BDGP Sequence Production Resources |
Search the DGRC for RE02644
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 26 |
Well: | 44 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1246-RB |
Protein status: | RE02644.pep: gold |
Preliminary Size: | 1391 |
Sequenced Size: | 1662 |
Gene | Date | Evidence |
---|---|---|
CG1246 | 2001-12-14 | Blastp of sequenced clone |
CG1246 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1246 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1246 | 2008-04-29 | Release 5.5 accounting |
CG1246 | 2008-08-15 | Release 5.9 accounting |
CG1246 | 2008-12-18 | 5.12 accounting |
1662 bp (1662 high quality bases) assembled on 2001-12-14
GenBank Submission: AY070918
> RE02644.complete AGTCGATGGAAGAGCTCAGTCCAAAGGAGGCAGCCGGCGAACGCGTTTTG CCTACCATATTCCACCTCCGAGAAAGCCGCGAATTCAATTCCAACGCCCC AAAGCGTGCGTTGTCTTATCGAGTAGGCAATTGGCTGGCCCAGCGATCAC AGGTTGCACAACCCATTACCCGGAATAGCAAAAATCCCGCGCCGAAGGAA TAGCACTCCATCAAGATGGCCGGCATGGGCACTGGATTTTCCAAGTGCTT TATACTCTTCATGGCAATTGTCATACTCGTCCAGGGAGTTGCCTACTTGG GCTTGTCCATCTGGGGCATCACCTTCCGAGATTGTCCGGATGGCGTTACT GATTTCAGCGAAAATCCCTTCAAGTACGCCATGGAGCTCATTTACTTTGC ACAGGAGGAATGTGGTGAGCCGGTGCTGAAGGTGGCAGACGAACAATTTA GTTTGAACATAGATTGGCAGACGTCCTATGCCATTACCAACCGGGAGTTC ATCTTCATGATAACCTACGCAGTTATTAGCGGAGTCTGGGTAGCCACTTC GGTGTTGGTAATAACCACTTTGTGCAATCGCACCACCAAGCTGATCTCCG GAGTGGTCTATTGGCCCTGGTTCCTATCCGTGCTAGCTGGCAGTATCCTA GATGTGGTGGCCACGGTGTATCATGGAATCGACATAAGTCATACAACGTC CATGAAAGATGCACTTGATTACATTGGAGTCTCATATAGCGAAATTGTTA GTAATGTCTGGACTCTAATGGAGCCCTTCGGCGTATACTTCTCGACGCCA TCGATTCTTCTACTGTGCCTCACAAGTCGCGTAGCCATCATCTGGCTGCT GAACATCATTGGAGTTACCTTCTGTCTCTCGTTGTCCGGAATCATGGCGG AGCAGAATGCGAAATCAGCCGCCTTGAGCAGGAGCCAGGCTCCCACCCGA CAGCCGACACCACAGCCTGCGGTGGCATTAGTCCAGCCGGTGGTGGAGGC CACGCTAGTGGAATCCATTCAGCCTTCGGCCCCGCAAGAGAGCCCTCAAT ATCCGGAGCAGATCCGACCCAAGCCGCTGCCCATTTTCATTCCCTCGGAG CAGGGTGCCCAGCGTCCAAACTCCCAGCAGTTCGCACCCGGAGATCGCAC CACTTTGCAATCGCCGGTGATGGTGCTACCACCACAAGTTCCTCAGCAGA GAGATGTTGTGTCCCCGCAGCCTGACATCAACACCTATCGCACCACCGAG GCTCATCCCGACCACCTCAACTATCCACCTTCGGAGCCACAAACTCCACG TGCTCCTTCGCCGGCTGTCCAACAACTGGCGGTGACGTCGCCACTAAACA ATCGCTACAGCGAGATATATCCTGCTCCCGTAAATCCCCGCGTTAGCGAA GAGCTGCGCAACCAGATGCCTTGGTCGTACACCAGCATGGTGACTAAGCC ACCACCGCCGCCACGCAAGCCACAACTTCAAGTACAGATCTACCCGCAGA TTCCGGAACCCGACTACGCGGATCACTAGTCATTATAGTAGTGCACGCTG CTCGGGCGTTGATTTGCGTTTAATCAGTCTGGATGCGCGGTTGTAAAAAG TTGTGTGTTATTGTTACCTTTATTGCATAAAGCTAAAGCTGATGGCCAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1246-RB | 1805 | CG1246-RB | 113..1759 | 3..1649 | 8235 | 100 | Plus |
CG1246.a | 1674 | CG1246.a | 122..1674 | 97..1649 | 7765 | 100 | Plus |
CG1246.a | 1674 | CG1246.a | 3..96 | 3..96 | 470 | 100 | Plus |
Aats-pro-RA | 1510 | Aats-pro-RA | 1470..1510 | 1649..1609 | 205 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 2648746..2649695 | 698..1647 | 4570 | 98.7 | Plus |
chr3L | 24539361 | chr3L | 2647902..2648086 | 96..280 | 925 | 100 | Plus |
chr3L | 24539361 | chr3L | 2648346..2648507 | 403..564 | 795 | 99.4 | Plus |
chr3L | 24539361 | chr3L | 2648562..2648695 | 565..698 | 655 | 99.3 | Plus |
chr3L | 24539361 | chr3L | 2648154..2648277 | 279..402 | 620 | 100 | Plus |
chr3L | 24539361 | chr3L | 2647542..2647635 | 3..96 | 455 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 2649256..2650207 | 698..1649 | 4760 | 100 | Plus |
