Clone RE02292 Report

Search the DGRC for RE02292

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:22
Well:92
Vector:pFlc-1
Associated Gene/TranscriptCG3703-RA
Protein status:RE02292.pep: gold
Sequenced Size:2512

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3703 2001-12-14 Blastp of sequenced clone
CG3703 2002-01-01 Sim4 clustering to Release 2
CG3703 2003-01-01 Sim4 clustering to Release 3
CG3703 2008-04-29 Release 5.5 accounting
CG3703 2008-08-15 Release 5.9 accounting
CG3703 2008-12-18 5.12 accounting

Clone Sequence Records

RE02292.complete Sequence

2512 bp (2512 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070909

> RE02292.complete
AGTGCGTCAGAAACCGTGGCCGCGCGCTCGTCGTTTTATCCACACATCCC
CCTGGCACACAAACTTCTCGAAACAAACAGCGAAAGAGCAGGAGAGAGCA
AGGGAGCTGGGCCAGCTGGCACAGAAAGCGGAACAAGCCATCGATTGATT
TTTCTCGAGCGTAGGAAACACAAAAACAGTGGAAACAAACGACGCTGGGT
AAGGCAATCCCCTGCAGCATTTCCATATGGAAATGAAAATGGCAGAGGCC
CAGGAAACCAAGGACTCTTGCTCGACGATCGAAGGCCAGCTGCCAGCTGG
ACCTGTTCGTGCTGAAGATGAGGAGGAAGAAGTGGAGGTCGAACAAGAGC
AGCAGGAGCTGCTAAGCGAACGGTGGTCGCCGTTGGGAGCCAACTACGAT
GACGCGAATAGCGCCAGTTCTGGCGTGGATTGCGAACTAGAACCAGGACT
GGAAAAGTCAGAAGCGCGACGTGGAAGCACTGGCAGCGAACTGGCCCGTC
TGCGAAGCATAGAGGAGGAGCAGGAGCTTCTGACAAGTTCTCTGCTGGCT
TTGACCTCCCACTTTGCTCACGTCCAGCTTAGAGTCCGCCAAATCGTGGA
GGCGCCAGCGGAGGAGCGGGATCAACTTTTACGCGACCTCGAGGACTTCG
CCTTCCAAGGAATTCCAGACGCAGTCCAGTCCAAGGAATCCCATCCAGAT
AAGCCCGCAAGCGATGGTGAAAAGGACCATGGTCCTGATAGCCAGCTCAT
CCAACAACTGAAGTCCCAGCTGACTGAGCTGGAACAAATAGCCTACGAGG
CTGGCGAACCTGGCATCCTGCCGCAGCACGTATTGCTCGAGAAGCAAAAG
TTTATCCTGGACGAGCTGCGCGCCAAGCTCAATCTCCAGGTAGAGCAGCA
CGAACTGCCGGCCCTTAGCACGGAACAACTGCGCCACCAGGTCGACAATG
CCATCGGCGAGTTTGTGGGCCCTCTGAAGATGAAGGAGCAACTGGTGGCC
CAACTGAAGACGCAGATAACTGACTTGGAGCGCTTCATTGCCTTCCTTCA
GTGCGATGCCATTGAGGGATCCGTTGGGGATCGACTGAAGCTTCTATCCG
GTGCGTACAACAGCTACGCTGCAAAGCAGACAGCACGGAGTTCACAGGCA
AGTTACGTTGCCACAAACGCTCCAGCTACGACAGCTACTACCCCGCCATC
CTCGGGATTGGGTGCCCATTCTTCCGGCGAGAGCTTGCACAGCAAGGCAC
ATGGCTTGCTGGACAAGGCTTCGGTCCTCATGCAAATGTTCGCCAGCACG
CATCTGGTGAAACCACGAACTCACGACGAATTCCAGCAAAATTCGCTGAA
GAAGACGCACAAGGGCAACCACTGGGGGGATCTACGTGCCCAGCTTGAGG
TGGACATCCAGGAAGTAGCTGCACTGGCCGCCACTTTGAGCTGCGACCGC
GAGAAGTTGGCCAACATCAAGAGAGCTTTGCGCAAACAGCAACAACAGGC
GGAGTCAACCGAATTCTCCGACACTGGCAATCCGGTTATTAACTCACAAA
ACGGAGCACTGACCCTGCCGCCTCGTTGCCGGCGAGCAGTGCCAACTGGT
CACGAACTGGCTCCATATGCGTCCGGGGGCGCCATATCCTCCGACTCCGA
CGAAGACATTAGCTACTCCAACTTCGAGTGGGAAAAGGAGAGCAAGAGCC
GGCGGACGACGCATGCACGCGGTGATTCCATTGCCACTATTGGCAGGGAA
TTGACTACGGTTGTGCGGAAGAACTTTGCCCGCACATTGCAGCAGCTTAT
ACAACACGGACTTCGCATACCAGCGGAATCGGCTGCCTCCAGTTTGATGG
TTCCCTTCATGAGGTGCCTGCACCCTGGGCCTCCGGTAGTGCCGCCCGCC
GTCGGAGGAGACTCGCAGTTCCTCGGCTTGGGCAGGGCCATGCACGCCTG
GGAACTAGTACTAGCCTATTATAGGTTGAAACACGGCGAGGAGTACAACA
ACACGCCTGCCAGAAAGTTGTCGCAGAGCTTCCAGCTGGACATCGTGGAC
GCGCAGGCTGTGACCGCCAAGCAAAGTTTGCTCAGCGCCGTGGGCATGAT
TCTGGCAATGCATCGTCCATACAAACGGAGTAACAACGCGCACTTTAAAG
CCTTCGTCTGCGCCGGACTCAATTCCCATTTGCTGGTGGAGTGGCTGAAC
CTGATCCTCAGCTGCCATGAACTGGTGGACACGTACTACTCAGCAGACAG
CTACGTGGCCCGCACCGGATTCCGCGACTCACTGCGCTCCATCGATGCTC
TTTCTCGATTTGACTTCGACCTGCCGGTGGACCTGGCCATCCGGCACTTC
CGCAACATCTAAGGGCGGCTGACTTGTACATTTTTTGGCTTAGACTAGAT
CACACTATTCAATGTCCAACGTATTCTCTCTCTCACTTATGTATAAACTC
GTGTATATAACCTTAGATATGTCCCATAAAATCAATTGCTAATCCGAAAA
AAAAAAAAAAAA

