BDGP Sequence Production Resources |
Search the DGRC for RE02181
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 21 |
Well: | 81 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Glycogenin-RB |
Protein status: | RE02181.pep: gold |
Sequenced Size: | 2390 |
Gene | Date | Evidence |
---|---|---|
CG9480 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9480 | 2002-06-10 | Blastp of sequenced clone |
CG9480 | 2003-01-01 | Sim4 clustering to Release 3 |
Glycogenin | 2008-04-29 | Release 5.5 accounting |
Glycogenin | 2008-08-15 | Release 5.9 accounting |
Glycogenin | 2008-12-18 | 5.12 accounting |
2390 bp (2390 high quality bases) assembled on 2002-06-10
GenBank Submission: AY121654
> RE02181.complete AGATTCTCGTCATCGCTCGTGGAAGGCACATCGCAAACGCCGCTCTCGTT CTCGAATTTATTGTGAAAGCTCAGCCGCCCACCGCCCGCCGGAAAAGTCT CGCGAGTGTCCCGAAAAAATCGAGTTAACCCCCCAAAAAAATCTATCATA TAAAATCCTAACAAAATGAGCAAATTCGCTTGGGTGACGCTGACGACAAA TGACACGTACTCACTGGGTGCCTTGGTCTTGGCCCACTCACTGAAAAGGG CCAAGACCGCCCACCAGCTGGCCGTTCTGGTCACGCCCAATGTCTCGCAG GCGATGCGCGACCGACTGAAGGAGGTCTACAATGTGGTGCAGGAGGTCAA TGTGCTCGACTCACAGGATGCCGCCAATCTGGCGCTCCTCTCGCGACCCG AACTAGGCGTGACCTTCACAAAACTCCACTGCTGGCGCCTCGTTCAGTTT GAGAAGTGCGTCTTCCTGGATGCGGACACACTGGTCTTGCAAAACTGCGA TGAGCTCTTCGAGCGCGAGGAACTGTCGGCTGCTCCGGATGTCAGCTGGC CGGATTGCTTCAATTCCGGCGTGTTTGTGTTCAAACCTAGCGTGGACACC TTTGCCCAGATCACAGAGTTTGCCGTGAAGAATGGCAGCTTCGATGGCGG TGACCAGGGTCTGCTGAATCAGTTCTTTGCCGACTGGTCGACGGCGGACA TTAAGAAGCATTTGCCATTTGTGTACAATGTGACGGCTTATGCCTCGTAC TGTTATCTGCCCGCCTTCAAACAGTTCAGAGATAAGATTAAGATTTTGCA TTTTGCCGGCAAGCTGAAGCCCTGGCTGATTCAGTTCAACTCGGAAACAA AGGTGGCCAGCGTTTCGTCGGAGTATGCTCATGCCCAGGATTTGATTCAG CTGTGGTGGAACATCTTTTGCGAAAATGTCATCCAGTCCCTGTCCACCGA AATGGCGGGTCTGGCTGGTGCTCTGTCACAGCTACGCATCGGTCAGCAGC GCACTCCCGAACAGGAGGCCTACGAGAACCAGATGCGCCGCCAGTGCTGG GAGTCTGGACAGATTGACTACACCGGCGCCGATTCGTTCGAGAATATCTG GAAGAAAATATCGCAGACGCTGGAGAGGAAGACCGATAAGGAGTCGGAAG AAACTGGTAGCTCATAGATACAAAACCGAAACTAAACAGAACAAACAAAT GCAAATCGTTCGTTATTCGTCGTTTTGTTGCCATTTTTTTCTTGTACACG CGCACACACGTACACACTTAACACCCACCCCTTCTCCACCCTAAAATGAA AACCCCAAACACGCACACAATCGTATTTTATCCCCCCTCCCTCCCCACCT TTGGGAGGCAGGCGAACTGTTGCCAATGTCAAGGAGCCGCCGGTCTAATT GAAATTTAAGGTTTGGCCAAAAAATGTTGTCGAAACGAATTCTTCAGAGT GTCATAAATGCAATTTTTATTTGCCTTCCCTGTTACAGCCACCCACCCCC CCGTCCACACACGCACACACACACACACACACGCGCGCATCTTGTTAAAA AGAATGAGCGAGAAAGCAGAGAAATTTTAATTAAGTTTTCAAATTAAACT TTTTGCACTGCTGCTACTGCTACTGCTGCTGCTCTCGACATACGTGATGT GATGCGATGTGTATGTGGGCGACACACTTGGCACAGTTGCCCCAATGCCC TGCCCCTCCCCCTGCCCCTGCCAAGCCCTTGGACAAAATCGAGAAAAAAT GAGGCCCGGCCACAAAGTTTTACACTTCATTGTGTTTTAATTGAAATTTT TGTACTTTCACCCAGTCGTGTGCTTACCGATTTATGGCGATGACTTTCCA GCTCATCTGCATCAAAACTCATTGTGGCATAAAGGCCATTTCCTGTCCTT GCCCCACCTATCCCACCCCTGACTACCCTTTTTCCCTCTGCCGCCCCCAA