3L | 28110227 | 3L | 2648412..2648596 | 96..280 | 925 | 100 | Plus |
3L | 28110227 | 3L | 2648856..2649017 | 403..564 | 810 | 100 | Plus |
3L | 28110227 | 3L | 2649072..2649205 | 565..698 | 670 | 100 | Plus |
3L | 28110227 | 3L | 2648664..2648787 | 279..402 | 620 | 100 | Plus |
3L | 28110227 | 3L | 2648052..2648145 | 3..96 | 470 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 2649256..2650207 | 698..1649 | 4760 | 100 | Plus |
3L | 28103327 | 3L | 2648412..2648596 | 96..280 | 925 | 100 | Plus |
3L | 28103327 | 3L | 2648856..2649017 | 403..564 | 810 | 100 | Plus |
3L | 28103327 | 3L | 2649072..2649205 | 565..698 | 670 | 100 | Plus |
3L | 28103327 | 3L | 2648664..2648787 | 279..402 | 620 | 100 | Plus |
3L | 28103327 | 3L | 2648052..2648145 | 3..96 | 470 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 2647903..2648084 | 97..278 | 100 | -> | Plus |
chr3L | 2648154..2648277 | 279..402 | 100 | -> | Plus |
chr3L | 2648346..2648507 | 403..564 | 99 | -> | Plus |
chr3L | 2648562..2648695 | 565..698 | 99 | -> | Plus |
chr3L | 2647540..2647635 | 1..96 | 97 | -> | Plus |
chr3L | 2648747..2649695 | 699..1647 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1246-RB | 1..1314 | 216..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1246-RC | 1..1314 | 216..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1246-RB | 1..1314 | 216..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1246-RB | 1..1314 | 216..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1246-RE | 1..1314 | 216..1529 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1246-RB | 1..1647 | 1..1647 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1246-RB | 1..1647 | 1..1647 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1246-RB | 3..1649 | 1..1647 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1246-RB | 1..1647 | 1..1647 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1246-RB | 3..1649 | 1..1647 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2648050..2648145 | 1..96 | 98 | -> | Plus |
3L | 2648413..2648594 | 97..278 | 100 | -> | Plus |
3L | 2648664..2648787 | 279..402 | 100 | -> | Plus |
3L | 2648856..2649017 | 403..564 | 100 | -> | Plus |
3L | 2649072..2649205 | 565..698 | 100 | -> | Plus |
3L | 2649257..2650205 | 699..1647 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2648050..2648145 | 1..96 | 98 | -> | Plus |
3L | 2648413..2648594 | 97..278 | 100 | -> | Plus |
3L | 2648664..2648787 | 279..402 | 100 | -> | Plus |
3L | 2648856..2649017 | 403..564 | 100 | -> | Plus |
3L | 2649072..2649205 | 565..698 | 100 | -> | Plus |
3L | 2649257..2650205 | 699..1647 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2648050..2648145 | 1..96 | 98 | -> | Plus |
3L | 2648413..2648594 | 97..278 | 100 | -> | Plus |
3L | 2648664..2648787 | 279..402 | 100 | -> | Plus |
3L | 2648856..2649017 | 403..564 | 100 | -> | Plus |
3L | 2649072..2649205 | 565..698 | 100 | -> | Plus |
3L | 2649257..2650205 | 699..1647 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 2648856..2649017 | 403..564 | 100 | -> | Plus |
arm_3L | 2649072..2649205 | 565..698 | 100 | -> | Plus |
arm_3L | 2648050..2648145 | 1..96 | 98 | -> | Plus |
arm_3L | 2648413..2648594 | 97..278 | 100 | -> | Plus |
arm_3L | 2648664..2648787 | 279..402 | 100 | -> | Plus |
arm_3L | 2649257..2650205 | 699..1647 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 2649257..2650205 | 699..1647 | 100 | Plus | |
