BDGP Sequence Production Resources |
Search the DGRC for RE02292
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 22 |
Well: | 92 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3703-RA |
Protein status: | RE02292.pep: gold |
Sequenced Size: | 2512 |
Gene | Date | Evidence |
---|---|---|
CG3703 | 2001-12-14 | Blastp of sequenced clone |
CG3703 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3703 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3703 | 2008-04-29 | Release 5.5 accounting |
CG3703 | 2008-08-15 | Release 5.9 accounting |
CG3703 | 2008-12-18 | 5.12 accounting |
2512 bp (2512 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070909
> RE02292.complete AGTGCGTCAGAAACCGTGGCCGCGCGCTCGTCGTTTTATCCACACATCCC CCTGGCACACAAACTTCTCGAAACAAACAGCGAAAGAGCAGGAGAGAGCA AGGGAGCTGGGCCAGCTGGCACAGAAAGCGGAACAAGCCATCGATTGATT TTTCTCGAGCGTAGGAAACACAAAAACAGTGGAAACAAACGACGCTGGGT AAGGCAATCCCCTGCAGCATTTCCATATGGAAATGAAAATGGCAGAGGCC CAGGAAACCAAGGACTCTTGCTCGACGATCGAAGGCCAGCTGCCAGCTGG ACCTGTTCGTGCTGAAGATGAGGAGGAAGAAGTGGAGGTCGAACAAGAGC AGCAGGAGCTGCTAAGCGAACGGTGGTCGCCGTTGGGAGCCAACTACGAT GACGCGAATAGCGCCAGTTCTGGCGTGGATTGCGAACTAGAACCAGGACT GGAAAAGTCAGAAGCGCGACGTGGAAGCACTGGCAGCGAACTGGCCCGTC TGCGAAGCATAGAGGAGGAGCAGGAGCTTCTGACAAGTTCTCTGCTGGCT TTGACCTCCCACTTTGCTCACGTCCAGCTTAGAGTCCGCCAAATCGTGGA GGCGCCAGCGGAGGAGCGGGATCAACTTTTACGCGACCTCGAGGACTTCG CCTTCCAAGGAATTCCAGACGCAGTCCAGTCCAAGGAATCCCATCCAGAT AAGCCCGCAAGCGATGGTGAAAAGGACCATGGTCCTGATAGCCAGCTCAT CCAACAACTGAAGTCCCAGCTGACTGAGCTGGAACAAATAGCCTACGAGG CTGGCGAACCTGGCATCCTGCCGCAGCACGTATTGCTCGAGAAGCAAAAG TTTATCCTGGACGAGCTGCGCGCCAAGCTCAATCTCCAGGTAGAGCAGCA CGAACTGCCGGCCCTTAGCACGGAACAACTGCGCCACCAGGTCGACAATG CCATCGGCGAGTTTGTGGGCCCTCTGAAGATGAAGGAGCAACTGGTGGCC CAACTGAAGACGCAGATAACTGACTTGGAGCGCTTCATTGCCTTCCTTCA GTGCGATGCCATTGAGGGATCCGTTGGGGATCGACTGAAGCTTCTATCCG GTGCGTACAACAGCTACGCTGCAAAGCAGACAGCACGGAGTTCACAGGCA AGTTACGTTGCCACAAACGCTCCAGCTACGACAGCTACTACCCCGCCATC CTCGGGATTGGGTGCCCATTCTTCCGGCGAGAGCTTGCACAGCAAGGCAC ATGGCTTGCTGGACAAGGCTTCGGTCCTCATGCAAATGTTCGCCAGCACG CATCTGGTGAAACCACGAACTCACGACGAATTCCAGCAAAATTCGCTGAA GAAGACGCACAAGGGCAACCACTGGGGGGATCTACGTGCCCAGCTTGAGG TGGACATCCAGGAAGTAGCTGCACTGGCCGCCACTTTGAGCTGCGACCGC GAGAAGTTGGCCAACATCAAGAGAGCTTTGCGCAAACAGCAACAACAGGC GGAGTCAACCGAATTCTCCGACACTGGCAATCCGGTTATTAACTCACAAA ACGGAGCACTGACCCTGCCGCCTCGTTGCCGGCGAGCAGTGCCAACTGGT CACGAACTGGCTCCATATGCGTCCGGGGGCGCCATATCCTCCGACTCCGA CGAAGACATTAGCTACTCCAACTTCGAGTGGGAAAAGGAGAGCAAGAGCC GGCGGACGACGCATGCACGCGGTGATTCCATTGCCACTATTGGCAGGGAA TTGACTACGGTTGTGCGGAAGAACTTTGCCCGCACATTGCAGCAGCTTAT ACAACACGGACTTCGCATACCAGCGGAATCGGCTGCCTCCAGTTTGATGG TTCCCTTCATGAGGTGCCTGCACCCTGGGCCTCCGGTAGTGCCGCCCGCC GTCGGAGGAGACTCGCAGTTCCTCGGCTTGGGCAGGGCCATGCACGCCTG GGAACTAGTACTAGCCTATTATAGGTTGAAACACGGCGAGGAGTACAACA ACACGCCTGCCAGAAAGTTGTCGCAGAGCTTCCAGCTGGACATCGTGGAC GCGCAGGCTGTGACCGCCAAGCAAAGTTTGCTCAGCGCCGTGGGCATGAT TCTGGCAATGCATCGTCCATACAAACGGAGTAACAACGCGCACTTTAAAG