BDGP Sequence Production Resources |
Search the DGRC for RE02778
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 27 |
Well: | 78 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3209-RC |
Protein status: | RE02778.pep: gold |
Sequenced Size: | 1695 |
Gene | Date | Evidence |
---|---|---|
CG3209-RA | 2009-01-26 | Manual selection by Sue Celniker |
1695 bp assembled on 2009-03-10
GenBank Submission: BT072873.1
> RE02778.complete ATTGCATATATTGGCACGACACAATTCGGAGGCATTTTTCGCTTAACAAT AACTAATGTCGCATGACACAAATGTAAAATGATCGCCGTGCTGTTGGACA TATTCTGGATCCCCATCGGGGGCTTCCTCTCATTTCTCATATTTATTTCC GCCATAAACAAATCAATCGGCGTCCGAAAAGCGTACGTGAACCTCCTCCT AAGGATATTCGAGTATGGTCGAGTTAGTATAGAGACAGCATCCAAAGAAA ACCAACACATTCAAAATCCCAAGACTGACGACAAACAGGGAGTGCAACTA GTGGACGACGCCGATTCCAAAGAAGGCACCAATGGAGCCACATTGATTAC CAGGGACGCGGTACTCCTGCCCCAGCCACAGGAGCCCGCTCCAGAGAAGC CAGTTTCCTCCACAAAGGATGAAATCAATTTCGATTTTGAGAAATGCCTG GACTACGTAAAGTCTGGCGTGGAGGCCATCATCGAGGACGATGTTACGTC GCGCTTCGAGGCGGAGGAGCTCAAGAGCTGGAACATGCTGACACGCACCA ATAGGCACTACGAGTTCATTTCCTGGAAAATCACCTCCATCTGGGTGTTC GGCTTCTTCATCCGCTACGTCATCCTGATGCCCCTCCGGGTATTGGTATG CTTCGTTGGTGTTTTATTTGCAGTTTTATCAAGCTCCATTGTGGCTTGTT TACCTTTTCGATTTGTACGGCTTTCTCTAGCGAGCTTGTCATTCAAAATT ACGTTCCGCCTTATTTCAAGTTCTATGTCCTCCTTTATCAAGTTCCACAA TAAGCAATATAAGCCCACAGTCTCTGGGTTCTGTGTAGCCAACCACACCT CTCCCTTGGATGTGGCTATATTATCGACCGATTGTACCTACTCTTTGATT GGCCAACGCCATGGCGGCTTTTTGGGGGTGCTGCAACGAGCTCTGGCCCG CGCATCTCCCCACATTTGGTTTGAGCGCGGCGAGGCCAAGGATCGTCATT TGGTGGCCGAGCGACTGAAGCAGCACGTGTCTGATCCGAACAACCCACCG ATCCTTATCTTCCCGGAGGGAACTTGCATCAACAACACGTCGGTCATGCA GTTCAAGAAGGGCAGCTTCGAAGTTGGCGGCGTCATCTACCCGGTGGCCA TTAAGTACGATCCGAGGTTCGGCGACGCCTTCTGGAACAGCGCGAAGTAC TCGATGATGCAGTATCTGTACATGATGATGACCTCGTGGGCCATCGTGTG CGATGTGTGGTACCTGCCGCCGATGTACAGGCAGGAGGGAGAGTCGGCGA TCGACTTCGCGAACCGCGTGAAGAGTGTCATCGCGAAGCAGGGAGGTTTG ATTGATCTGGTCTGGGACGGGCAGCTGAAGCGCATGAAGCCAAAGAAGGA GTGGAGGGAGATCCAGCAAGTCGAGTTTGCCAATCGGCTGAAGTCGGACT CCACCTAAATTACCATATTACCATACAGTGACTGTAAATGATATACATAC ATGATTTTGCATAATTTGTATTGCAGCGACTGTAATTTGTATAAATTACG ATTAACAATTGGATGGTTAAATAAAAGATGAAGTCAAATGTACAATTATA ATAATTATTTGTATATTAATTAATTTATCTACTTTGTAAAATAAACGATA TCTGATAAGCTGATTATCATAACATCTAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3209-RC | 2089 | CG3209-RC | 366..2042 | 1..1677 | 8370 | 99.9 | Plus |
CG3209.g | 2848 | CG3209.g | 366..2042 | 1..1677 | 8370 | 99.9 | Plus |
CG3209.a | 2125 | CG3209.a | 213..1109 | 1..897 | 4470 | 99.8 | Plus |
CG3209.a | 2125 | CG3209.a | 1332..2123 | 886..1677 | 3930 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 19959033..19959555 | 1155..1677 | 2615 | 100 | Plus |
chr2R | 21145070 | chr2R | 19958709..19958968 | 897..1156 | 1240 | 98.5 | Plus |
chr2R | 21145070 | chr2R | 19956014..19956260 | 416..662 | 1235 | 100 | Plus |
chr2R | 21145070 | chr2R | 19956773..19957009 | 661..897 | 1185 | 100 | Plus |
chr2R | 21145070 | chr2R | 19955138..19955350 | 1..213 | 1035 | 99.1 | Plus |
chr2R | 21145070 | chr2R | 19955753..19955959 | 212..418 | 1020 | 99.5 | Plus |
chrX | 22417052 | chrX | 20690472..20690615 | 1048..1191 | 240 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 24073028..24073550 | 1155..1677 | 2615 | 100 | Plus |
2R | 25286936 | 2R | 24072704..24072963 | 897..1156 | 1300 | 100 | Plus |
