Clone RE02644 Report

Search the DGRC for RE02644

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:26
Well:44
Vector:pFlc-1
Associated Gene/TranscriptCG1246-RB
Protein status:RE02644.pep: gold
Preliminary Size:1391
Sequenced Size:1662

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1246 2001-12-14 Blastp of sequenced clone
CG1246 2002-01-01 Sim4 clustering to Release 2
CG1246 2003-01-01 Sim4 clustering to Release 3
CG1246 2008-04-29 Release 5.5 accounting
CG1246 2008-08-15 Release 5.9 accounting
CG1246 2008-12-18 5.12 accounting

Clone Sequence Records

RE02644.complete Sequence

1662 bp (1662 high quality bases) assembled on 2001-12-14

GenBank Submission: AY070918

> RE02644.complete
AGTCGATGGAAGAGCTCAGTCCAAAGGAGGCAGCCGGCGAACGCGTTTTG
CCTACCATATTCCACCTCCGAGAAAGCCGCGAATTCAATTCCAACGCCCC
AAAGCGTGCGTTGTCTTATCGAGTAGGCAATTGGCTGGCCCAGCGATCAC
AGGTTGCACAACCCATTACCCGGAATAGCAAAAATCCCGCGCCGAAGGAA
TAGCACTCCATCAAGATGGCCGGCATGGGCACTGGATTTTCCAAGTGCTT
TATACTCTTCATGGCAATTGTCATACTCGTCCAGGGAGTTGCCTACTTGG
GCTTGTCCATCTGGGGCATCACCTTCCGAGATTGTCCGGATGGCGTTACT
GATTTCAGCGAAAATCCCTTCAAGTACGCCATGGAGCTCATTTACTTTGC
ACAGGAGGAATGTGGTGAGCCGGTGCTGAAGGTGGCAGACGAACAATTTA
GTTTGAACATAGATTGGCAGACGTCCTATGCCATTACCAACCGGGAGTTC
ATCTTCATGATAACCTACGCAGTTATTAGCGGAGTCTGGGTAGCCACTTC
GGTGTTGGTAATAACCACTTTGTGCAATCGCACCACCAAGCTGATCTCCG
GAGTGGTCTATTGGCCCTGGTTCCTATCCGTGCTAGCTGGCAGTATCCTA
GATGTGGTGGCCACGGTGTATCATGGAATCGACATAAGTCATACAACGTC
CATGAAAGATGCACTTGATTACATTGGAGTCTCATATAGCGAAATTGTTA
GTAATGTCTGGACTCTAATGGAGCCCTTCGGCGTATACTTCTCGACGCCA
TCGATTCTTCTACTGTGCCTCACAAGTCGCGTAGCCATCATCTGGCTGCT
GAACATCATTGGAGTTACCTTCTGTCTCTCGTTGTCCGGAATCATGGCGG
AGCAGAATGCGAAATCAGCCGCCTTGAGCAGGAGCCAGGCTCCCACCCGA
CAGCCGACACCACAGCCTGCGGTGGCATTAGTCCAGCCGGTGGTGGAGGC
CACGCTAGTGGAATCCATTCAGCCTTCGGCCCCGCAAGAGAGCCCTCAAT
ATCCGGAGCAGATCCGACCCAAGCCGCTGCCCATTTTCATTCCCTCGGAG
CAGGGTGCCCAGCGTCCAAACTCCCAGCAGTTCGCACCCGGAGATCGCAC
CACTTTGCAATCGCCGGTGATGGTGCTACCACCACAAGTTCCTCAGCAGA
GAGATGTTGTGTCCCCGCAGCCTGACATCAACACCTATCGCACCACCGAG
GCTCATCCCGACCACCTCAACTATCCACCTTCGGAGCCACAAACTCCACG
TGCTCCTTCGCCGGCTGTCCAACAACTGGCGGTGACGTCGCCACTAAACA
ATCGCTACAGCGAGATATATCCTGCTCCCGTAAATCCCCGCGTTAGCGAA
GAGCTGCGCAACCAGATGCCTTGGTCGTACACCAGCATGGTGACTAAGCC
ACCACCGCCGCCACGCAAGCCACAACTTCAAGTACAGATCTACCCGCAGA
TTCCGGAACCCGACTACGCGGATCACTAGTCATTATAGTAGTGCACGCTG
CTCGGGCGTTGATTTGCGTTTAATCAGTCTGGATGCGCGGTTGTAAAAAG
TTGTGTGTTATTGTTACCTTTATTGCATAAAGCTAAAGCTGATGGCCAAA
AAAAAAAAAAAA