CCTTCGTCTGCGCCGGACTCAATTCCCATTTGCTGGTGGAGTGGCTGAAC CTGATCCTCAGCTGCCATGAACTGGTGGACACGTACTACTCAGCAGACAG CTACGTGGCCCGCACCGGATTCCGCGACTCACTGCGCTCCATCGATGCTC TTTCTCGATTTGACTTCGACCTGCCGGTGGACCTGGCCATCCGGCACTTC CGCAACATCTAAGGGCGGCTGACTTGTACATTTTTTGGCTTAGACTAGAT CACACTATTCAATGTCCAACGTATTCTCTCTCTCACTTATGTATAAACTC GTGTATATAACCTTAGATATGTCCCATAAAATCAATTGCTAATCCGAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 838365..839742 | 1378..1 | 6875 | 99.9 | Minus |
chrX | 22417052 | chrX | 837272..838067 | 2172..1377 | 3965 | 99.9 | Minus |
chrX | 22417052 | chrX | 836444..836766 | 2495..2173 | 1600 | 99.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 836443..836766 | 2173..2496 | 99 | <- | Minus |
chrX | 837272..838066 | 1378..2172 | 99 | <- | Minus |
chrX | 838366..839742 | 1..1377 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3703-RA | 1..2136 | 227..2362 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3703-RA | 1..2136 | 227..2362 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3703-RA | 1..2136 | 227..2362 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3703-RA | 1..2136 | 227..2362 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3703-RA | 1..2136 | 227..2362 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3703-RA | 1..2495 | 1..2496 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3703-RA | 1..2495 | 1..2496 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3703-RA | 2..2496 | 1..2495 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3703-RA | 1..2495 | 1..2496 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3703-RA | 2..2496 | 1..2495 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 942473..942796 | 2173..2496 | 99 | <- | Minus |
X | 943302..944096 | 1378..2172 | 100 | <- | Minus |
X | 944396..945772 | 1..1377 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 942473..942796 | 2173..2496 | 99 | <- | Minus |
X | 943302..944096 | 1378..2172 | 100 | <- | Minus |
X | 944396..945772 | 1..1377 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 942473..942796 | 2173..2496 | 99 | <- | Minus |
X | 943302..944096 | 1378..2172 | 100 | <- | Minus |
X | 944396..945772 | 1..1377 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 836506..836829 | 2173..2496 | 99 | <- | Minus |
arm_X | 837335..838129 | 1378..2172 | 100 | <- | Minus |
arm_X | 838429..839805 | 1..1377 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 950571..950894 | 2173..2496 | 99 | <- | Minus |
X | 951400..952194 | 1378..2172 | 100 | <- | Minus |
X | 952494..953870 | 1..1377 | 100 | Minus |
Translation from 226 to 2361