RE02292.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3703-RA 2627 CG3703-RA 125..2619 1..2495 12475 100 Plus
mus81-RA 2173 mus81-RA 1418..1740 2495..2173 1615 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 838365..839742 1378..1 6875 99.9 Minus
chrX 22417052 chrX 837272..838067 2172..1377 3965 99.9 Minus
chrX 22417052 chrX 836444..836766 2495..2173 1600 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:25:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 944395..945772 1378..1 6890 100 Minus
X 23542271 X 943302..944097 2172..1377 3980 100 Minus
X 23542271 X 942474..942796 2495..2173 1615 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 952493..953870 1378..1 6890 100 Minus
X 23527363 X 951400..952195 2172..1377 3980 100 Minus
X 23527363 X 950572..950894 2495..2173 1615 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:20:23 has no hits.

RE02292.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:21:16 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 836443..836766 2173..2496 99 <- Minus
chrX 837272..838066 1378..2172 99 <- Minus
chrX 838366..839742 1..1377 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:46:35 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
CG3703-RA 1..2136 227..2362 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:02:24 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
CG3703-RA 1..2136 227..2362 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:13:54 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
CG3703-RA 1..2136 227..2362 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:26:52 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
CG3703-RA 1..2136 227..2362 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:28 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
CG3703-RA 1..2136 227..2362 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:29:10 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
CG3703-RA 1..2495 1..2496 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:02:24 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
CG3703-RA 1..2495 1..2496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:13:54 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
CG3703-RA 2..2496 1..2495 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:26:53 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
CG3703-RA 1..2495 1..2496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:28 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
CG3703-RA 2..2496 1..2495 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:21:16 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
X 942473..942796 2173..2496 99 <- Minus
X 943302..944096 1378..2172 100 <- Minus
X 944396..945772 1..1377 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:21:16 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
X 942473..942796 2173..2496 99 <- Minus
X 943302..944096 1378..2172 100 <- Minus
X 944396..945772 1..1377 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:21:16 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
X 942473..942796 2173..2496 99 <- Minus
X 943302..944096 1378..2172 100 <- Minus
X 944396..945772 1..1377 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:13:54 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 836506..836829 2173..2496 99 <- Minus
arm_X 837335..838129 1378..2172 100 <- Minus
arm_X 838429..839805 1..1377 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:02:45 Download gff for RE02292.complete
Subject Subject Range Query Range Percent Splice Strand
X 950571..950894 2173..2496 99 <- Minus
X 951400..952194 1378..2172 100 <- Minus
X 952494..953870 1..1377 100   Minus