RE02644.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1246-RB 1805 CG1246-RB 113..1759 3..1649 8235 100 Plus
CG1246.a 1674 CG1246.a 122..1674 97..1649 7765 100 Plus
CG1246.a 1674 CG1246.a 3..96 3..96 470 100 Plus
Aats-pro-RA 1510 Aats-pro-RA 1470..1510 1649..1609 205 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:00:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2648746..2649695 698..1647 4570 98.7 Plus
chr3L 24539361 chr3L 2647902..2648086 96..280 925 100 Plus
chr3L 24539361 chr3L 2648346..2648507 403..564 795 99.4 Plus
chr3L 24539361 chr3L 2648562..2648695 565..698 655 99.3 Plus
chr3L 24539361 chr3L 2648154..2648277 279..402 620 100 Plus
chr3L 24539361 chr3L 2647542..2647635 3..96 455 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:26:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2649256..2650207 698..1649 4760 100 Plus
3L 28110227 3L 2648412..2648596 96..280 925 100 Plus
3L 28110227 3L 2648856..2649017 403..564 810 100 Plus
3L 28110227 3L 2649072..2649205 565..698 670 100 Plus
3L 28110227 3L 2648664..2648787 279..402 620 100 Plus
3L 28110227 3L 2648052..2648145 3..96 470 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2649256..2650207 698..1649 4760 100 Plus
3L 28103327 3L 2648412..2648596 96..280 925 100 Plus
3L 28103327 3L 2648856..2649017 403..564 810 100 Plus
3L 28103327 3L 2649072..2649205 565..698 670 100 Plus
3L 28103327 3L 2648664..2648787 279..402 620 100 Plus
3L 28103327 3L 2648052..2648145 3..96 470 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:00:09 has no hits.

RE02644.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:00:55 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2647903..2648084 97..278 100 -> Plus
chr3L 2648154..2648277 279..402 100 -> Plus
chr3L 2648346..2648507 403..564 99 -> Plus
chr3L 2648562..2648695 565..698 99 -> Plus
chr3L 2647540..2647635 1..96 97 -> Plus
chr3L 2648747..2649695 699..1647 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 19:46:53 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 1..1314 216..1529 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:02:39 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RC 1..1314 216..1529 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:17:29 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 1..1314 216..1529 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:27:07 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 1..1314 216..1529 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:31 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RE 1..1314 216..1529 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:29:29 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 1..1647 1..1647 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:02:38 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 1..1647 1..1647 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:17:29 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 3..1649 1..1647 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:27:08 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 1..1647 1..1647 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:31 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
CG1246-RB 3..1649 1..1647 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:55 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2648050..2648145 1..96 98 -> Plus
3L 2648413..2648594 97..278 100 -> Plus
3L 2648664..2648787 279..402 100 -> Plus
3L 2648856..2649017 403..564 100 -> Plus
3L 2649072..2649205 565..698 100 -> Plus
3L 2649257..2650205 699..1647 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:55 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2648050..2648145 1..96 98 -> Plus
3L 2648413..2648594 97..278 100 -> Plus
3L 2648664..2648787 279..402 100 -> Plus
3L 2648856..2649017 403..564 100 -> Plus
3L 2649072..2649205 565..698 100 -> Plus
3L 2649257..2650205 699..1647 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:00:55 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2648050..2648145 1..96 98 -> Plus
3L 2648413..2648594 97..278 100 -> Plus
3L 2648664..2648787 279..402 100 -> Plus
3L 2648856..2649017 403..564 100 -> Plus
3L 2649072..2649205 565..698 100 -> Plus
3L 2649257..2650205 699..1647 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:17:29 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2648856..2649017 403..564 100 -> Plus
arm_3L 2649072..2649205 565..698 100 -> Plus
arm_3L 2648050..2648145 1..96 98 -> Plus
arm_3L 2648413..2648594 97..278 100 -> Plus
arm_3L 2648664..2648787 279..402 100 -> Plus
arm_3L 2649257..2650205 699..1647 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:03:01 Download gff for RE02644.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2649257..2650205 699..1647 100   Plus
3L 2648050..2648145 1..96 98 -> Plus
3L 2648413..2648594 97..278 100 -> Plus
3L 2648664..2648787 279..402 100 -> Plus
3L 2648856..2649017 403..564 100 -> Plus
3L 2649072..2649205 565..698 100 -> Plus

