BDGP Sequence Production Resources |
Search the DGRC for RE02339
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 23 |
Well: | 39 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpL10-RC |
Protein status: | RE02339.pep: gold |
Sequenced Size: | 767 |
Gene | Date | Evidence |
---|---|---|
CG17521 | 2001-12-14 | Blastp of sequenced clone |
CG17521 | 2002-01-01 | Sim4 clustering to Release 2 |
CG17521 | 2003-01-01 | Sim4 clustering to Release 3 |
Qm | 2008-04-29 | Release 5.5 accounting |
Qm | 2008-08-15 | Release 5.9 accounting |
Qm | 2008-12-18 | 5.12 accounting |
767 bp (767 high quality bases) assembled on 2006-06-05
GenBank Submission: AY070910
> RE02339.complete GTCTTCCTTTTCTCGTGTGCTTCGTTGGAAGAGGAGTCGAAATGGGCCGA CGACCAGCTAGATGCTACCGCTATTGCAAAAATAAGCCGTACCCTAAATC TCGGTTTTGCCGTGGTGTCCCTGATCCAAAAATTCGTATATTTGATTTGG GAAGAAAAAAAGCTACAGTTGAGGATTTTCCCCTGTGTGTTCATTTGGTT TCTGATGAATACGAACAGCTGAGTAGTGAAGCTTTGGAAGCTGGACGCAT TTGTTGCAACAAGTACTTGGTGAAGTACTGCGGTAAGGACCAGTTCCACA TCAGAATGCGCCTGCATCCATTCCACGTCATTCGCATCAACAAAATGTTG TCGTGCGCTGGAGCTGATAGGCTTCAAACTGGAATGCGAGGAGCGTTTGG AAAACCGCAGGGCACGGTTGCTCGAGTTCGTATTGGTCAACCCATTATGT CTGTCCGCTCTAGCGATCGTTACAAGGCTCAAGTTATTGAAGCTTTGCGG CGTGCTAAGTTTAAGTTCCCTGGACGTCAAAAGATCTATGTTTCAAAGAA GTGGGGATTCACCAAATACGAACGTGAGCGTTATGAAGAACTTCGCGATG ACAACCGCCTTGAGCCTGATGGTTGCAATGTGAAATACCGCCCAGAGCAT GGCCCGATTGCCGCATGGGAAAAAGCTCAGCGTGATGTTTATGCTTAATA ACACATTGAAATAAAATGTCACTTAAAGTTTCGTAACTCAGAAACAATAT ACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Qm-RC | 1127 | Qm-RC | 159..914 | 1..756 | 3780 | 100 | Plus |
Qm.e | 1120 | Qm.e | 229..953 | 32..756 | 3625 | 100 | Plus |
Qm-RD | 871 | Qm-RD | 71..794 | 33..756 | 3620 | 100 | Plus |
Qm.e | 1120 | Qm.e | 67..100 | 1..34 | 170 | 100 | Plus |
Qm-RD | 871 | Qm-RD | 28..61 | 1..34 | 170 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 23083834..23084141 | 371..64 | 1540 | 100 | Minus |
chr3L | 24539361 | chr3L | 23082589..23082809 | 752..532 | 1105 | 100 | Minus |
chr3L | 24539361 | chr3L | 23083613..23083778 | 533..368 | 830 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 23094905..23095212 | 371..64 | 1540 | 100 | Minus |
3L | 28110227 | 3L | 23093656..23093880 | 756..532 | 1125 | 100 | Minus |
3L | 28110227 | 3L | 23094684..23094849 | 533..368 | 830 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 23088005..23088312 | 371..64 | 1540 | 100 | Minus |
3L | 28103327 | 3L | 23086756..23086980 | 756..532 | 1125 | 100 | Minus |
3L | 28103327 | 3L | 23087784..23087949 | 533..368 | 830 | 100 | Minus |
3L | 28103327 | 3L | 23088536..23088569 | 34..1 | 170 | 100 | Minus |
3L | 28103327 | 3L | 23088375..23088407 | 64..32 | 165 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 23084366..23084398 | 1..33 | 100 | Minus | |
chr3L | 23083613..23083775 | 371..533 | 100 | <- | Minus |
chr3L | 23083835..23084140 | 65..370 | 100 | <- | Minus |
chr3L | 23082589..23082807 | 534..752 | 100 | <- | Minus |
chr3L | 23084204..23084234 | 34..64 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Qm-RD | 1..657 | 42..698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Qm-RD | 1..657 | 42..698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL10-RC | 1..657 | 42..698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Qm-RD | 1..657 | 42..698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL10-RC | 1..657 | 42..698 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Qm-RC | 1..752 | 1..752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Qm-RC | 1..752 | 1..752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL10-RC | 3..754 | 1..752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Qm-RC | 1..752 | 1..752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL10-RC | 3..754 | 1..752 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 23093660..23093878 | 534..752 | 100 | <- | Minus |