RE02292.hyp Sequence

Translation from 226 to 2361

> RE02292.hyp
MEMKMAEAQETKDSCSTIEGQLPAGPVRAEDEEEEVEVEQEQQELLSERW
SPLGANYDDANSASSGVDCELEPGLEKSEARRGSTGSELARLRSIEEEQE
LLTSSLLALTSHFAHVQLRVRQIVEAPAEERDQLLRDLEDFAFQGIPDAV
QSKESHPDKPASDGEKDHGPDSQLIQQLKSQLTELEQIAYEAGEPGILPQ
HVLLEKQKFILDELRAKLNLQVEQHELPALSTEQLRHQVDNAIGEFVGPL
KMKEQLVAQLKTQITDLERFIAFLQCDAIEGSVGDRLKLLSGAYNSYAAK
QTARSSQASYVATNAPATTATTPPSSGLGAHSSGESLHSKAHGLLDKASV
LMQMFASTHLVKPRTHDEFQQNSLKKTHKGNHWGDLRAQLEVDIQEVAAL
AATLSCDREKLANIKRALRKQQQQAESTEFSDTGNPVINSQNGALTLPPR
CRRAVPTGHELAPYASGGAISSDSDEDISYSNFEWEKESKSRRTTHARGD
SIATIGRELTTVVRKNFARTLQQLIQHGLRIPAESAASSLMVPFMRCLHP
GPPVVPPAVGGDSQFLGLGRAMHAWELVLAYYRLKHGEEYNNTPARKLSQ
SFQLDIVDAQAVTAKQSLLSAVGMILAMHRPYKRSNNAHFKAFVCAGLNS
HLLVEWLNLILSCHELVDTYYSADSYVARTGFRDSLRSIDALSRFDFDLP
VDLAIRHFRNI*

RE02292.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3703-PA 711 CG3703-PA 1..711 1..711 3622 100 Plus

RE02292.pep Sequence

Translation from 226 to 2361

> RE02292.pep
MEMKMAEAQETKDSCSTIEGQLPAGPVRAEDEEEEVEVEQEQQELLSERW
SPLGANYDDANSASSGVDCELEPGLEKSEARRGSTGSELARLRSIEEEQE
LLTSSLLALTSHFAHVQLRVRQIVEAPAEERDQLLRDLEDFAFQGIPDAV
QSKESHPDKPASDGEKDHGPDSQLIQQLKSQLTELEQIAYEAGEPGILPQ
HVLLEKQKFILDELRAKLNLQVEQHELPALSTEQLRHQVDNAIGEFVGPL
KMKEQLVAQLKTQITDLERFIAFLQCDAIEGSVGDRLKLLSGAYNSYAAK
QTARSSQASYVATNAPATTATTPPSSGLGAHSSGESLHSKAHGLLDKASV
LMQMFASTHLVKPRTHDEFQQNSLKKTHKGNHWGDLRAQLEVDIQEVAAL
AATLSCDREKLANIKRALRKQQQQAESTEFSDTGNPVINSQNGALTLPPR
CRRAVPTGHELAPYASGGAISSDSDEDISYSNFEWEKESKSRRTTHARGD
SIATIGRELTTVVRKNFARTLQQLIQHGLRIPAESAASSLMVPFMRCLHP
GPPVVPPAVGGDSQFLGLGRAMHAWELVLAYYRLKHGEEYNNTPARKLSQ
SFQLDIVDAQAVTAKQSLLSAVGMILAMHRPYKRSNNAHFKAFVCAGLNS
HLLVEWLNLILSCHELVDTYYSADSYVARTGFRDSLRSIDALSRFDFDLP
VDLAIRHFRNI*

RE02292.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22047-PA 733 GF22047-PA 68..733 47..711 2747 83.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12729-PA 711 GG12729-PA 1..711 5..711 3240 93.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12740-PA 811 GH12740-PA 81..811 46..711 2345 67.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3703-PA 711 CG3703-PA 1..711 1..711 3622 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14998-PA 787 GI14998-PA 49..787 4..711 2447 68.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:21:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14418-PA 738 GL14418-PA 5..738 1..711 2613 73.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17626-PA 738 GA17626-PA 5..738 1..711 2603 73.4 Plus
Dpse\GA23014-PA 684 GA23014-PA 5..102 1..88 188 45.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19009-PA 460 GM19009-PA 1..460 252..711 2405 96.7 Plus
Dsec\GM19008-PA 240 GM19008-PA 1..229 5..238 963 91.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16446-PA 607 GD16446-PA 1..606 5..610 3111 96.9 Plus
Dsim\GD16448-PA 88 GD16448-PA 1..88 624..711 464 94.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15356-PA 776 GJ15356-PA 63..776 35..711 2397 72 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10170-PA 763 GK10170-PA 9..763 2..711 2424 67.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16555-PA 717 GE16555-PA 1..717 1..711 3325 92.6 Plus