ACACATATGTACATATGTTTTTCCTATGAATAAAACGCAAACAATGAGTG TATACAATAACTCTGGAAAAGATAAACGAAAACCATTTAAAATAAAGTAA AAATCAAAAATGAAATTGTAGCCCACATGTTGTGGCTATTGTGTATATGT ATCTATGTGTGTGTGTGTTTATGTGTGAGTTAGAGTGTGTGTGCGAAGTG CCCCGCCCCCTTTTCGACCACTTTTCGGATCGAATTCGAGCTGAGCGTTA AATGTTTGTTTCAAGTGTTTTGGCAGCCTAAAATTTCTATCTATATACGT ATATATACCATTTATGTTATAATTTACATTTTGCAAATATTGTCGTAATA TTTATTCGAGAACAACAACAACAAGAACAACAAAGAAATCCCAAACAACA CAAACAAAAAATTTTCAATTTATGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Glycogenin.h | 3782 | Glycogenin.h | 56..2432 | 1..2377 | 11885 | 100 | Plus |
Glycogenin-RB | 2509 | Glycogenin-RB | 56..2432 | 1..2377 | 11885 | 100 | Plus |
Glycogenin.d | 2468 | Glycogenin.d | 1048..2468 | 954..2374 | 7105 | 100 | Plus |
Glycogenin.d | 2468 | Glycogenin.d | 26..979 | 1..954 | 4770 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 17094872..17096300 | 954..2374 | 6510 | 97.6 | Plus |
chr2R | 21145070 | chr2R | 17091015..17091327 | 173..485 | 1505 | 98.7 | Plus |
chr2R | 21145070 | chr2R | 17091416..17091708 | 483..775 | 1420 | 99 | Plus |
chr2R | 21145070 | chr2R | 17086908..17087079 | 1..172 | 860 | 100 | Plus |
chr2R | 21145070 | chr2R | 17091768..17091949 | 774..955 | 835 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 21208469..21209892 | 954..2377 | 7120 | 100 | Plus |
2R | 25286936 | 2R | 21204613..21204925 | 173..485 | 1565 | 100 | Plus |
2R | 25286936 | 2R | 21205009..21205301 | 483..775 | 1465 | 100 | Plus |
2R | 25286936 | 2R | 21205361..21205542 | 774..955 | 910 | 100 | Plus |
2R | 25286936 | 2R | 21200487..21200658 | 1..172 | 860 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 21209668..21211091 | 954..2377 | 7120 | 100 | Plus |
2R | 25260384 | 2R | 21205812..21206124 | 173..485 | 1565 | 100 | Plus |
2R | 25260384 | 2R | 21206208..21206500 | 483..775 | 1465 | 100 | Plus |
2R | 25260384 | 2R | 21206560..21206741 | 774..955 | 910 | 100 | Plus |
2R | 25260384 | 2R | 21201686..21201857 | 1..172 | 860 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 2233..2320 | 1976..2069 | 131 | 64.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 17086908..17087079 | 1..172 | 100 | -> | Plus |
chr2R | 17091015..17091325 | 173..483 | 98 | -> | Plus |
chr2R | 17091417..17091706 | 484..773 | 98 | -> | Plus |
chr2R | 17091768..17091948 | 774..954 | 97 | -> | Plus |
chr2R | 17094873..17096021 | 955..2089 | 93 | == | Plus |