3L | 2648050..2648145 | 1..96 | 98 | -> | Plus |
3L | 2648413..2648594 | 97..278 | 100 | -> | Plus |
3L | 2648664..2648787 | 279..402 | 100 | -> | Plus |
3L | 2648856..2649017 | 403..564 | 100 | -> | Plus |
3L | 2649072..2649205 | 565..698 | 100 | -> | Plus |
Translation from 215 to 1528
> RE02644.pep MAGMGTGFSKCFILFMAIVILVQGVAYLGLSIWGITFRDCPDGVTDFSEN PFKYAMELIYFAQEECGEPVLKVADEQFSLNIDWQTSYAITNREFIFMIT YAVISGVWVATSVLVITTLCNRTTKLISGVVYWPWFLSVLAGSILDVVAT VYHGIDISHTTSMKDALDYIGVSYSEIVSNVWTLMEPFGVYFSTPSILLL CLTSRVAIIWLLNIIGVTFCLSLSGIMAEQNAKSAALSRSQAPTRQPTPQ PAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIPSEQGAQR PNSQQFAPGDRTTLQSPVMVLPPQVPQQRDVVSPQPDINTYRTTEAHPDH LNYPPSEPQTPRAPSPAVQQLAVTSPLNNRYSEIYPAPVNPRVSEELRNQ MPWSYTSMVTKPPPPPRKPQLQVQIYPQIPEPDYADH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24243-PA | 436 | GF24243-PA | 3..434 | 5..437 | 1689 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14880-PA | 437 | GG14880-PA | 1..437 | 1..437 | 2067 | 90.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16398-PA | 440 | GH16398-PA | 1..440 | 1..437 | 1271 | 59.7 | Plus |
Dgri\GH22441-PA | 251 | GH22441-PA | 87..251 | 278..437 | 409 | 67.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1246-PD | 437 | CG1246-PD | 1..437 | 1..437 | 2295 | 100 | Plus |
CG1246-PC | 437 | CG1246-PC | 1..437 | 1..437 | 2295 | 100 | Plus |
CG1246-PE | 437 | CG1246-PE | 1..437 | 1..437 | 2295 | 100 | Plus |
CG1246-PB | 437 | CG1246-PB | 1..437 | 1..437 | 2295 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12480-PA | 442 | GI12480-PA | 1..442 | 1..437 | 1185 | 58.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22465-PA | 254 | GL22465-PA | 64..254 | 259..437 | 615 | 76.6 | Plus |
Dper\GL22465-PA | 254 | GL22465-PA | 1..62 | 1..63 | 273 | 74.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11646-PA | 520 | GA11646-PA | 71..520 | 1..437 | 1613 | 70.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14504-PA | 436 | GM14504-PA | 1..436 | 1..437 | 2239 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13701-PA | 437 | GD13701-PA | 1..437 | 1..437 | 2252 | 97.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12384-PA | 447 | GJ12384-PA | 1..447 | 1..437 | 1268 | 58.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12662-PA | 426 | GK12662-PA | 1..426 | 1..437 | 1333 | 63.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20332-PA | 434 | GE20332-PA | 1..434 | 1..437 | 2036 | 90.4 | Plus |
Translation from 215 to 1528
> RE02644.hyp MAGMGTGFSKCFILFMAIVILVQGVAYLGLSIWGITFRDCPDGVTDFSEN PFKYAMELIYFAQEECGEPVLKVADEQFSLNIDWQTSYAITNREFIFMIT YAVISGVWVATSVLVITTLCNRTTKLISGVVYWPWFLSVLAGSILDVVAT VYHGIDISHTTSMKDALDYIGVSYSEIVSNVWTLMEPFGVYFSTPSILLL CLTSRVAIIWLLNIIGVTFCLSLSGIMAEQNAKSAALSRSQAPTRQPTPQ PAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIPSEQGAQR PNSQQFAPGDRTTLQSPVMVLPPQVPQQRDVVSPQPDINTYRTTEAHPDH LNYPPSEPQTPRAPSPAVQQLAVTSPLNNRYSEIYPAPVNPRVSEELRNQ MPWSYTSMVTKPPPPPRKPQLQVQIYPQIPEPDYADH*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1246-PD | 437 | CG1246-PD | 1..437 | 1..437 | 2295 | 100 | Plus |
CG1246-PC | 437 | CG1246-PC | 1..437 | 1..437 | 2295 | 100 | Plus |
CG1246-PE | 437 | CG1246-PE | 1..437 | 1..437 | 2295 | 100 | Plus |
CG1246-PB | 437 | CG1246-PB | 1..437 | 1..437 | 2295 | 100 | Plus |