3L | 23094684..23094846 | 371..533 | 100 | <- | Minus |
3L | 23094906..23095211 | 65..370 | 100 | <- | Minus |
3L | 23095275..23095305 | 34..64 | 100 | <- | Minus |
3L | 23095437..23095469 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 23093660..23093878 | 534..752 | 100 | <- | Minus |
3L | 23094684..23094846 | 371..533 | 100 | <- | Minus |
3L | 23094906..23095211 | 65..370 | 100 | <- | Minus |
3L | 23095275..23095305 | 34..64 | 100 | <- | Minus |
3L | 23095437..23095469 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 23093660..23093878 | 534..752 | 100 | <- | Minus |
3L | 23094684..23094846 | 371..533 | 100 | <- | Minus |
3L | 23094906..23095211 | 65..370 | 100 | <- | Minus |
3L | 23095275..23095305 | 34..64 | 100 | <- | Minus |
3L | 23095437..23095469 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 23086760..23086978 | 534..752 | 100 | <- | Minus |
arm_3L | 23087784..23087946 | 371..533 | 100 | <- | Minus |
arm_3L | 23088006..23088311 | 65..370 | 100 | <- | Minus |
arm_3L | 23088375..23088405 | 34..64 | 100 | <- | Minus |
arm_3L | 23088537..23088569 | 1..33 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 23086760..23086978 | 534..752 | 100 | <- | Minus |
3L | 23087784..23087946 | 371..533 | 100 | <- | Minus |
3L | 23088006..23088311 | 65..370 | 100 | <- | Minus |
3L | 23088375..23088405 | 34..64 | 100 | <- | Minus |
3L | 23088537..23088569 | 1..33 | 100 | Minus |
Translation from 2 to 697
> RE02339.hyp LPFLVCFVGRGVEMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLG RKKATVEDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHI RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS VRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDD NRLEPDGCNVKYRPEHGPIAAWEKAQRDVYA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL10-PE | 218 | CG17521-PE | 1..218 | 14..231 | 1183 | 100 | Plus |
RpL10-PD | 218 | CG17521-PD | 1..218 | 14..231 | 1183 | 100 | Plus |
RpL10-PC | 218 | CG17521-PC | 1..218 | 14..231 | 1183 | 100 | Plus |
Translation from 41 to 697
> RE02339.pep MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKATVEDFPLCV HLVSDEYEQLSSEALEAGRICCNKYLVKYCGKDQFHIRMRLHPFHVIRIN KMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRYKAQVIE ALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYR PEHGPIAAWEKAQRDVYA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20520-PA | 218 | GF20520-PA | 1..218 | 1..218 | 1152 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16295-PA | 218 | GG16295-PA | 1..218 | 1..218 | 1153 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19580-PA | 218 | GH19580-PA | 1..218 | 1..218 | 1135 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL10-PE | 218 | CG17521-PE | 1..218 | 1..218 | 1183 | 100 | Plus |
RpL10-PD | 218 | CG17521-PD | 1..218 | 1..218 | 1183 | 100 | Plus |
RpL10-PC | 218 | CG17521-PC | 1..218 | 1..218 | 1183 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23790-PA | 218 | GI23790-PA | 1..218 | 1..218 | 1139 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21963-PA | 218 | GL21963-PA | 1..218 | 1..218 | 1138 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26129-PA | 218 | GA26129-PA | 1..218 | 1..218 | 1138 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22490-PA | 218 | GM22490-PA | 1..218 | 1..218 | 1154 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12046-PA | 218 | GD12046-PA | 1..218 | 1..218 | 1154 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11194-PA | 218 | GJ11194-PA | 1..218 | 1..218 | 1145 | 98.2 | Plus |
Dvir\GJ17194-PA | 219 | GJ17194-PA | 1..218 | 1..218 | 1094 | 93.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10847-PA | 218 | GK10847-PA | 1..218 | 1..218 | 1139 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19480-PA | 218 | GE19480-PA | 1..218 | 1..218 | 1154 | 99.5 | Plus |