RE02644.pep Sequence

Translation from 215 to 1528

> RE02644.pep
MAGMGTGFSKCFILFMAIVILVQGVAYLGLSIWGITFRDCPDGVTDFSEN
PFKYAMELIYFAQEECGEPVLKVADEQFSLNIDWQTSYAITNREFIFMIT
YAVISGVWVATSVLVITTLCNRTTKLISGVVYWPWFLSVLAGSILDVVAT
VYHGIDISHTTSMKDALDYIGVSYSEIVSNVWTLMEPFGVYFSTPSILLL
CLTSRVAIIWLLNIIGVTFCLSLSGIMAEQNAKSAALSRSQAPTRQPTPQ
PAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIPSEQGAQR
PNSQQFAPGDRTTLQSPVMVLPPQVPQQRDVVSPQPDINTYRTTEAHPDH
LNYPPSEPQTPRAPSPAVQQLAVTSPLNNRYSEIYPAPVNPRVSEELRNQ
MPWSYTSMVTKPPPPPRKPQLQVQIYPQIPEPDYADH*

RE02644.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24243-PA 436 GF24243-PA 3..434 5..437 1689 76.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14880-PA 437 GG14880-PA 1..437 1..437 2067 90.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16398-PA 440 GH16398-PA 1..440 1..437 1271 59.7 Plus
Dgri\GH22441-PA 251 GH22441-PA 87..251 278..437 409 67.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1246-PD 437 CG1246-PD 1..437 1..437 2295 100 Plus
CG1246-PC 437 CG1246-PC 1..437 1..437 2295 100 Plus
CG1246-PE 437 CG1246-PE 1..437 1..437 2295 100 Plus
CG1246-PB 437 CG1246-PB 1..437 1..437 2295 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12480-PA 442 GI12480-PA 1..442 1..437 1185 58.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22465-PA 254 GL22465-PA 64..254 259..437 615 76.6 Plus
Dper\GL22465-PA 254 GL22465-PA 1..62 1..63 273 74.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:21:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11646-PA 520 GA11646-PA 71..520 1..437 1613 70.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14504-PA 436 GM14504-PA 1..436 1..437 2239 97.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13701-PA 437 GD13701-PA 1..437 1..437 2252 97.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12384-PA 447 GJ12384-PA 1..447 1..437 1268 58.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12662-PA 426 GK12662-PA 1..426 1..437 1333 63.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20332-PA 434 GE20332-PA 1..434 1..437 2036 90.4 Plus

RE02644.hyp Sequence

Translation from 215 to 1528

> RE02644.hyp
MAGMGTGFSKCFILFMAIVILVQGVAYLGLSIWGITFRDCPDGVTDFSEN
PFKYAMELIYFAQEECGEPVLKVADEQFSLNIDWQTSYAITNREFIFMIT
YAVISGVWVATSVLVITTLCNRTTKLISGVVYWPWFLSVLAGSILDVVAT
VYHGIDISHTTSMKDALDYIGVSYSEIVSNVWTLMEPFGVYFSTPSILLL
CLTSRVAIIWLLNIIGVTFCLSLSGIMAEQNAKSAALSRSQAPTRQPTPQ
PAVALVQPVVEATLVESIQPSAPQESPQYPEQIRPKPLPIFIPSEQGAQR
PNSQQFAPGDRTTLQSPVMVLPPQVPQQRDVVSPQPDINTYRTTEAHPDH
LNYPPSEPQTPRAPSPAVQQLAVTSPLNNRYSEIYPAPVNPRVSEELRNQ
MPWSYTSMVTKPPPPPRKPQLQVQIYPQIPEPDYADH*

RE02644.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:57:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1246-PD 437 CG1246-PD 1..437 1..437 2295 100 Plus
CG1246-PC 437 CG1246-PC 1..437 1..437 2295 100 Plus
CG1246-PE 437 CG1246-PE 1..437 1..437 2295 100 Plus
CG1246-PB 437 CG1246-PB 1..437 1..437 2295 100 Plus