2R | 25286936 | 2R | 24069998..24070244 | 416..662 | 1235 | 100 | Plus |
2R | 25286936 | 2R | 24070768..24071004 | 661..897 | 1185 | 100 | Plus |
2R | 25286936 | 2R | 24069122..24069334 | 1..213 | 1050 | 99.5 | Plus |
2R | 25286936 | 2R | 24069737..24069943 | 212..418 | 1035 | 100 | Plus |
X | 23542271 | X | 20825153..20825296 | 1048..1191 | 240 | 77.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 24074227..24074749 | 1155..1677 | 2615 | 100 | Plus |
2R | 25260384 | 2R | 24073903..24074162 | 897..1156 | 1300 | 100 | Plus |
2R | 25260384 | 2R | 24071197..24071443 | 416..662 | 1235 | 100 | Plus |
2R | 25260384 | 2R | 24071967..24072203 | 661..897 | 1185 | 100 | Plus |
2R | 25260384 | 2R | 24070321..24070533 | 1..213 | 1050 | 99.5 | Plus |
2R | 25260384 | 2R | 24070936..24071142 | 212..418 | 1035 | 100 | Plus |
X | 23527363 | X | 20810245..20810388 | 1048..1191 | 240 | 77.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
412 | 7567 | 412 412 7567bp | 1672..1839 | 1470..1650 | 145 | 60.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 19955138..19955350 | 1..213 | 99 | -> | Plus |
chr2R | 19955755..19955958 | 214..417 | 99 | -> | Plus |
chr2R | 19956016..19956258 | 418..660 | 100 | -> | Plus |
chr2R | 19956773..19957009 | 661..897 | 100 | -> | Plus |
chr2R | 19958710..19958966 | 898..1154 | 98 | -> | Plus |
chr2R | 19959033..19959556 | 1155..1679 | 93 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3209-RA | 1..814 | 79..892 | 100 | <- | Plus |
CG3209-RA | 1048..1614 | 893..1458 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3209-RC | 1..1380 | 79..1458 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3209-RC | 1..1380 | 79..1458 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3209-RC | 1..1380 | 79..1458 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3209-RA | 213..1104 | 1..892 | 99 | <- | Plus |
CG3209-RA | 1338..2047 | 893..1601 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3209-RC | 213..1890 | 1..1679 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3209-RC | 73..1750 | 1..1679 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3209-RC | 73..1750 | 1..1679 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24069122..24069334 | 1..213 | 99 | -> | Plus |
2R | 24069739..24069942 | 214..417 | 100 | -> | Plus |
2R | 24070000..24070242 | 418..660 | 100 | -> | Plus |
2R | 24070768..24071004 | 661..897 | 100 | -> | Plus |
2R | 24072705..24072961 | 898..1154 | 100 | -> | Plus |
2R | 24073028..24073551 | 1155..1679 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24069122..24069334 | 1..213 | 99 | -> | Plus |
2R | 24069739..24069942 | 214..417 | 100 | -> | Plus |
2R | 24070000..24070242 | 418..660 | 100 | -> | Plus |
2R | 24070768..24071004 | 661..897 | 100 | -> | Plus |
2R | 24072705..24072961 | 898..1154 | 100 | -> | Plus |
2R | 24073028..24073551 | 1155..1679 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24069122..24069334 | 1..213 | 99 | -> | Plus |
2R | 24069739..24069942 | 214..417 | 100 | -> | Plus |
2R | 24070000..24070242 | 418..660 | 100 | -> | Plus |
2R | 24070768..24071004 | 661..897 | 100 | -> | Plus |
2R | 24072705..24072961 | 898..1154 | 100 | -> | Plus |
