483 100 -> Plus
2R 21206209..21206498 484..773 100 -> Plus
2R 21206560..21206740 774..954 100 -> Plus
2R 21209669..21211088 955..2374 100   Plus
2R 21201686..21201857 1..172 100 -> Plus

RE02181.hyp Sequence

Translation from 165 to 1166

> RE02181.hyp
MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDR
LKEVYNVVQEVNVLDSQDAANLALLSRPELGVTFTKLHCWRLVQFEKCVF
LDADTLVLQNCDELFEREELSAAPDVSWPDCFNSGVFVFKPSVDTFAQIT
EFAVKNGSFDGGDQGLLNQFFADWSTADIKKHLPFVYNVTAYASYCYLPA
FKQFRDKIKILHFAGKLKPWLIQFNSETKVASVSSEYAHAQDLIQLWWNI
FCENVIQSLSTEMAGLAGALSQLRIGQQRTPEQEAYENQMRRQCWESGQI
DYTGADSFENIWKKISQTLERKTDKESEETGSS*

RE02181.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Glycogenin-PB 333 CG44244-PB 1..333 1..333 1744 100 Plus
Glycogenin-PH 334 CG44244-PH 1..330 1..330 1730 100 Plus
Glycogenin-PG 356 CG44244-PG 1..356 1..333 1710 93.5 Plus
Glycogenin-PI 287 CG44244-PI 1..287 47..333 1516 100 Plus
Glycogenin-PD 545 CG44244-PD 1..326 1..329 1385 82.6 Plus

RE02181.pep Sequence

Translation from 165 to 1166

> RE02181.pep
MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDR
LKEVYNVVQEVNVLDSQDAANLALLSRPELGVTFTKLHCWRLVQFEKCVF
LDADTLVLQNCDELFEREELSAAPDVSWPDCFNSGVFVFKPSVDTFAQIT
EFAVKNGSFDGGDQGLLNQFFADWSTADIKKHLPFVYNVTAYASYCYLPA
FKQFRDKIKILHFAGKLKPWLIQFNSETKVASVSSEYAHAQDLIQLWWNI
FCENVIQSLSTEMAGLAGALSQLRIGQQRTPEQEAYENQMRRQCWESGQI
DYTGADSFENIWKKISQTLERKTDKESEETGSS*

RE02181.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12803-PA 331 GF12803-PA 1..331 1..333 1661 91.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22100-PA 558 GG22100-PA 1..263 1..263 1417 99.6 Plus
Dere\GG22100-PA 558 GG22100-PA 478..558 253..333 369 85.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21859-PA 200 GH21859-PA 1..122 1..116 519 83.6 Plus
Dgri\GH21859-PA 200 GH21859-PA 103..200 238..333 371 70.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:49
Subject Length Description Subject Range Query Range Score Percent Strand
Gyg-PB 333 CG44244-PB 1..333 1..333 1744 100 Plus
Gyg-PH 334 CG44244-PH 1..330 1..330 1730 100 Plus
Gyg-PG 356 CG44244-PG 1..356 1..333 1710 93.5 Plus
Gyg-PI 287 CG44244-PI 1..287 47..333 1516 100 Plus
Gyg-PD 545 CG44244-PD 1..326 1..329 1385 82.6 Plus
Gyg-PE 699 CG44244-PE 1..349 1..329 1381 79.4 Plus
Gyg-PD 545 CG44244-PD 465..545 253..333 367 87.7 Plus
Gyg-PE 699 CG44244-PE 488..565 253..330 353 87.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20361-PA 332 GI20361-PA 1..332 1..333 1583 87.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11328-PA 299 GL11328-PA 1..265 1..265 1342 92.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21819-PA 334 GA21819-PA 1..333 1..333 1652 90.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15817-PA 333 GM15817-PA 1..333 1..333 1770 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11576-PA 476 GD11576-PA 1..106 1..106 559 100 Plus
Dsim\GD11576-PA 476 GD11576-PA 107..200 170..263 522 100 Plus
Dsim\GD11576-PA 476 GD11576-PA 396..476 253..333 371 85.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22086-PA 286 GJ22086-PA 1..263 1..263 1288 90.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15794-PA 334 GK15794-PA 1..334 1..333 1637 90.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12180-PA 689 GE12180-PA 1..263 1..263 1417 99.2 Plus
Dyak\GE12180-PA 689 GE12180-PA 476..553 253..330 356 84.6 Plus