chr2R | 17096076..17096300 | 2144..2374 | 96 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Glycogenin-RB | 1..1002 | 166..1167 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Glycogenin-RB | 1..1002 | 166..1167 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Glycogenin-RB | 1..1002 | 166..1167 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Glycogenin-RB | 1..1002 | 166..1167 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Glycogenin-RB | 1..1002 | 166..1167 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Glycogenin-RB | 1..2374 | 1..2374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Glycogenin-RB | 14..2387 | 1..2374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Glycogenin-RB | 5..2378 | 1..2374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Glycogenin-RB | 1..2374 | 1..2374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Glycogenin-RB | 5..2378 | 1..2374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21205010..21205299 | 484..773 | 100 | -> | Plus |
2R | 21205361..21205541 | 774..954 | 100 | -> | Plus |
2R | 21200487..21200658 | 1..172 | 100 | -> | Plus |
2R | 21204613..21204923 | 173..483 | 100 | -> | Plus |
2R | 21208470..21209889 | 955..2374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21205010..21205299 | 484..773 | 100 | -> | Plus |
2R | 21205361..21205541 | 774..954 | 100 | -> | Plus |
2R | 21200487..21200658 | 1..172 | 100 | -> | Plus |
2R | 21204613..21204923 | 173..483 | 100 | -> | Plus |
2R | 21208470..21209889 | 955..2374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21205010..21205299 | 484..773 | 100 | -> | Plus |
2R | 21205361..21205541 | 774..954 | 100 | -> | Plus |
2R | 21200487..21200658 | 1..172 | 100 | -> | Plus |
2R | 21204613..21204923 | 173..483 | 100 | -> | Plus |
2R | 21208470..21209889 | 955..2374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 17092118..17092428 | 173..483 | 100 | -> | Plus |
arm_2R | 17092515..17092804 | 484..773 | 100 | -> | Plus |
arm_2R | 17092866..17093046 | 774..954 | 100 | -> | Plus |
arm_2R | 17087992..17088163 | 1..172 | 100 | -> | Plus |
arm_2R | 17095975..17097394 | 955..2374 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 21205812..21206122 | 173..483 | 100 | -> | Plus |
2R | 21206209..21206498 | 484..773 | 100 | -> | Plus |
2R | 21206560..21206740 | 774..954 | 100 | -> | Plus |
2R | 21209669..21211088 | 955..2374 | 100 | Plus | |
2R | 21201686..21201857 | 1..172 | 100 | -> | Plus |
Translation from 165 to 1166
> RE02181.hyp MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDR LKEVYNVVQEVNVLDSQDAANLALLSRPELGVTFTKLHCWRLVQFEKCVF LDADTLVLQNCDELFEREELSAAPDVSWPDCFNSGVFVFKPSVDTFAQIT EFAVKNGSFDGGDQGLLNQFFADWSTADIKKHLPFVYNVTAYASYCYLPA FKQFRDKIKILHFAGKLKPWLIQFNSETKVASVSSEYAHAQDLIQLWWNI FCENVIQSLSTEMAGLAGALSQLRIGQQRTPEQEAYENQMRRQCWESGQI DYTGADSFENIWKKISQTLERKTDKESEETGSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Glycogenin-PB | 333 | CG44244-PB | 1..333 | 1..333 | 1744 | 100 | Plus |