> RE02292.hyp MEMKMAEAQETKDSCSTIEGQLPAGPVRAEDEEEEVEVEQEQQELLSERW SPLGANYDDANSASSGVDCELEPGLEKSEARRGSTGSELARLRSIEEEQE LLTSSLLALTSHFAHVQLRVRQIVEAPAEERDQLLRDLEDFAFQGIPDAV QSKESHPDKPASDGEKDHGPDSQLIQQLKSQLTELEQIAYEAGEPGILPQ HVLLEKQKFILDELRAKLNLQVEQHELPALSTEQLRHQVDNAIGEFVGPL KMKEQLVAQLKTQITDLERFIAFLQCDAIEGSVGDRLKLLSGAYNSYAAK QTARSSQASYVATNAPATTATTPPSSGLGAHSSGESLHSKAHGLLDKASV LMQMFASTHLVKPRTHDEFQQNSLKKTHKGNHWGDLRAQLEVDIQEVAAL AATLSCDREKLANIKRALRKQQQQAESTEFSDTGNPVINSQNGALTLPPR CRRAVPTGHELAPYASGGAISSDSDEDISYSNFEWEKESKSRRTTHARGD SIATIGRELTTVVRKNFARTLQQLIQHGLRIPAESAASSLMVPFMRCLHP GPPVVPPAVGGDSQFLGLGRAMHAWELVLAYYRLKHGEEYNNTPARKLSQ SFQLDIVDAQAVTAKQSLLSAVGMILAMHRPYKRSNNAHFKAFVCAGLNS HLLVEWLNLILSCHELVDTYYSADSYVARTGFRDSLRSIDALSRFDFDLP VDLAIRHFRNI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3703-PA | 711 | CG3703-PA | 1..711 | 1..711 | 3622 | 100 | Plus |
Translation from 226 to 2361
> RE02292.pep MEMKMAEAQETKDSCSTIEGQLPAGPVRAEDEEEEVEVEQEQQELLSERW SPLGANYDDANSASSGVDCELEPGLEKSEARRGSTGSELARLRSIEEEQE LLTSSLLALTSHFAHVQLRVRQIVEAPAEERDQLLRDLEDFAFQGIPDAV QSKESHPDKPASDGEKDHGPDSQLIQQLKSQLTELEQIAYEAGEPGILPQ HVLLEKQKFILDELRAKLNLQVEQHELPALSTEQLRHQVDNAIGEFVGPL KMKEQLVAQLKTQITDLERFIAFLQCDAIEGSVGDRLKLLSGAYNSYAAK QTARSSQASYVATNAPATTATTPPSSGLGAHSSGESLHSKAHGLLDKASV LMQMFASTHLVKPRTHDEFQQNSLKKTHKGNHWGDLRAQLEVDIQEVAAL AATLSCDREKLANIKRALRKQQQQAESTEFSDTGNPVINSQNGALTLPPR CRRAVPTGHELAPYASGGAISSDSDEDISYSNFEWEKESKSRRTTHARGD SIATIGRELTTVVRKNFARTLQQLIQHGLRIPAESAASSLMVPFMRCLHP GPPVVPPAVGGDSQFLGLGRAMHAWELVLAYYRLKHGEEYNNTPARKLSQ SFQLDIVDAQAVTAKQSLLSAVGMILAMHRPYKRSNNAHFKAFVCAGLNS HLLVEWLNLILSCHELVDTYYSADSYVARTGFRDSLRSIDALSRFDFDLP VDLAIRHFRNI*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22047-PA | 733 | GF22047-PA | 68..733 | 47..711 | 2747 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12729-PA | 711 | GG12729-PA | 1..711 | 5..711 | 3240 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH12740-PA | 811 | GH12740-PA | 81..811 | 46..711 | 2345 | 67.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3703-PA | 711 | CG3703-PA | 1..711 | 1..711 | 3622 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI14998-PA | 787 | GI14998-PA | 49..787 | 4..711 | 2447 | 68.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL14418-PA | 738 | GL14418-PA | 5..738 | 1..711 | 2613 | 73.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17626-PA | 738 | GA17626-PA | 5..738 | 1..711 | 2603 | 73.4 | Plus |
Dpse\GA23014-PA | 684 | GA23014-PA | 5..102 | 1..88 | 188 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19009-PA | 460 | GM19009-PA | 1..460 | 252..711 | 2405 | 96.7 | Plus |
Dsec\GM19008-PA | 240 | GM19008-PA | 1..229 | 5..238 | 963 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16446-PA | 607 | GD16446-PA | 1..606 | 5..610 | 3111 | 96.9 | Plus |
Dsim\GD16448-PA | 88 | GD16448-PA | 1..88 | 624..711 | 464 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15356-PA | 776 | GJ15356-PA | 63..776 | 35..711 | 2397 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10170-PA | 763 | GK10170-PA | 9..763 | 2..711 | 2424 | 67.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16555-PA | 717 | GE16555-PA | 1..717 | 1..711 | 3325 | 92.6 | Plus |