2R | 24073028..24073551 | 1155..1679 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 19956645..19956857 | 1..213 | 99 | -> | Plus |
arm_2R | 19957262..19957465 | 214..417 | 100 | -> | Plus |
arm_2R | 19957523..19957765 | 418..660 | 100 | -> | Plus |
arm_2R | 19958291..19958527 | 661..897 | 100 | -> | Plus |
arm_2R | 19960228..19960484 | 898..1154 | 100 | -> | Plus |
arm_2R | 19960551..19961074 | 1155..1679 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24073922..24074178 | 898..1154 | 100 | -> | Plus |
2R | 24070339..24070551 | 1..213 | 99 | -> | Plus |
2R | 24070956..24071159 | 214..417 | 100 | -> | Plus |
2R | 24071217..24071459 | 418..660 | 100 | -> | Plus |
2R | 24071985..24072221 | 661..897 | 100 | -> | Plus |
2R | 24074245..24074768 | 1155..1679 | 99 | Plus |
Translation from 78 to 1457
> RE02778.pep MIAVLLDIFWIPIGGFLSFLIFISAINKSIGVRKAYVNLLLRIFEYGRVS IETASKENQHIQNPKTDDKQGVQLVDDADSKEGTNGATLITRDAVLLPQP QEPAPEKPVSSTKDEINFDFEKCLDYVKSGVEAIIEDDVTSRFEAEELKS WNMLTRTNRHYEFISWKITSIWVFGFFIRYVILMPLRVLVCFVGVLFAVL SSSIVACLPFRFVRLSLASLSFKITFRLISSSMSSFIKFHNKQYKPTVSG FCVANHTSPLDVAILSTDCTYSLIGQRHGGFLGVLQRALARASPHIWFER GEAKDRHLVAERLKQHVSDPNNPPILIFPEGTCINNTSVMQFKKGSFEVG GVIYPVAIKYDPRFGDAFWNSAKYSMMQYLYMMMTSWAIVCDVWYLPPMY RQEGESAIDFANRVKSVIAKQGGLIDLVWDGQLKRMKPKKEWREIQQVEF ANRLKSDST*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11367-PA | 539 | GF11367-PA | 1..276 | 1..274 | 1265 | 88 | Plus |
Dana\GF11367-PA | 539 | GF11367-PA | 303..539 | 222..459 | 1175 | 88.7 | Plus |
Dana\GF21703-PA | 440 | GF21703-PA | 108..440 | 113..443 | 889 | 46.7 | Plus |
Dana\GF22630-PA | 558 | GF22630-PA | 178..351 | 253..424 | 196 | 29 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22933-PA | 537 | GG22933-PA | 1..274 | 1..274 | 1406 | 97.4 | Plus |
Dere\GG22933-PA | 537 | GG22933-PA | 303..537 | 224..459 | 1173 | 89.8 | Plus |
Dere\GG19698-PA | 439 | GG19698-PA | 107..439 | 113..443 | 869 | 45.8 | Plus |
Dere\GG18969-PA | 474 | GG18969-PA | 64..331 | 169..424 | 206 | 25.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21717-PA | 537 | GH21717-PA | 1..537 | 1..457 | 1777 | 65.3 | Plus |
Dgri\GH17744-PA | 405 | GH17744-PA | 59..405 | 99..443 | 870 | 45.4 | Plus |
Dgri\GH12406-PA | 556 | GH12406-PA | 84..345 | 171..420 | 220 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gpat4-PC | 459 | CG3209-PC | 1..459 | 1..459 | 2393 | 100 | Plus |
Gpat4-PB | 458 | CG3209-PB | 1..458 | 1..459 | 2133 | 89.3 | Plus |
Gpat4-PD | 537 | CG3209-PD | 1..274 | 1..274 | 1398 | 99.6 | Plus |
Gpat4-PD | 537 | CG3209-PD | 305..537 | 226..459 | 1134 | 90.6 | Plus |
Gpat4-PE | 380 | CG3209-PE | 1..195 | 1..195 | 1004 | 99.5 | Plus |
Gpat4-PE | 380 | CG3209-PE | 195..380 | 274..459 | 998 | 100 | Plus |
CG15450-PA | 407 | CG15450-PA | 75..407 | 113..443 | 848 | 45.8 | Plus |
LPCAT-PB | 533 | CG32699-PB | 63..328 | 171..424 | 199 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18864-PA | 538 | GI18864-PA | 1..538 | 1..457 | 1772 | 65.3 | Plus |
Dmoj\GI15857-PA | 554 | GI15857-PA | 84..344 | 171..419 | 214 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11661-PA | 531 | GL11661-PA | 267..531 | 192..457 | 1159 | 79.3 | Plus |
Dper\GL11661-PA | 531 | GL11661-PA | 1..270 | 1..274 | 1133 | 80.3 | Plus |