Glycogenin-PH | 334 | CG44244-PH | 1..330 | 1..330 | 1730 | 100 | Plus |
Glycogenin-PG | 356 | CG44244-PG | 1..356 | 1..333 | 1710 | 93.5 | Plus |
Glycogenin-PI | 287 | CG44244-PI | 1..287 | 47..333 | 1516 | 100 | Plus |
Glycogenin-PD | 545 | CG44244-PD | 1..326 | 1..329 | 1385 | 82.6 | Plus |
Translation from 165 to 1166
> RE02181.pep MSKFAWVTLTTNDTYSLGALVLAHSLKRAKTAHQLAVLVTPNVSQAMRDR LKEVYNVVQEVNVLDSQDAANLALLSRPELGVTFTKLHCWRLVQFEKCVF LDADTLVLQNCDELFEREELSAAPDVSWPDCFNSGVFVFKPSVDTFAQIT EFAVKNGSFDGGDQGLLNQFFADWSTADIKKHLPFVYNVTAYASYCYLPA FKQFRDKIKILHFAGKLKPWLIQFNSETKVASVSSEYAHAQDLIQLWWNI FCENVIQSLSTEMAGLAGALSQLRIGQQRTPEQEAYENQMRRQCWESGQI DYTGADSFENIWKKISQTLERKTDKESEETGSS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12803-PA | 331 | GF12803-PA | 1..331 | 1..333 | 1661 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22100-PA | 558 | GG22100-PA | 1..263 | 1..263 | 1417 | 99.6 | Plus |
Dere\GG22100-PA | 558 | GG22100-PA | 478..558 | 253..333 | 369 | 85.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21859-PA | 200 | GH21859-PA | 1..122 | 1..116 | 519 | 83.6 | Plus |
Dgri\GH21859-PA | 200 | GH21859-PA | 103..200 | 238..333 | 371 | 70.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gyg-PB | 333 | CG44244-PB | 1..333 | 1..333 | 1744 | 100 | Plus |
Gyg-PH | 334 | CG44244-PH | 1..330 | 1..330 | 1730 | 100 | Plus |
Gyg-PG | 356 | CG44244-PG | 1..356 | 1..333 | 1710 | 93.5 | Plus |
Gyg-PI | 287 | CG44244-PI | 1..287 | 47..333 | 1516 | 100 | Plus |
Gyg-PD | 545 | CG44244-PD | 1..326 | 1..329 | 1385 | 82.6 | Plus |
Gyg-PE | 699 | CG44244-PE | 1..349 | 1..329 | 1381 | 79.4 | Plus |
Gyg-PD | 545 | CG44244-PD | 465..545 | 253..333 | 367 | 87.7 | Plus |
Gyg-PE | 699 | CG44244-PE | 488..565 | 253..330 | 353 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20361-PA | 332 | GI20361-PA | 1..332 | 1..333 | 1583 | 87.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11328-PA | 299 | GL11328-PA | 1..265 | 1..265 | 1342 | 92.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21819-PA | 334 | GA21819-PA | 1..333 | 1..333 | 1652 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15817-PA | 333 | GM15817-PA | 1..333 | 1..333 | 1770 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11576-PA | 476 | GD11576-PA | 1..106 | 1..106 | 559 | 100 | Plus |
Dsim\GD11576-PA | 476 | GD11576-PA | 107..200 | 170..263 | 522 | 100 | Plus |
Dsim\GD11576-PA | 476 | GD11576-PA | 396..476 | 253..333 | 371 | 85.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22086-PA | 286 | GJ22086-PA | 1..263 | 1..263 | 1288 | 90.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15794-PA | 334 | GK15794-PA | 1..334 | 1..333 | 1637 | 90.1 | Plus |