Dper\GL15809-PA | 417 | GL15809-PA | 82..417 | 109..442 | 894 | 46 | Plus |
Dper\GL13112-PA | 512 | GL13112-PA | 75..342 | 169..424 | 226 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA16670-PA | 531 | GA16670-PA | 267..531 | 192..457 | 1159 | 79.3 | Plus |
Dpse\GA16670-PA | 531 | GA16670-PA | 1..270 | 1..274 | 1133 | 80.3 | Plus |
Dpse\GA13739-PA | 417 | GA13739-PA | 82..417 | 109..442 | 887 | 46.3 | Plus |
Dpse\GA23062-PA | 512 | GA23062-PA | 75..342 | 169..424 | 226 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18300-PA | 537 | GM18300-PA | 1..274 | 1..274 | 1405 | 97.4 | Plus |
Dsec\GM18300-PA | 537 | GM18300-PA | 303..537 | 224..459 | 1171 | 89.4 | Plus |
Dsec\GM23052-PA | 281 | GM23052-PA | 161..281 | 323..443 | 437 | 58.7 | Plus |
Dsec\GM11357-PA | 452 | GM11357-PA | 61..328 | 169..424 | 209 | 25.3 | Plus |
Dsec\GM23052-PA | 281 | GM23052-PA | 75..158 | 113..193 | 169 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11832-PA | 537 | GD11832-PA | 1..274 | 1..274 | 1414 | 98.2 | Plus |
Dsim\GD11832-PA | 537 | GD11832-PA | 303..537 | 224..459 | 1172 | 89.8 | Plus |
Dsim\GD24693-PA | 435 | GD24693-PA | 103..435 | 113..443 | 871 | 45.5 | Plus |
Dsim\GD16057-PA | 361 | GD16057-PA | 64..237 | 253..424 | 192 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20434-PA | 537 | GJ20434-PA | 307..537 | 226..457 | 1141 | 87.5 | Plus |
Dvir\GJ20434-PA | 537 | GJ20434-PA | 1..276 | 1..274 | 996 | 71.7 | Plus |
Dvir\GJ19255-PA | 425 | GJ19255-PA | 92..425 | 112..443 | 829 | 47.6 | Plus |
Dvir\GJ19019-PA | 439 | GJ19019-PA | 39..306 | 169..424 | 205 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21924-PA | 536 | GK21924-PA | 1..536 | 1..457 | 1893 | 68.7 | Plus |
Dwil\GK19819-PA | 326 | GK19819-PA | 1..326 | 120..443 | 837 | 46.8 | Plus |
Dwil\GK10139-PA | 552 | GK10139-PA | 56..323 | 169..424 | 205 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14370-PA | 537 | GE14370-PA | 1..274 | 1..274 | 1410 | 97.8 | Plus |
Dyak\GE14370-PA | 537 | GE14370-PA | 303..537 | 224..459 | 1173 | 89.8 | Plus |
Dyak\GE17896-PA | 407 | GE17896-PA | 75..407 | 113..443 | 868 | 44.9 | Plus |
Dyak\GE15443-PA | 455 | GE15443-PA | 64..331 | 169..424 | 209 | 25.3 | Plus |
Translation from 78 to 1457
> RE02778.hyp MIAVLLDIFWIPIGGFLSFLIFISAINKSIGVRKAYVNLLLRIFEYGRVS IETASKENQHIQNPKTDDKQGVQLVDDADSKEGTNGATLITRDAVLLPQP QEPAPEKPVSSTKDEINFDFEKCLDYVKSGVEAIIEDDVTSRFEAEELKS WNMLTRTNRHYEFISWKITSIWVFGFFIRYVILMPLRVLVCFVGVLFAVL SSSIVACLPFRFVRLSLASLSFKITFRLISSSMSSFIKFHNKQYKPTVSG FCVANHTSPLDVAILSTDCTYSLIGQRHGGFLGVLQRALARASPHIWFER GEAKDRHLVAERLKQHVSDPNNPPILIFPEGTCINNTSVMQFKKGSFEVG GVIYPVAIKYDPRFGDAFWNSAKYSMMQYLYMMMTSWAIVCDVWYLPPMY RQEGESAIDFANRVKSVIAKQGGLIDLVWDGQLKRMKPKKEWREIQQVEF ANRLKSDST*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3209-PC | 459 | CG3209-PC | 1..459 | 1..459 | 2393 | 100 | Plus |
CG3209-PB | 458 | CG3209-PB | 1..458 | 1..459 | 2133 | 89.3 | Plus |
CG3209-PD | 537 | CG3209-PD | 1..274 | 1..274 | 1398 | 99.6 | Plus |
CG3209-PD | 537 | CG3209-PD | 305..537 | 226..459 | 1134 | 90.6 | Plus |
CG3209-PE | 380 | CG3209-PE | 1..195 | 1..195 | 1004 | 99.5 | Plus |
CG3209-PE | 380 | CG3209-PE | 195..380 | 274..459 | 998 | 100 | Plus |
CG15450-PA | 407 | CG15450-PA | 75..407 | 113..443 | 848 | 45.8 | Plus |